Wall clock time and date at job start Sat Apr 11 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99815 * 2 1 4 4 H 1.48504 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47242 * 300.00266 * 3 2 1 6 6 H 1.48497 * 109.47470 * 59.99952 * 3 2 1 7 7 C 1.37874 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00098 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46854 * 299.99842 * 9 7 2 11 11 N 1.46502 * 109.47103 * 180.02562 * 9 7 2 12 12 C 1.34773 * 119.99878 * 155.00036 * 11 9 7 13 13 O 1.21605 * 120.00360 * 359.97438 * 12 11 9 14 14 C 1.47416 * 119.99891 * 179.97438 * 12 11 9 15 15 C 1.41335 * 126.40773 * 0.02710 * 14 12 11 16 16 N 1.30479 * 108.06284 * 179.97438 * 15 14 12 17 17 N 1.39939 * 108.91617 * 359.97438 * 16 15 14 18 18 C 1.40177 * 125.76746 * 180.26013 * 17 16 15 19 19 C 1.39263 * 120.48636 * 359.69657 * 18 17 16 20 20 C 1.38506 * 118.36102 * 179.97438 * 19 18 17 21 21 C 1.38271 * 119.23079 * 0.02562 * 20 19 18 22 22 N 1.31855 * 120.91553 * 359.97438 * 21 20 19 23 23 C 1.31821 * 121.79057 * 359.73026 * 22 21 20 24 24 C 1.34535 * 108.45645 * 0.02562 * 17 16 15 25 25 C 1.52997 * 109.47143 * 60.00108 * 9 7 2 26 26 F 1.39901 * 109.47136 * 180.02562 * 25 9 7 27 27 F 1.39900 * 109.47059 * 299.99941 * 25 9 7 28 28 F 1.39895 * 109.47404 * 60.00001 * 25 9 7 29 29 H 0.96993 * 120.00397 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99987 * 334.99163 * 11 9 7 31 31 H 1.07993 * 125.96861 * 359.97438 * 15 14 12 32 32 H 1.07994 * 120.81528 * 359.95494 * 19 18 17 33 33 H 1.08003 * 120.38186 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.54338 * 179.97438 * 21 20 19 35 35 H 1.08009 * 119.66756 * 180.26964 * 23 22 21 36 36 H 1.08000 * 126.30755 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5571 0.8897 11 7 2.2032 -3.6126 -0.0005 12 6 1.8372 -4.8122 0.4927 13 8 0.7168 -4.9703 0.9382 14 6 2.7950 -5.9328 0.4922 15 6 4.1237 -5.9004 0.0115 16 7 4.6457 -7.0836 0.1850 17 7 3.6910 -7.9182 0.7769 18 6 3.8806 -9.2632 1.1232 19 6 5.1001 -9.8903 0.8799 20 6 5.2393 -11.2204 1.2402 21 6 4.1719 -11.8771 1.8243 22 7 3.0300 -11.2544 2.0412 23 6 2.8575 -9.9880 1.7188 24 6 2.5623 -7.2099 0.9621 25 6 0.3711 -2.5800 -1.2494 26 9 -0.3288 -3.7914 -1.2491 27 9 -0.5381 -1.5167 -1.2489 28 9 1.1749 -2.5056 -2.3920 29 1 -0.4850 0.8399 0.0004 30 1 3.0971 -3.4865 -0.3557 31 1 4.6202 -5.0457 -0.4235 32 1 5.9168 -9.3528 0.4213 33 1 6.1710 -11.7386 1.0669 34 1 4.2748 -12.9144 2.1069 35 1 1.9089 -9.5106 1.9160 36 1 1.6437 -7.5733 1.3986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001419863499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:42 Heat of formation + Delta-G solvation = -48.444568 kcal Electronic energy + Delta-G solvation = -28824.599589 eV Core-core repulsion = 24089.782263 eV Total energy + Delta-G solvation = -4734.817326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.34846 -46.00381 -45.61226 -41.93273 -40.29273 -38.59021 -34.68862 -34.41612 -32.75793 -32.55312 -30.57744 -29.94028 -28.21423 -24.79594 -24.46397 -24.31834 -22.66424 -21.36022 -20.95475 -19.76979 -18.82452 -17.56587 -17.10651 -16.85739 -16.64870 -16.57955 -16.21848 -15.78978 -15.44996 -15.25347 -14.89357 -14.37441 -14.35691 -14.17823 -13.63041 -13.56951 -13.14351 -13.01113 -12.89174 -12.58508 -12.48024 -12.39667 -12.28106 -11.98808 -11.82125 -11.35240 -11.18979 -11.06674 -10.88048 -10.79803 -10.41992 -10.18171 -10.07057 -9.66788 -9.38760 -9.37823 -8.74921 -8.55461 -8.24795 -6.25396 -4.49410 0.22367 0.70044 1.70538 1.90910 2.12366 3.17019 3.24558 3.27729 3.33432 3.71337 3.80565 3.94517 4.10191 4.20746 4.22150 4.46202 4.55162 4.57438 4.68353 4.91956 4.94933 4.98599 5.19568 5.21171 5.57504 5.60768 5.65225 5.85707 5.86874 5.96463 6.21141 6.22668 6.66815 6.92364 7.13441 7.24958 7.41615 7.45514 7.61391 8.29447 8.48302 8.84916 9.18632 10.66284 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.002605 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.915262 B =10744.225166 C =11268.815741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.246 3.754 10 H 0.087 0.913 11 N -0.704 5.704 12 C 0.583 3.417 13 O -0.539 6.539 14 C -0.260 4.260 15 C 0.097 3.903 16 N -0.295 5.295 17 N -0.317 5.317 18 C 0.112 3.888 19 C -0.075 4.075 20 C -0.147 4.147 21 C 0.085 3.915 22 N -0.456 5.456 23 C 0.087 3.913 24 C 0.120 3.880 25 C 0.417 3.583 26 F -0.217 7.217 27 F -0.137 7.137 28 F -0.209 7.209 29 H 0.268 0.732 30 H 0.398 0.602 31 H 0.200 0.800 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.075 -17.138 1.558 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.589 4.589 8 H 0.097 0.903 9 C 0.141 3.859 10 H 0.105 0.895 11 N -0.353 5.353 12 C 0.369 3.631 13 O -0.417 6.417 14 C -0.274 4.274 15 C -0.091 4.091 16 N -0.113 5.113 17 N -0.091 5.091 18 C 0.017 3.983 19 C -0.102 4.102 20 C -0.168 4.168 21 C -0.073 4.073 22 N -0.164 5.164 23 C -0.073 4.073 24 C -0.026 4.026 25 C 0.361 3.639 26 F -0.199 7.199 27 F -0.118 7.118 28 F -0.191 7.191 29 H 0.079 0.921 30 H 0.232 0.768 31 H 0.217 0.783 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.182 0.818 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 9.406 -18.340 2.106 20.718 hybrid contribution 0.665 1.942 -0.866 2.228 sum 10.071 -16.398 1.239 19.283 Atomic orbital electron populations 1.70407 1.05861 1.27298 1.43663 1.25083 0.95151 1.00142 0.94036 0.86160 0.79817 0.81977 0.77882 1.19371 1.20584 1.20578 1.20912 0.93837 0.88035 1.56088 0.90324 1.19745 0.88686 0.85664 0.91821 0.89549 1.45846 1.17165 1.10282 1.62018 1.17190 0.86037 0.81814 0.78091 1.90787 1.20665 1.83106 1.47156 1.20579 0.96671 0.95643 1.14508 1.24351 0.92960 0.95626 0.96204 1.77207 1.13382 1.02025 1.18655 1.45491 1.10050 1.07610 1.45930 1.18710 0.97142 0.81399 1.01029 1.21417 0.96141 0.94822 0.97834 1.22138 1.01087 0.94249 0.99281 1.22899 0.88236 1.00615 0.95517 1.67784 1.24296 1.08180 1.16139 1.22670 0.98178 0.90308 0.96185 1.23032 0.91434 0.91064 0.97064 1.23127 0.80903 0.72821 0.87098 1.93071 1.81461 1.48428 1.96969 1.93406 1.68381 1.53791 1.96194 1.92987 1.74433 1.96181 1.55505 0.92144 0.76838 0.78301 0.83125 0.83659 0.81921 0.81770 0.78916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.65 9.50 55.43 0.53 -22.12 16 2 C 0.06 1.65 5.20 -17.82 -0.09 1.56 16 3 Si 0.92 19.73 29.54 -169.99 -5.02 14.71 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.55 -13.68 8.46 -34.44 -0.29 -13.97 16 8 H 0.08 1.83 7.74 -52.48 -0.41 1.42 16 9 C 0.25 5.95 2.21 -69.08 -0.15 5.80 16 10 H 0.09 2.34 7.57 -51.93 -0.39 1.94 16 11 N -0.70 -13.88 4.98 -56.02 -0.28 -14.16 16 12 C 0.58 11.24 7.35 -12.53 -0.09 11.15 16 13 O -0.54 -12.25 15.47 5.27 0.08 -12.16 16 14 C -0.26 -3.94 6.13 -105.05 -0.64 -4.58 16 15 C 0.10 1.25 11.50 -16.95 -0.19 1.05 16 16 N -0.30 -3.85 11.85 30.87 0.37 -3.49 16 17 N -0.32 -3.93 3.77 -10.11 -0.04 -3.97 16 18 C 0.11 1.18 6.70 -83.45 -0.56 0.62 16 19 C -0.07 -0.66 9.77 -39.10 -0.38 -1.04 16 20 C -0.15 -0.95 10.10 -39.47 -0.40 -1.35 16 21 C 0.08 0.61 11.18 -17.53 -0.20 0.41 16 22 N -0.46 -4.44 10.35 -13.09 -0.14 -4.58 16 23 C 0.09 0.85 10.62 -17.34 -0.18 0.66 16 24 C 0.12 1.57 10.62 -16.43 -0.17 1.39 16 25 C 0.42 10.51 2.81 37.16 0.10 10.62 16 26 F -0.22 -5.46 15.68 2.25 0.04 -5.42 16 27 F -0.14 -3.74 12.91 2.25 0.03 -3.71 16 28 F -0.21 -5.07 16.94 2.25 0.04 -5.03 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.40 6.59 7.49 -40.82 -0.31 6.29 16 31 H 0.20 1.94 7.50 -52.49 -0.39 1.54 16 32 H 0.15 1.27 7.77 -52.49 -0.41 0.86 16 33 H 0.15 0.50 8.06 -52.48 -0.42 0.07 16 34 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.17 1.34 6.74 -52.48 -0.35 0.98 16 36 H 0.19 2.08 7.04 -52.49 -0.37 1.71 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -32.28 331.24 -5.27 -37.55 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -2.61 Total: 5.05 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -3.26 Total: 12.33 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.44 Total: -48.31 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 9 Polarization: -14.26 SS G_CDS: 0.10 Total: -14.16 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.28 -5.27 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419863499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.893 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds