Wall clock time and date at job start Sat Apr 11 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00500 * 2 1 4 4 H 1.48499 * 109.47174 * 240.00074 * 3 2 1 5 5 H 1.48505 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47327 * 119.99535 * 3 2 1 7 7 C 1.37881 * 119.99525 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00037 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00111 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46886 * 60.00223 * 9 7 2 11 11 N 1.46504 * 109.46909 * 180.02562 * 9 7 2 12 12 C 1.34776 * 119.99539 * 204.99980 * 11 9 7 13 13 O 1.21577 * 120.00536 * 0.02562 * 12 11 9 14 14 C 1.47681 * 119.99652 * 180.02562 * 12 11 9 15 15 C 1.39704 * 120.07816 * 180.02562 * 14 12 11 16 16 C 1.37732 * 119.91331 * 180.30120 * 15 14 12 17 17 C 1.39020 * 120.08360 * 359.46316 * 16 15 14 18 18 N 1.39930 * 119.91964 * 180.23997 * 17 16 15 19 19 C 1.36358 * 127.11356 * 179.97438 * 18 17 16 20 20 N 1.30504 * 107.19250 * 179.86993 * 19 18 17 21 21 N 1.28534 * 109.91909 * 0.40496 * 20 19 18 22 22 C 1.30500 * 109.92340 * 359.74203 * 21 20 19 23 23 C 1.39029 * 120.16245 * 0.50833 * 17 16 15 24 24 C 1.37739 * 120.07622 * 359.77624 * 23 17 16 25 25 C 1.52997 * 109.47237 * 299.99979 * 9 7 2 26 26 F 1.39899 * 109.47035 * 299.99866 * 25 9 7 27 27 F 1.39900 * 109.46912 * 60.00282 * 25 9 7 28 28 F 1.39905 * 109.46954 * 179.97438 * 25 9 7 29 29 H 0.97000 * 119.99297 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00174 * 25.00226 * 11 9 7 31 31 H 1.08002 * 120.03945 * 0.02562 * 15 14 12 32 32 H 1.08004 * 119.95415 * 179.69652 * 16 15 14 33 33 H 1.07995 * 126.40417 * 359.97438 * 19 18 17 34 34 H 1.07998 * 126.40673 * 179.97438 * 22 21 20 35 35 H 1.07999 * 119.96209 * 179.74636 * 23 17 16 36 36 H 1.08000 * 120.03726 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8897 11 7 2.2029 -3.6127 0.0018 12 6 1.8370 -4.8125 -0.4913 13 8 0.7172 -4.9706 -0.9375 14 6 2.7964 -5.9352 -0.4895 15 6 2.4192 -7.1795 -1.0007 16 6 3.3147 -8.2259 -0.9917 17 6 4.5961 -8.0421 -0.4851 18 7 5.5048 -9.1062 -0.4822 19 6 6.7894 -9.0901 -0.0251 20 7 7.2784 -10.2864 -0.2062 21 7 6.3937 -11.0433 -0.7508 22 6 5.2908 -10.3722 -0.9414 23 6 4.9754 -6.8051 0.0239 24 6 4.0833 -5.7557 0.0235 25 6 0.3708 -2.5799 1.2494 26 9 1.1747 -2.5056 2.3920 27 9 -0.5383 -1.5165 1.2488 28 9 -0.3292 -3.7913 1.2491 29 1 -0.4849 0.8401 -0.0004 30 1 3.0964 -3.4866 0.3574 31 1 1.4251 -7.3218 -1.3982 32 1 3.0221 -9.1894 -1.3822 33 1 7.3051 -8.2457 0.4077 34 1 4.3791 -10.7489 -1.3810 35 1 5.9704 -6.6671 0.4204 36 1 4.3784 -4.7952 0.4194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001419856596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:34 Heat of formation + Delta-G solvation = -72.182908 kcal Electronic energy + Delta-G solvation = -28892.319083 eV Core-core repulsion = 24156.472385 eV Total energy + Delta-G solvation = -4735.846698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.42735 -48.06459 -47.73524 -44.29185 -41.27544 -39.66289 -36.59163 -35.98826 -34.53241 -32.59985 -31.66065 -31.43295 -29.84463 -26.63240 -25.89736 -24.76344 -23.85203 -22.90409 -22.14038 -21.54121 -19.96865 -19.57084 -18.88278 -18.71144 -18.54790 -17.60433 -17.24226 -16.97581 -16.80116 -16.51389 -16.05328 -15.79220 -15.42735 -15.21979 -15.00275 -14.97720 -14.64945 -14.49759 -14.46259 -14.28993 -14.15570 -14.04227 -13.98551 -13.84369 -13.06225 -12.79327 -12.65802 -12.61188 -12.27771 -12.25398 -12.22690 -11.61583 -11.57333 -11.05497 -10.68182 -10.60708 -10.22608 -10.16910 -9.65153 -8.21811 -6.53131 -0.66025 0.18335 0.85545 1.28607 1.48353 1.49962 1.58455 1.77116 1.81157 2.10390 2.38432 2.50732 2.73884 2.94436 3.33423 3.49305 3.60030 3.62698 3.77473 3.81407 3.86203 3.97436 4.10757 4.19307 4.20518 4.47897 4.53234 4.81079 4.86324 4.94811 5.01091 5.17997 5.27271 5.32417 5.45227 5.53355 5.63693 5.94088 6.51059 6.63932 7.14554 7.26690 7.55600 8.70577 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.002670 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.840743 B =10482.556069 C =11164.425369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.563 4.563 8 H 0.096 0.904 9 C 0.252 3.748 10 H 0.049 0.951 11 N -0.698 5.698 12 C 0.542 3.458 13 O -0.573 6.573 14 C -0.143 4.143 15 C -0.042 4.042 16 C -0.126 4.126 17 C 0.148 3.852 18 N -0.431 5.431 19 C 0.173 3.827 20 N -0.337 5.337 21 N -0.336 5.336 22 C 0.170 3.830 23 C -0.123 4.123 24 C -0.054 4.054 25 C 0.413 3.587 26 F -0.202 7.202 27 F -0.151 7.151 28 F -0.219 7.219 29 H 0.268 0.732 30 H 0.414 0.586 31 H 0.141 0.859 32 H 0.169 0.831 33 H 0.262 0.738 34 H 0.258 0.742 35 H 0.175 0.825 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 -11.589 -0.119 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.599 4.599 8 H 0.114 0.886 9 C 0.145 3.855 10 H 0.067 0.933 11 N -0.349 5.349 12 C 0.331 3.669 13 O -0.454 6.454 14 C -0.147 4.147 15 C -0.061 4.061 16 C -0.145 4.145 17 C 0.055 3.945 18 N -0.118 5.118 19 C -0.114 4.114 20 N -0.173 5.173 21 N -0.172 5.172 22 C -0.117 4.117 23 C -0.142 4.142 24 C -0.073 4.073 25 C 0.357 3.643 26 F -0.184 7.184 27 F -0.132 7.132 28 F -0.201 7.201 29 H 0.078 0.922 30 H 0.252 0.748 31 H 0.159 0.841 32 H 0.186 0.814 33 H 0.277 0.723 34 H 0.274 0.726 35 H 0.192 0.808 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.689 -12.812 -0.397 16.690 hybrid contribution -1.060 2.028 0.433 2.329 sum 9.629 -10.784 0.036 14.457 Atomic orbital electron populations 1.70523 1.07532 1.28259 1.44516 1.25991 0.95854 1.03704 0.93439 0.85230 0.78013 0.76783 0.79452 1.18618 1.21316 1.18889 1.21211 0.94679 0.88174 1.55880 0.88584 1.19344 0.88907 0.87372 0.89845 0.93280 1.45842 1.17289 1.09800 1.61988 1.18925 0.87368 0.83329 0.77262 1.90768 1.22938 1.83667 1.48004 1.20018 0.95127 0.94160 1.05403 1.21188 1.00250 0.90334 0.94358 1.21000 0.90722 1.01065 1.01727 1.18009 0.89308 0.86780 1.00401 1.44371 1.11929 1.10288 1.45217 1.27574 0.82618 1.00509 1.00730 1.74172 1.24827 1.01408 1.16861 1.74171 0.99415 1.26900 1.16705 1.27522 1.02340 0.80962 1.00866 1.21075 1.02207 0.89748 1.01178 1.21425 0.90653 1.00293 0.94930 1.23320 0.80889 0.72379 0.87750 1.92989 1.74101 1.96142 1.55162 1.93381 1.68982 1.54527 1.96307 1.93064 1.81609 1.48454 1.97018 0.92162 0.74773 0.84098 0.81388 0.72284 0.72627 0.80789 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.89 9.50 21.45 0.20 -46.69 16 2 C 0.02 0.77 5.20 84.66 0.44 1.21 16 3 Si 0.98 38.56 29.54 68.60 2.03 40.59 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.29 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.56 -26.73 8.46 25.60 0.22 -26.51 16 8 H 0.10 4.09 7.74 -2.91 -0.02 4.07 16 9 C 0.25 11.93 2.21 44.24 0.10 12.03 16 10 H 0.05 2.70 7.58 -2.39 -0.02 2.68 16 11 N -0.70 -25.64 4.93 -449.13 -2.22 -27.85 16 12 C 0.54 19.40 7.30 86.74 0.63 20.03 16 13 O -0.57 -25.47 14.91 -3.96 -0.06 -25.53 16 14 C -0.14 -3.49 5.88 -20.08 -0.12 -3.61 16 15 C -0.04 -0.85 9.58 22.50 0.22 -0.63 16 16 C -0.13 -1.69 9.46 22.34 0.21 -1.48 16 17 C 0.15 1.92 6.65 38.23 0.25 2.17 16 18 N -0.43 -5.81 2.99 -353.76 -1.06 -6.87 16 19 C 0.17 2.41 12.06 179.84 2.17 4.58 16 20 N -0.34 -7.51 12.19 -59.46 -0.73 -8.24 16 21 N -0.34 -7.56 12.19 -59.47 -0.73 -8.28 16 22 C 0.17 2.47 12.06 179.84 2.17 4.64 16 23 C -0.12 -1.41 9.47 22.34 0.21 -1.20 16 24 C -0.05 -0.89 9.53 22.50 0.21 -0.68 16 25 C 0.41 20.46 2.81 71.98 0.20 20.66 16 26 F -0.20 -9.38 16.94 44.97 0.76 -8.62 16 27 F -0.15 -8.24 12.91 44.97 0.58 -7.66 16 28 F -0.22 -10.87 15.68 44.97 0.70 -10.17 16 29 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.41 12.06 6.56 -92.71 -0.61 11.46 16 31 H 0.14 3.09 7.64 -2.91 -0.02 3.07 16 32 H 0.17 1.16 6.84 -2.91 -0.02 1.14 16 33 H 0.26 1.12 7.17 -2.91 -0.02 1.09 16 34 H 0.26 1.39 7.17 -2.91 -0.02 1.37 16 35 H 0.17 0.73 6.84 -2.91 -0.02 0.71 16 36 H 0.16 2.09 6.39 -2.91 -0.02 2.07 16 Total: -1.00 -73.49 326.04 6.99 -66.50 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.58 Total: 11.60 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 6.92 Total: 31.22 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -4.52 Total: -97.93 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.53 kcal Atomic # 9 Polarization: -28.49 SS G_CDS: 2.05 Total: -26.44 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -73.49 6.99 -66.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419856596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.682 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds