Wall clock time and date at job start Sat Apr 11 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00500 * 2 1 4 4 H 1.48499 * 109.47174 * 240.00074 * 3 2 1 5 5 H 1.48505 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47327 * 119.99535 * 3 2 1 7 7 C 1.37881 * 119.99525 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00037 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00111 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46886 * 60.00223 * 9 7 2 11 11 N 1.46504 * 109.46909 * 180.02562 * 9 7 2 12 12 C 1.34776 * 119.99539 * 204.99980 * 11 9 7 13 13 O 1.21577 * 120.00536 * 0.02562 * 12 11 9 14 14 C 1.47681 * 119.99652 * 180.02562 * 12 11 9 15 15 C 1.39704 * 120.07816 * 180.02562 * 14 12 11 16 16 C 1.37732 * 119.91331 * 180.30120 * 15 14 12 17 17 C 1.39020 * 120.08360 * 359.46316 * 16 15 14 18 18 N 1.39930 * 119.91964 * 180.23997 * 17 16 15 19 19 C 1.36358 * 127.11356 * 179.97438 * 18 17 16 20 20 N 1.30504 * 107.19250 * 179.86993 * 19 18 17 21 21 N 1.28534 * 109.91909 * 0.40496 * 20 19 18 22 22 C 1.30500 * 109.92340 * 359.74203 * 21 20 19 23 23 C 1.39029 * 120.16245 * 0.50833 * 17 16 15 24 24 C 1.37739 * 120.07622 * 359.77624 * 23 17 16 25 25 C 1.52997 * 109.47237 * 299.99979 * 9 7 2 26 26 F 1.39899 * 109.47035 * 299.99866 * 25 9 7 27 27 F 1.39900 * 109.46912 * 60.00282 * 25 9 7 28 28 F 1.39905 * 109.46954 * 179.97438 * 25 9 7 29 29 H 0.97000 * 119.99297 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00174 * 25.00226 * 11 9 7 31 31 H 1.08002 * 120.03945 * 0.02562 * 15 14 12 32 32 H 1.08004 * 119.95415 * 179.69652 * 16 15 14 33 33 H 1.07995 * 126.40417 * 359.97438 * 19 18 17 34 34 H 1.07998 * 126.40673 * 179.97438 * 22 21 20 35 35 H 1.07999 * 119.96209 * 179.74636 * 23 17 16 36 36 H 1.08000 * 120.03726 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8897 11 7 2.2029 -3.6127 0.0018 12 6 1.8370 -4.8125 -0.4913 13 8 0.7172 -4.9706 -0.9375 14 6 2.7964 -5.9352 -0.4895 15 6 2.4192 -7.1795 -1.0007 16 6 3.3147 -8.2259 -0.9917 17 6 4.5961 -8.0421 -0.4851 18 7 5.5048 -9.1062 -0.4822 19 6 6.7894 -9.0901 -0.0251 20 7 7.2784 -10.2864 -0.2062 21 7 6.3937 -11.0433 -0.7508 22 6 5.2908 -10.3722 -0.9414 23 6 4.9754 -6.8051 0.0239 24 6 4.0833 -5.7557 0.0235 25 6 0.3708 -2.5799 1.2494 26 9 1.1747 -2.5056 2.3920 27 9 -0.5383 -1.5165 1.2488 28 9 -0.3292 -3.7913 1.2491 29 1 -0.4849 0.8401 -0.0004 30 1 3.0964 -3.4866 0.3574 31 1 1.4251 -7.3218 -1.3982 32 1 3.0221 -9.1894 -1.3822 33 1 7.3051 -8.2457 0.4077 34 1 4.3791 -10.7489 -1.3810 35 1 5.9704 -6.6671 0.4204 36 1 4.3784 -4.7952 0.4194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001419856596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:35 Heat of formation + Delta-G solvation = -53.983279 kcal Electronic energy + Delta-G solvation = -28891.529888 eV Core-core repulsion = 24156.472385 eV Total energy + Delta-G solvation = -4735.057502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.46860 -46.12640 -45.72669 -43.59896 -40.22347 -38.54411 -35.21061 -34.90766 -32.82921 -31.84337 -30.80180 -30.52604 -28.34173 -25.08304 -24.65258 -24.01746 -22.70749 -21.66396 -21.32024 -20.18269 -19.19119 -18.24791 -17.02664 -16.87474 -16.73649 -16.54132 -16.13018 -16.07695 -15.60715 -15.20044 -14.93080 -14.62797 -14.41960 -14.25013 -13.93638 -13.56761 -13.28876 -13.05528 -12.99028 -12.60282 -12.51571 -12.39283 -12.11176 -11.93613 -11.89865 -11.54809 -11.51187 -11.27823 -10.96929 -10.92488 -10.87815 -10.52540 -9.88425 -9.81973 -9.61060 -9.54089 -8.93265 -8.83562 -8.45730 -6.34913 -4.60308 0.12444 0.87026 1.58522 1.94215 2.47958 2.85552 3.12121 3.17352 3.18815 3.49067 3.70276 3.96549 4.08682 4.10847 4.19330 4.36512 4.43523 4.59394 4.78255 4.81771 4.82138 4.91843 5.13532 5.25543 5.46395 5.58432 5.66834 5.74065 5.76705 5.88330 6.00515 6.08558 6.17990 6.57331 6.76717 6.93438 7.30937 7.50726 8.06678 8.25204 8.35025 8.60217 9.08121 10.56580 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.002670 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.840743 B =10482.556069 C =11164.425369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.245 3.755 10 H 0.088 0.912 11 N -0.703 5.703 12 C 0.545 3.455 13 O -0.526 6.526 14 C -0.118 4.118 15 C -0.035 4.035 16 C -0.134 4.134 17 C 0.140 3.860 18 N -0.428 5.428 19 C 0.161 3.839 20 N -0.293 5.293 21 N -0.293 5.293 22 C 0.161 3.839 23 C -0.133 4.133 24 C -0.059 4.059 25 C 0.417 3.583 26 F -0.209 7.209 27 F -0.135 7.135 28 F -0.218 7.218 29 H 0.270 0.730 30 H 0.398 0.602 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.224 0.776 34 H 0.223 0.777 35 H 0.139 0.861 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.019 -11.198 -0.476 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.593 4.593 8 H 0.096 0.904 9 C 0.140 3.860 10 H 0.106 0.894 11 N -0.352 5.352 12 C 0.331 3.669 13 O -0.403 6.403 14 C -0.122 4.122 15 C -0.054 4.054 16 C -0.154 4.154 17 C 0.046 3.954 18 N -0.115 5.115 19 C -0.125 4.125 20 N -0.130 5.130 21 N -0.130 5.130 22 C -0.125 4.125 23 C -0.152 4.152 24 C -0.078 4.078 25 C 0.361 3.639 26 F -0.191 7.191 27 F -0.116 7.116 28 F -0.200 7.200 29 H 0.081 0.919 30 H 0.233 0.767 31 H 0.169 0.831 32 H 0.156 0.844 33 H 0.240 0.760 34 H 0.240 0.760 35 H 0.156 0.844 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.032 -12.379 -0.763 14.776 hybrid contribution -0.273 2.030 0.545 2.120 sum 7.759 -10.348 -0.218 12.936 Atomic orbital electron populations 1.70381 1.05891 1.27686 1.43113 1.25081 0.95175 1.00182 0.93895 0.86253 0.79360 0.81196 0.78963 1.19723 1.20795 1.19756 1.20814 0.93746 0.88014 1.56732 0.90424 1.19789 0.88652 0.85598 0.91962 0.89446 1.46028 1.17334 1.10435 1.61429 1.18151 0.87073 0.82755 0.78931 1.90804 1.20567 1.82895 1.46084 1.20353 0.94692 0.95373 1.01733 1.21208 0.99933 0.90201 0.94060 1.20802 0.91299 1.00675 1.02656 1.17894 0.89463 0.86645 1.01349 1.44302 1.11865 1.10324 1.45007 1.26831 0.82778 1.00487 1.02403 1.74248 1.23700 0.99876 1.15149 1.74245 0.98133 1.25561 1.15038 1.26824 1.02109 0.81226 1.02365 1.20754 1.01162 0.90875 1.02455 1.21310 0.91855 0.98982 0.95670 1.23119 0.80914 0.72870 0.87044 1.92992 1.74411 1.96181 1.55481 1.93413 1.68331 1.53718 1.96179 1.93074 1.81471 1.48442 1.96969 0.91904 0.76678 0.83134 0.84391 0.76016 0.76043 0.84372 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.98 9.50 55.43 0.53 -21.45 16 2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 3 Si 0.92 19.10 29.54 -169.99 -5.02 14.08 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.56 -13.28 8.46 -34.44 -0.29 -13.57 16 8 H 0.08 1.72 7.74 -52.49 -0.41 1.31 16 9 C 0.25 5.67 2.21 -69.08 -0.15 5.52 16 10 H 0.09 2.27 7.58 -51.93 -0.39 1.88 16 11 N -0.70 -12.89 4.93 -55.93 -0.28 -13.17 16 12 C 0.55 9.61 7.30 -12.40 -0.09 9.52 16 13 O -0.53 -11.18 14.91 5.30 0.08 -11.10 16 14 C -0.12 -1.50 5.88 -104.95 -0.62 -2.11 16 15 C -0.03 -0.37 9.58 -39.22 -0.38 -0.75 16 16 C -0.13 -1.12 9.46 -39.48 -0.37 -1.49 16 17 C 0.14 1.18 6.65 -83.58 -0.56 0.63 16 18 N -0.43 -3.70 2.99 -63.17 -0.19 -3.89 16 19 C 0.16 1.41 12.06 -89.16 -1.08 0.34 16 20 N -0.29 -3.54 12.19 29.85 0.36 -3.18 16 21 N -0.29 -3.54 12.19 29.85 0.36 -3.18 16 22 C 0.16 1.41 12.06 -89.17 -1.08 0.34 16 23 C -0.13 -1.05 9.47 -39.47 -0.37 -1.42 16 24 C -0.06 -0.57 9.53 -39.22 -0.37 -0.95 16 25 C 0.42 10.11 2.81 37.16 0.10 10.21 16 26 F -0.21 -4.86 16.94 2.25 0.04 -4.82 16 27 F -0.14 -3.59 12.91 2.25 0.03 -3.56 16 28 F -0.22 -5.24 15.68 2.25 0.04 -5.20 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.40 6.04 6.56 -40.82 -0.27 5.77 16 31 H 0.15 1.63 7.64 -52.49 -0.40 1.23 16 32 H 0.14 0.75 6.84 -52.48 -0.36 0.39 16 33 H 0.22 1.02 7.17 -52.49 -0.38 0.65 16 34 H 0.22 1.03 7.17 -52.49 -0.38 0.66 16 35 H 0.14 0.70 6.84 -52.49 -0.36 0.34 16 36 H 0.14 1.18 6.39 -52.49 -0.34 0.84 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -32.28 326.04 -6.89 -39.17 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -2.41 Total: 3.60 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -5.34 Total: 7.79 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.79 Total: -44.86 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 9 Polarization: -13.68 SS G_CDS: 0.10 Total: -13.58 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.28 -6.89 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419856596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.817 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds