Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48491 * 109.46983 * 269.99776 * 3 2 1 5 5 H 1.48499 * 109.46991 * 29.99885 * 3 2 1 6 6 H 1.48507 * 109.46804 * 149.99838 * 3 2 1 7 7 C 1.37876 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00216 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00378 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47279 * 59.99206 * 9 7 2 11 11 N 1.46494 * 109.47412 * 179.97438 * 9 7 2 12 12 C 1.34783 * 120.00200 * 204.99832 * 11 9 7 13 13 O 1.21515 * 119.99664 * 359.97438 * 12 11 9 14 14 C 1.48154 * 120.00136 * 180.02562 * 12 11 9 15 15 C 1.39942 * 120.89495 * 0.02562 * 14 12 11 16 16 C 1.38055 * 119.14046 * 180.02562 * 15 14 12 17 17 N 1.31835 * 120.98176 * 0.02562 * 16 15 14 18 18 C 1.32244 * 121.97090 * 359.97438 * 17 16 15 19 19 N 1.39837 * 119.62171 * 180.02562 * 18 17 16 20 20 C 1.35842 * 126.10631 * 359.72060 * 19 18 17 21 21 C 1.35276 * 107.61366 * 179.89357 * 20 19 18 22 22 C 1.39957 * 107.96950 * 0.36485 * 21 20 19 23 23 N 1.30815 * 108.36810 * 359.77407 * 22 21 20 24 24 C 1.38913 * 120.74922 * 0.02562 * 18 17 16 25 25 C 1.52998 * 109.46720 * 299.99655 * 9 7 2 26 26 F 1.39898 * 109.47276 * 299.99405 * 25 9 7 27 27 F 1.39902 * 109.47443 * 59.99884 * 25 9 7 28 28 F 1.39903 * 109.47302 * 179.97438 * 25 9 7 29 29 H 0.96997 * 120.00371 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00519 * 24.99660 * 11 9 7 31 31 H 1.08005 * 120.43086 * 0.29297 * 15 14 12 32 32 H 1.08004 * 119.50841 * 179.97438 * 16 15 14 33 33 H 1.08002 * 126.18772 * 0.02562 * 20 19 18 34 34 H 1.08003 * 126.01296 * 180.14156 * 21 20 19 35 35 H 1.08000 * 125.81502 * 179.77107 * 22 21 20 36 36 H 1.08004 * 120.52475 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8123 -0.4927 13 8 0.7172 -4.9704 -0.9370 14 6 2.7997 -5.9385 -0.4922 15 6 4.0935 -5.7777 0.0163 16 6 4.9612 -6.8513 -0.0016 17 7 4.5875 -8.0178 -0.4892 18 6 3.3755 -8.2158 -0.9799 19 7 3.0311 -9.4737 -1.4843 20 6 3.8389 -10.5647 -1.5346 21 6 3.1293 -11.5744 -2.0884 22 6 1.8530 -11.0881 -2.3943 23 7 1.7931 -9.8321 -2.0335 24 6 2.4408 -7.1884 -0.9999 25 6 0.3712 -2.5800 1.2495 26 9 1.1751 -2.5057 2.3920 27 9 -0.5380 -1.5166 1.2491 28 9 -0.3287 -3.7913 1.2493 29 1 -0.4850 0.8400 0.0004 30 1 3.0970 -3.4865 0.3555 31 1 4.4078 -4.8271 0.4214 32 1 5.9612 -6.7337 0.3889 33 1 4.8619 -10.6169 -1.1921 34 1 3.4860 -12.5781 -2.2668 35 1 1.0539 -11.6535 -2.8504 36 1 1.4521 -7.3540 -1.4019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417583089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -60.522121 kcal Electronic energy + Delta-G solvation = -29062.877017 eV Core-core repulsion = 24327.535969 eV Total energy + Delta-G solvation = -4735.341048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.46883 -48.10659 -47.77133 -42.62314 -41.51589 -40.16912 -36.69003 -35.05536 -34.39653 -33.77213 -31.50097 -30.60482 -30.20287 -26.69776 -26.09189 -25.10053 -23.65579 -22.71878 -21.80109 -21.46714 -20.11552 -19.05619 -18.93004 -18.70764 -18.35307 -17.91982 -17.15104 -16.80521 -16.68544 -16.65171 -16.31731 -15.88447 -15.57580 -15.13974 -15.03916 -14.98770 -14.64992 -14.55351 -14.51475 -14.38935 -14.32564 -14.08580 -13.94433 -13.70010 -13.21927 -13.10770 -12.81903 -12.62275 -12.24228 -11.84974 -11.63816 -11.59870 -11.50626 -11.15811 -10.87418 -10.70747 -10.26467 -10.22912 -9.37624 -8.23494 -6.55332 -0.66026 -0.35179 0.95919 1.03774 1.47632 1.48664 1.60131 1.70939 1.82909 1.89635 2.36523 2.46071 2.66699 2.92207 3.16792 3.32273 3.42019 3.71573 3.74564 3.80901 3.83960 4.02754 4.06403 4.12980 4.41617 4.55447 4.64417 4.72109 4.82813 4.90105 5.03249 5.19503 5.28024 5.48065 5.57585 5.61129 5.99670 6.29518 6.46423 6.52120 6.73455 7.04304 7.19188 8.69419 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.002846 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.175864 B = 9836.914076 C =10379.768431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.561 4.561 8 H 0.100 0.900 9 C 0.251 3.749 10 H 0.049 0.951 11 N -0.688 5.688 12 C 0.545 3.455 13 O -0.565 6.565 14 C -0.067 4.067 15 C -0.141 4.141 16 C 0.149 3.851 17 N -0.493 5.493 18 C 0.356 3.644 19 N -0.344 5.344 20 C 0.066 3.934 21 C -0.257 4.257 22 C 0.065 3.935 23 N -0.335 5.335 24 C -0.132 4.132 25 C 0.413 3.587 26 F -0.200 7.200 27 F -0.149 7.149 28 F -0.221 7.221 29 H 0.269 0.731 30 H 0.418 0.582 31 H 0.181 0.819 32 H 0.228 0.772 33 H 0.204 0.796 34 H 0.192 0.808 35 H 0.225 0.775 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.641 -16.232 -0.484 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.598 4.598 8 H 0.118 0.882 9 C 0.144 3.856 10 H 0.067 0.933 11 N -0.340 5.340 12 C 0.332 3.668 13 O -0.444 6.444 14 C -0.078 4.078 15 C -0.162 4.162 16 C -0.009 4.009 17 N -0.207 5.207 18 C 0.130 3.870 19 N -0.123 5.123 20 C -0.074 4.074 21 C -0.284 4.284 22 C -0.123 4.123 23 N -0.154 5.154 24 C -0.155 4.155 25 C 0.357 3.643 26 F -0.182 7.182 27 F -0.130 7.130 28 F -0.203 7.203 29 H 0.079 0.921 30 H 0.257 0.743 31 H 0.198 0.802 32 H 0.244 0.756 33 H 0.221 0.779 34 H 0.209 0.791 35 H 0.241 0.759 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.526 -15.797 -0.684 20.172 hybrid contribution -0.521 0.875 0.277 1.055 sum 12.005 -14.922 -0.407 19.156 Atomic orbital electron populations 1.70529 1.07637 1.28294 1.44461 1.26030 0.95872 1.03834 0.93359 0.85130 0.78659 0.76859 0.78537 1.19675 1.21266 1.17709 1.21237 0.94802 0.87849 1.55899 0.88225 1.19422 0.88887 0.87249 0.89999 0.93301 1.45751 1.17542 1.09284 1.61402 1.18693 0.86987 0.83297 0.77837 1.90780 1.22692 1.83485 1.47453 1.20125 0.95468 0.92600 0.99609 1.22789 0.91344 1.03402 0.98667 1.23365 1.01286 0.84250 0.91977 1.66889 1.14539 1.27383 1.11935 1.17571 0.90496 0.83357 0.95566 1.45910 1.10911 1.07605 1.47879 1.23482 0.99078 0.85460 0.99342 1.22123 0.94055 1.02266 1.09975 1.24900 0.99690 0.91010 0.96740 1.77584 1.00612 1.17888 1.19294 1.21493 1.01092 0.91751 1.01189 1.23306 0.80907 0.72369 0.87755 1.92992 1.74020 1.96128 1.55029 1.93386 1.68921 1.54421 1.96302 1.93070 1.81660 1.48588 1.97024 0.92111 0.74327 0.80210 0.75607 0.77896 0.79107 0.75878 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.77 9.50 21.45 0.20 -47.56 16 2 C 0.01 0.73 5.20 84.65 0.44 1.17 16 3 Si 0.98 39.08 29.54 68.60 2.03 41.11 16 4 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.29 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.56 -27.13 8.46 25.60 0.22 -26.91 16 8 H 0.10 4.29 7.74 -2.91 -0.02 4.27 16 9 C 0.25 12.29 2.21 44.24 0.10 12.39 16 10 H 0.05 2.78 7.58 -2.39 -0.02 2.77 16 11 N -0.69 -26.78 4.94 -448.70 -2.22 -28.99 16 12 C 0.55 21.90 7.33 86.88 0.64 22.54 16 13 O -0.57 -28.08 15.01 -3.76 -0.06 -28.13 16 14 C -0.07 -2.07 5.91 -19.90 -0.12 -2.18 16 15 C -0.14 -2.85 9.61 22.64 0.22 -2.63 16 16 C 0.15 2.40 11.17 84.65 0.95 3.35 16 17 N -0.49 -10.94 9.83 -192.94 -1.90 -12.83 16 18 C 0.36 10.09 7.55 132.77 1.00 11.09 16 19 N -0.34 -9.36 3.81 -192.26 -0.73 -10.09 16 20 C 0.07 1.29 11.10 83.39 0.93 2.21 16 21 C -0.26 -3.98 10.80 22.00 0.24 -3.74 16 22 C 0.06 1.24 12.02 85.26 1.02 2.27 16 23 N -0.34 -9.57 11.83 -56.98 -0.67 -10.25 16 24 C -0.13 -4.34 9.27 22.76 0.21 -4.12 16 25 C 0.41 21.13 2.81 71.98 0.20 21.33 16 26 F -0.20 -9.49 16.94 44.97 0.76 -8.73 16 27 F -0.15 -8.34 12.91 44.97 0.58 -7.76 16 28 F -0.22 -11.52 15.68 44.97 0.70 -10.81 16 29 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.42 12.67 6.68 -92.71 -0.62 12.05 16 31 H 0.18 2.48 6.53 -2.91 -0.02 2.46 16 32 H 0.23 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.20 2.79 8.05 -2.91 -0.02 2.77 16 34 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.22 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.13 5.01 7.37 -2.91 -0.02 4.99 16 Total: -1.00 -74.27 331.17 5.30 -68.98 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.56 Total: 18.32 kcal Atomic # 6 Polarization: 30.71 SS G_CDS: 6.04 Total: 36.75 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -5.32 Total: -109.73 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.06 Total: -28.13 kcal Atomic # 9 Polarization: -29.35 SS G_CDS: 2.05 Total: -27.30 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -74.27 5.30 -68.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417583089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.456 kcal (2) G-P(sol) polarization free energy of solvation -74.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds