Wall clock time and date at job start Sat Apr 11 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48507 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47332 * 300.00107 * 3 2 1 6 6 H 1.48496 * 109.47409 * 60.00535 * 3 2 1 7 7 C 1.37874 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99591 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47614 * 60.00150 * 9 7 2 11 11 N 1.46504 * 109.46926 * 180.02562 * 9 7 2 12 12 C 1.34770 * 120.00089 * 204.99749 * 11 9 7 13 13 O 1.21586 * 119.99945 * 0.02562 * 12 11 9 14 14 C 1.47621 * 120.00406 * 179.97438 * 12 11 9 15 15 C 1.39634 * 120.18507 * 53.86145 * 14 12 11 16 16 C 1.37868 * 119.91378 * 180.30061 * 15 14 12 17 17 C 1.38503 * 120.30037 * 359.67850 * 16 15 14 18 18 C 1.38100 * 120.38752 * 0.02562 * 17 16 15 19 19 C 1.38719 * 120.07565 * 359.97438 * 18 17 16 20 20 N 1.39806 * 120.15298 * 179.97438 * 19 18 17 21 21 C 1.36331 * 126.86690 * 6.34408 * 20 19 18 22 22 C 1.34962 * 106.77424 * 180.22100 * 21 20 19 23 23 N 1.33370 * 109.02043 * 359.63396 * 22 21 20 24 24 N 1.28766 * 109.93166 * 0.37967 * 23 22 21 25 25 C 1.53002 * 109.47175 * 300.00005 * 9 7 2 26 26 F 1.39905 * 109.46890 * 300.00461 * 25 9 7 27 27 F 1.39903 * 109.47164 * 59.99916 * 25 9 7 28 28 F 1.39898 * 109.47014 * 180.02562 * 25 9 7 29 29 H 0.97001 * 119.99981 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99957 * 25.00224 * 11 9 7 31 31 H 1.08003 * 120.04583 * 359.97438 * 15 14 12 32 32 H 1.07999 * 119.84830 * 179.70116 * 16 15 14 33 33 H 1.08001 * 119.80733 * 180.02562 * 17 16 15 34 34 H 1.07997 * 119.96513 * 179.97438 * 18 17 16 35 35 H 1.07995 * 126.60850 * 359.96416 * 21 20 19 36 36 H 1.08004 * 125.48363 * 179.76921 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8122 -0.4937 13 8 0.7166 -4.9702 -0.9391 14 6 2.7963 -5.9342 -0.4943 15 6 3.4304 -6.3163 0.6896 16 6 4.3301 -7.3609 0.6815 17 6 4.6037 -8.0384 -0.4951 18 6 3.9792 -7.6748 -1.6720 19 6 3.0711 -6.6262 -1.6819 20 7 2.4384 -6.2564 -2.8725 21 6 2.5143 -6.8985 -4.0727 22 6 1.7549 -6.1956 -4.9392 23 7 1.2168 -5.1555 -4.3009 24 7 1.5981 -5.1502 -3.0710 25 6 0.3718 -2.5804 1.2490 26 9 1.1767 -2.5065 2.3910 27 9 -0.5372 -1.5170 1.2497 28 9 -0.3272 -3.7922 1.2493 29 1 -0.4850 0.8401 0.0004 30 1 3.0969 -3.4866 0.3545 31 1 3.2202 -5.7909 1.6096 32 1 4.8235 -7.6525 1.5969 33 1 5.3096 -8.8558 -0.4923 34 1 4.1979 -8.2075 -2.5856 35 1 3.0772 -7.7943 -4.2894 36 1 1.6053 -6.4378 -5.9811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433561090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:44 Heat of formation + Delta-G solvation = -20.969293 kcal Electronic energy + Delta-G solvation = -30350.508792 eV Core-core repulsion = 25616.882884 eV Total energy + Delta-G solvation = -4733.625909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.31577 -45.97365 -45.57235 -42.08600 -39.87307 -38.10895 -34.74015 -34.34579 -32.59443 -31.62009 -30.60827 -29.72072 -28.21381 -24.70379 -24.40513 -23.95833 -22.15123 -21.37303 -21.02934 -19.91379 -18.68423 -17.74526 -16.82688 -16.71547 -16.54349 -15.96394 -15.71706 -15.47209 -15.28846 -15.16789 -14.83384 -14.41425 -14.12597 -14.03334 -13.53078 -13.15755 -12.95429 -12.88723 -12.47454 -12.37412 -12.27747 -12.21577 -11.93036 -11.77095 -11.74760 -11.30180 -11.14459 -11.12115 -10.95760 -10.83619 -10.66965 -10.37917 -9.59499 -9.44332 -9.30678 -9.14633 -8.67491 -8.51779 -8.17808 -6.18204 -4.41646 0.39764 0.86241 1.86462 2.18682 2.70266 3.15061 3.21835 3.28192 3.31729 3.52035 3.78995 4.24671 4.25513 4.41540 4.59010 4.65252 4.75346 4.91965 4.98722 5.01425 5.05682 5.18713 5.27731 5.43471 5.59822 5.87498 5.91643 5.93807 6.02511 6.11136 6.22673 6.25862 6.36513 6.80420 7.03390 7.21320 7.53065 7.68940 8.31527 8.33953 8.55476 8.91494 9.25613 10.73619 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.004440 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.503685 B = 6304.657902 C = 7047.994926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.549 4.549 8 H 0.077 0.923 9 C 0.248 3.752 10 H 0.090 0.910 11 N -0.702 5.702 12 C 0.549 3.451 13 O -0.497 6.497 14 C -0.110 4.110 15 C -0.068 4.068 16 C -0.123 4.123 17 C -0.085 4.085 18 C -0.136 4.136 19 C 0.181 3.819 20 N -0.329 5.329 21 C 0.005 3.995 22 C -0.074 4.074 23 N -0.239 5.239 24 N 0.007 4.993 25 C 0.417 3.583 26 F -0.211 7.211 27 F -0.136 7.136 28 F -0.218 7.218 29 H 0.267 0.733 30 H 0.397 0.603 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.191 0.809 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.115 -16.083 -2.464 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.586 4.586 8 H 0.095 0.905 9 C 0.143 3.857 10 H 0.107 0.893 11 N -0.352 5.352 12 C 0.332 3.668 13 O -0.370 6.370 14 C -0.115 4.115 15 C -0.087 4.087 16 C -0.141 4.141 17 C -0.104 4.104 18 C -0.157 4.157 19 C 0.087 3.913 20 N -0.111 5.111 21 C -0.143 4.143 22 C -0.227 4.227 23 N -0.110 5.110 24 N 0.028 4.972 25 C 0.361 3.639 26 F -0.193 7.193 27 F -0.117 7.117 28 F -0.200 7.200 29 H 0.078 0.922 30 H 0.230 0.770 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.208 0.792 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.359 -14.803 -2.199 17.651 hybrid contribution 1.175 -0.178 0.032 1.189 sum 10.533 -14.981 -2.167 18.441 Atomic orbital electron populations 1.70413 1.05829 1.27190 1.43765 1.25070 0.95135 1.00058 0.94093 0.86176 0.79778 0.82102 0.77860 1.19469 1.20546 1.20588 1.20890 0.93729 0.88100 1.55931 0.90521 1.19744 0.88701 0.85529 0.91760 0.89287 1.45948 1.17055 1.10190 1.61970 1.17854 0.87204 0.82598 0.79099 1.90846 1.20097 1.82346 1.43706 1.20026 0.99791 0.99062 0.92652 1.21334 0.93922 0.96504 0.96957 1.21221 0.98252 0.95916 0.98742 1.21089 0.98509 0.99233 0.91530 1.20797 0.97648 0.97101 1.00148 1.17448 0.94782 0.96132 0.82915 1.48121 1.34363 1.21339 1.07275 1.23430 1.04124 1.01441 0.85318 1.23233 1.02258 0.95227 1.02006 1.74485 1.17880 1.18235 1.00414 1.82875 1.03842 1.01283 1.09182 1.23187 0.80912 0.72790 0.87060 1.92980 1.74422 1.96201 1.55651 1.93407 1.68376 1.53748 1.96186 1.93067 1.81539 1.48434 1.96973 0.92202 0.76964 0.84005 0.84614 0.84552 0.84657 0.79212 0.79642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.62 9.50 55.43 0.53 -23.10 16 2 C 0.07 1.74 5.20 -17.82 -0.09 1.65 16 3 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.55 -14.40 8.46 -34.44 -0.29 -14.70 16 8 H 0.08 1.91 7.74 -52.49 -0.41 1.50 16 9 C 0.25 6.36 2.21 -69.08 -0.15 6.21 16 10 H 0.09 2.62 7.58 -51.93 -0.39 2.22 16 11 N -0.70 -14.96 4.96 -55.94 -0.28 -15.24 16 12 C 0.55 11.48 5.52 -12.43 -0.07 11.41 16 13 O -0.50 -12.35 13.02 5.29 0.07 -12.28 16 14 C -0.11 -1.76 5.66 -104.82 -0.59 -2.35 16 15 C -0.07 -0.83 9.71 -39.20 -0.38 -1.21 16 16 C -0.12 -1.07 10.03 -39.62 -0.40 -1.46 16 17 C -0.08 -0.66 10.03 -39.53 -0.40 -1.05 16 18 C -0.14 -1.29 9.47 -39.45 -0.37 -1.67 16 19 C 0.18 2.60 6.69 -83.32 -0.56 2.04 16 20 N -0.33 -5.29 3.82 -10.32 -0.04 -5.33 16 21 C 0.01 0.06 10.92 -16.72 -0.18 -0.12 16 22 C -0.07 -0.98 11.86 -18.05 -0.21 -1.20 16 23 N -0.24 -4.57 12.33 30.09 0.37 -4.20 16 24 N 0.01 0.14 9.50 60.35 0.57 0.71 16 25 C 0.42 10.90 2.81 37.16 0.10 11.00 16 26 F -0.21 -5.20 16.94 2.25 0.04 -5.16 16 27 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 28 F -0.22 -5.68 15.67 2.25 0.04 -5.64 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.40 7.32 8.48 -40.82 -0.35 6.97 16 31 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.14 0.85 6.88 -52.49 -0.36 0.49 16 35 H 0.19 1.16 7.21 -52.49 -0.38 0.78 16 36 H 0.19 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -35.53 326.49 -5.08 -40.61 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -2.71 Total: 4.38 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -3.60 Total: 8.55 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.15 Total: -47.15 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.28 kcal Atomic # 9 Polarization: -14.73 SS G_CDS: 0.10 Total: -14.63 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.53 -5.08 -40.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433561090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.644 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds