Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48491 * 109.46983 * 269.99776 * 3 2 1 5 5 H 1.48499 * 109.46991 * 29.99885 * 3 2 1 6 6 H 1.48507 * 109.46804 * 149.99838 * 3 2 1 7 7 C 1.37876 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00216 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00378 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47279 * 59.99206 * 9 7 2 11 11 N 1.46494 * 109.47412 * 179.97438 * 9 7 2 12 12 C 1.34783 * 120.00200 * 204.99832 * 11 9 7 13 13 O 1.21515 * 119.99664 * 359.97438 * 12 11 9 14 14 C 1.48154 * 120.00136 * 180.02562 * 12 11 9 15 15 C 1.39942 * 120.89495 * 0.02562 * 14 12 11 16 16 C 1.38055 * 119.14046 * 180.02562 * 15 14 12 17 17 N 1.31835 * 120.98176 * 0.02562 * 16 15 14 18 18 C 1.32244 * 121.97090 * 359.97438 * 17 16 15 19 19 N 1.39837 * 119.62171 * 180.02562 * 18 17 16 20 20 C 1.35842 * 126.10631 * 359.72060 * 19 18 17 21 21 C 1.35276 * 107.61366 * 179.89357 * 20 19 18 22 22 C 1.39957 * 107.96950 * 0.36485 * 21 20 19 23 23 N 1.30815 * 108.36810 * 359.77407 * 22 21 20 24 24 C 1.38913 * 120.74922 * 0.02562 * 18 17 16 25 25 C 1.52998 * 109.46720 * 299.99655 * 9 7 2 26 26 F 1.39898 * 109.47276 * 299.99405 * 25 9 7 27 27 F 1.39902 * 109.47443 * 59.99884 * 25 9 7 28 28 F 1.39903 * 109.47302 * 179.97438 * 25 9 7 29 29 H 0.96997 * 120.00371 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00519 * 24.99660 * 11 9 7 31 31 H 1.08005 * 120.43086 * 0.29297 * 15 14 12 32 32 H 1.08004 * 119.50841 * 179.97438 * 16 15 14 33 33 H 1.08002 * 126.18772 * 0.02562 * 20 19 18 34 34 H 1.08003 * 126.01296 * 180.14156 * 21 20 19 35 35 H 1.08000 * 125.81502 * 179.77107 * 22 21 20 36 36 H 1.08004 * 120.52475 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8123 -0.4927 13 8 0.7172 -4.9704 -0.9370 14 6 2.7997 -5.9385 -0.4922 15 6 4.0935 -5.7777 0.0163 16 6 4.9612 -6.8513 -0.0016 17 7 4.5875 -8.0178 -0.4892 18 6 3.3755 -8.2158 -0.9799 19 7 3.0311 -9.4737 -1.4843 20 6 3.8389 -10.5647 -1.5346 21 6 3.1293 -11.5744 -2.0884 22 6 1.8530 -11.0881 -2.3943 23 7 1.7931 -9.8321 -2.0335 24 6 2.4408 -7.1884 -0.9999 25 6 0.3712 -2.5800 1.2495 26 9 1.1751 -2.5057 2.3920 27 9 -0.5380 -1.5166 1.2491 28 9 -0.3287 -3.7913 1.2493 29 1 -0.4850 0.8400 0.0004 30 1 3.0970 -3.4865 0.3555 31 1 4.4078 -4.8271 0.4214 32 1 5.9612 -6.7337 0.3889 33 1 4.8619 -10.6169 -1.1921 34 1 3.4860 -12.5781 -2.2668 35 1 1.0539 -11.6535 -2.8504 36 1 1.4521 -7.3540 -1.4019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417583089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = -39.935654 kcal Electronic energy + Delta-G solvation = -29061.984320 eV Core-core repulsion = 24327.535969 eV Total energy + Delta-G solvation = -4734.448352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.44131 -46.09750 -45.69942 -41.74423 -40.39052 -38.76076 -34.91889 -33.94939 -32.89344 -32.50212 -30.60158 -29.59665 -28.57124 -25.02233 -24.60762 -24.10879 -22.28308 -21.32735 -20.93061 -20.06820 -18.87724 -17.51476 -17.04368 -16.93894 -16.72343 -16.36882 -15.90366 -15.74592 -15.34365 -15.25996 -14.94232 -14.50878 -14.35421 -14.05948 -13.75361 -13.53271 -13.23299 -13.01928 -12.99270 -12.61352 -12.49001 -12.40339 -12.24210 -12.03103 -11.89478 -11.28333 -11.03545 -10.95791 -10.92144 -10.66716 -10.51946 -10.20870 -10.02947 -9.79048 -9.54783 -9.41139 -8.82316 -8.50362 -8.46625 -6.32568 -4.57833 0.36040 0.69539 1.81396 1.89638 2.55037 3.06640 3.13344 3.19178 3.22026 3.38924 3.76402 4.06621 4.13292 4.29036 4.45298 4.56762 4.69621 4.76814 4.84479 4.85899 4.96580 5.23564 5.40082 5.50674 5.60141 5.68837 5.74358 5.76502 5.89245 6.09725 6.14644 6.30006 6.77591 6.84410 6.93976 7.14432 7.32822 7.52971 7.63218 8.06235 8.36936 8.59370 9.10434 10.59072 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.002846 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.175864 B = 9836.914076 C =10379.768431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.245 3.755 10 H 0.089 0.911 11 N -0.699 5.699 12 C 0.546 3.454 13 O -0.516 6.516 14 C -0.051 4.051 15 C -0.154 4.154 16 C 0.130 3.870 17 N -0.498 5.498 18 C 0.362 3.638 19 N -0.325 5.325 20 C 0.078 3.922 21 C -0.268 4.268 22 C 0.061 3.939 23 N -0.278 5.278 24 C -0.108 4.108 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.135 7.135 28 F -0.217 7.217 29 H 0.270 0.730 30 H 0.400 0.600 31 H 0.151 0.849 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.156 0.844 35 H 0.193 0.807 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.828 -15.326 -1.095 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.592 4.592 8 H 0.097 0.903 9 C 0.139 3.861 10 H 0.106 0.894 11 N -0.349 5.349 12 C 0.330 3.670 13 O -0.392 6.392 14 C -0.063 4.063 15 C -0.175 4.175 16 C -0.027 4.027 17 N -0.212 5.212 18 C 0.135 3.865 19 N -0.103 5.103 20 C -0.063 4.063 21 C -0.296 4.296 22 C -0.127 4.127 23 N -0.097 5.097 24 C -0.131 4.131 25 C 0.361 3.639 26 F -0.190 7.190 27 F -0.116 7.116 28 F -0.199 7.199 29 H 0.080 0.920 30 H 0.235 0.765 31 H 0.168 0.832 32 H 0.191 0.809 33 H 0.199 0.801 34 H 0.173 0.827 35 H 0.210 0.790 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.670 -14.844 -1.297 17.239 hybrid contribution 0.647 0.743 0.479 1.095 sum 9.317 -14.101 -0.818 16.921 Atomic orbital electron populations 1.70389 1.05901 1.27586 1.43176 1.25085 0.95175 1.00199 0.93904 0.86183 0.79578 0.81496 0.78434 1.20127 1.20724 1.19450 1.20845 0.93807 0.87913 1.56638 0.90299 1.19824 0.88649 0.85518 0.92061 0.89384 1.45989 1.17436 1.10197 1.61237 1.18077 0.86890 0.82652 0.79336 1.90813 1.20222 1.82653 1.45472 1.20483 0.94492 0.94353 0.96939 1.22455 0.93350 1.01529 1.00199 1.22455 0.99888 0.85862 0.94516 1.66688 1.15893 1.26424 1.12151 1.17510 0.90302 0.83207 0.95511 1.45785 1.10405 1.07186 1.46888 1.22911 0.98199 0.85979 0.99228 1.21658 0.95069 1.01185 1.11712 1.24193 0.98248 0.91941 0.98363 1.77595 0.99302 1.15698 1.17087 1.21716 1.01533 0.90552 0.99290 1.23101 0.80916 0.72904 0.87016 1.92992 1.74397 1.96181 1.55451 1.93414 1.68301 1.53702 1.96177 1.93079 1.81463 1.48412 1.96964 0.91950 0.76512 0.83159 0.80873 0.80051 0.82655 0.78990 0.82091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.37 9.50 55.43 0.53 -21.85 16 2 C 0.07 1.65 5.20 -17.82 -0.09 1.56 16 3 Si 0.92 19.43 29.54 -169.99 -5.02 14.41 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.56 -13.56 8.46 -34.44 -0.29 -13.85 16 8 H 0.08 1.79 7.74 -52.48 -0.41 1.38 16 9 C 0.24 5.85 2.21 -69.09 -0.15 5.70 16 10 H 0.09 2.36 7.58 -51.93 -0.39 1.97 16 11 N -0.70 -13.56 4.94 -55.79 -0.28 -13.83 16 12 C 0.55 10.59 7.33 -12.19 -0.09 10.51 16 13 O -0.52 -11.96 15.01 5.35 0.08 -11.88 16 14 C -0.05 -0.79 5.91 -104.68 -0.62 -1.40 16 15 C -0.15 -1.77 9.61 -39.01 -0.37 -2.14 16 16 C 0.13 1.31 11.17 -17.62 -0.20 1.12 16 17 N -0.50 -6.13 9.83 -12.34 -0.12 -6.25 16 18 C 0.36 5.14 7.55 -154.41 -1.17 3.98 16 19 N -0.32 -4.42 3.81 -12.12 -0.05 -4.47 16 20 C 0.08 0.83 11.10 -16.83 -0.19 0.64 16 21 C -0.27 -2.39 10.80 -39.99 -0.43 -2.82 16 22 C 0.06 0.62 12.02 -17.34 -0.21 0.41 16 23 N -0.28 -3.86 11.83 30.64 0.36 -3.50 16 24 C -0.11 -1.69 9.27 -38.82 -0.36 -2.05 16 25 C 0.42 10.42 2.81 37.16 0.10 10.52 16 26 F -0.21 -4.97 16.94 2.25 0.04 -4.93 16 27 F -0.13 -3.65 12.91 2.25 0.03 -3.63 16 28 F -0.22 -5.44 15.68 2.25 0.04 -5.41 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.40 6.40 6.68 -40.82 -0.27 6.13 16 31 H 0.15 1.36 6.53 -52.48 -0.34 1.01 16 32 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.18 1.49 8.05 -52.49 -0.42 1.06 16 34 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.16 2.76 7.37 -52.48 -0.39 2.37 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -31.94 331.17 -6.09 -38.03 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.63 Total: 6.15 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: -4.06 Total: 12.16 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.45 Total: -49.90 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 9 Polarization: -14.07 SS G_CDS: 0.10 Total: -13.96 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.94 -6.09 -38.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417583089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.906 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds