Wall clock time and date at job start Sat Apr 11 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48507 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47332 * 300.00107 * 3 2 1 6 6 H 1.48496 * 109.47409 * 60.00535 * 3 2 1 7 7 C 1.37874 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99591 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47614 * 60.00150 * 9 7 2 11 11 N 1.46504 * 109.46926 * 180.02562 * 9 7 2 12 12 C 1.34770 * 120.00089 * 204.99749 * 11 9 7 13 13 O 1.21586 * 119.99945 * 0.02562 * 12 11 9 14 14 C 1.47621 * 120.00406 * 179.97438 * 12 11 9 15 15 C 1.39634 * 120.18507 * 53.86145 * 14 12 11 16 16 C 1.37868 * 119.91378 * 180.30061 * 15 14 12 17 17 C 1.38503 * 120.30037 * 359.67850 * 16 15 14 18 18 C 1.38100 * 120.38752 * 0.02562 * 17 16 15 19 19 C 1.38719 * 120.07565 * 359.97438 * 18 17 16 20 20 N 1.39806 * 120.15298 * 179.97438 * 19 18 17 21 21 C 1.36331 * 126.86690 * 6.34408 * 20 19 18 22 22 C 1.34962 * 106.77424 * 180.22100 * 21 20 19 23 23 N 1.33370 * 109.02043 * 359.63396 * 22 21 20 24 24 N 1.28766 * 109.93166 * 0.37967 * 23 22 21 25 25 C 1.53002 * 109.47175 * 300.00005 * 9 7 2 26 26 F 1.39905 * 109.46890 * 300.00461 * 25 9 7 27 27 F 1.39903 * 109.47164 * 59.99916 * 25 9 7 28 28 F 1.39898 * 109.47014 * 180.02562 * 25 9 7 29 29 H 0.97001 * 119.99981 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99957 * 25.00224 * 11 9 7 31 31 H 1.08003 * 120.04583 * 359.97438 * 15 14 12 32 32 H 1.07999 * 119.84830 * 179.70116 * 16 15 14 33 33 H 1.08001 * 119.80733 * 180.02562 * 17 16 15 34 34 H 1.07997 * 119.96513 * 179.97438 * 18 17 16 35 35 H 1.07995 * 126.60850 * 359.96416 * 21 20 19 36 36 H 1.08004 * 125.48363 * 179.76921 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8122 -0.4937 13 8 0.7166 -4.9702 -0.9391 14 6 2.7963 -5.9342 -0.4943 15 6 3.4304 -6.3163 0.6896 16 6 4.3301 -7.3609 0.6815 17 6 4.6037 -8.0384 -0.4951 18 6 3.9792 -7.6748 -1.6720 19 6 3.0711 -6.6262 -1.6819 20 7 2.4384 -6.2564 -2.8725 21 6 2.5143 -6.8985 -4.0727 22 6 1.7549 -6.1956 -4.9392 23 7 1.2168 -5.1555 -4.3009 24 7 1.5981 -5.1502 -3.0710 25 6 0.3718 -2.5804 1.2490 26 9 1.1767 -2.5065 2.3910 27 9 -0.5372 -1.5170 1.2497 28 9 -0.3272 -3.7922 1.2493 29 1 -0.4850 0.8401 0.0004 30 1 3.0969 -3.4866 0.3545 31 1 3.2202 -5.7909 1.6096 32 1 4.8235 -7.6525 1.5969 33 1 5.3096 -8.8558 -0.4923 34 1 4.1979 -8.2075 -2.5856 35 1 3.0772 -7.7943 -4.2894 36 1 1.6053 -6.4378 -5.9811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433561090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:44 Heat of formation + Delta-G solvation = -47.296356 kcal Electronic energy + Delta-G solvation = -30351.650419 eV Core-core repulsion = 25616.882884 eV Total energy + Delta-G solvation = -4734.767536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.46969 -48.10253 -47.77463 -43.16570 -41.07642 -39.41917 -36.50618 -35.49561 -34.48542 -32.70567 -31.62677 -30.74302 -29.99074 -26.66346 -25.70612 -24.90811 -23.73846 -22.53343 -22.30836 -21.41024 -19.94230 -19.16538 -18.90802 -18.71547 -18.40169 -17.62529 -16.95563 -16.77848 -16.49110 -16.44081 -16.15880 -15.78343 -15.22626 -15.20171 -15.01862 -14.89623 -14.63853 -14.53203 -14.42605 -14.32471 -14.09689 -14.01831 -13.88152 -13.17939 -13.04857 -12.78868 -12.69238 -12.54600 -12.28521 -12.20444 -12.13898 -12.06340 -11.57109 -10.92197 -10.72797 -10.37659 -10.12949 -9.98995 -9.49112 -8.23926 -6.55421 -0.55887 0.04510 0.91550 1.23962 1.42137 1.42901 1.56491 1.62663 1.77854 2.15081 2.35880 2.48479 2.67560 2.90998 3.34079 3.57921 3.64121 3.76697 3.83464 3.91989 4.08769 4.14771 4.18601 4.26294 4.30834 4.37688 4.61793 4.77457 4.93159 5.11742 5.21384 5.29192 5.36914 5.38994 5.52746 5.61961 5.62528 5.93703 6.48771 6.67938 7.13457 7.19845 7.36886 8.69503 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.004440 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.503685 B = 6304.657902 C = 7047.994926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.013 3.987 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.561 4.561 8 H 0.089 0.911 9 C 0.259 3.741 10 H 0.037 0.963 11 N -0.700 5.700 12 C 0.548 3.452 13 O -0.546 6.546 14 C -0.149 4.149 15 C -0.078 4.078 16 C -0.107 4.107 17 C -0.062 4.062 18 C -0.120 4.120 19 C 0.147 3.853 20 N -0.331 5.331 21 C 0.033 3.967 22 C -0.086 4.086 23 N -0.290 5.290 24 N -0.081 5.081 25 C 0.417 3.583 26 F -0.200 7.200 27 F -0.150 7.150 28 F -0.220 7.220 29 H 0.269 0.731 30 H 0.409 0.591 31 H 0.138 0.862 32 H 0.175 0.825 33 H 0.189 0.811 34 H 0.179 0.821 35 H 0.256 0.744 36 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.445 -19.272 -2.445 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.597 4.597 8 H 0.107 0.893 9 C 0.152 3.848 10 H 0.055 0.945 11 N -0.351 5.351 12 C 0.334 3.666 13 O -0.423 6.423 14 C -0.154 4.154 15 C -0.097 4.097 16 C -0.125 4.125 17 C -0.081 4.081 18 C -0.140 4.140 19 C 0.054 3.946 20 N -0.114 5.114 21 C -0.116 4.116 22 C -0.242 4.242 23 N -0.159 5.159 24 N -0.058 5.058 25 C 0.360 3.640 26 F -0.182 7.182 27 F -0.132 7.132 28 F -0.202 7.202 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.156 0.844 32 H 0.192 0.808 33 H 0.206 0.794 34 H 0.196 0.804 35 H 0.272 0.728 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 13.717 -17.991 -2.140 22.725 hybrid contribution -0.072 0.561 0.013 0.566 sum 13.645 -17.430 -2.127 22.238 Atomic orbital electron populations 1.70557 1.07592 1.28103 1.44747 1.26054 0.95941 1.03847 0.93375 0.85083 0.79054 0.77218 0.77785 1.17860 1.20413 1.20091 1.21221 0.94339 0.88415 1.55764 0.89306 1.19198 0.88811 0.87367 0.89434 0.94475 1.45804 1.16812 1.09771 1.62673 1.18668 0.87579 0.83245 0.77065 1.90797 1.22770 1.83319 1.45364 1.19769 1.01357 0.98790 0.95485 1.21449 0.94795 0.98057 0.95426 1.21696 0.96108 0.93709 1.01012 1.21754 0.97364 0.99019 0.89913 1.21360 0.95104 0.94778 1.02762 1.17993 0.96764 0.98024 0.81819 1.48355 1.33335 1.20668 1.09002 1.24495 1.02330 1.01786 0.83023 1.24064 1.01995 0.94126 1.03971 1.74405 1.19524 1.21062 1.00952 1.82848 1.07894 1.04959 1.10133 1.23218 0.80797 0.72302 0.87656 1.92980 1.74026 1.96147 1.55030 1.93374 1.68969 1.54497 1.96314 1.93056 1.81664 1.48493 1.97026 0.92155 0.75508 0.84403 0.80809 0.79364 0.80406 0.72810 0.75849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.69 9.50 21.45 0.20 -51.49 16 2 C 0.01 0.70 5.20 84.65 0.44 1.14 16 3 Si 0.99 42.91 29.54 68.60 2.03 44.94 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.56 -30.57 8.46 25.60 0.22 -30.35 16 8 H 0.09 4.50 7.74 -2.91 -0.02 4.47 16 9 C 0.26 14.25 2.21 44.25 0.10 14.34 16 10 H 0.04 2.43 7.58 -2.39 -0.02 2.41 16 11 N -0.70 -31.88 4.96 -449.18 -2.23 -34.11 16 12 C 0.55 24.58 5.52 86.72 0.48 25.06 16 13 O -0.55 -29.74 13.02 -3.99 -0.05 -29.79 16 14 C -0.15 -4.82 5.66 -19.99 -0.11 -4.94 16 15 C -0.08 -1.79 9.71 22.52 0.22 -1.57 16 16 C -0.11 -1.34 10.03 22.25 0.22 -1.11 16 17 C -0.06 -0.54 10.03 22.30 0.22 -0.32 16 18 C -0.12 -1.64 9.47 22.35 0.21 -1.43 16 19 C 0.15 4.00 6.69 38.45 0.26 4.26 16 20 N -0.33 -10.60 3.82 -186.57 -0.71 -11.31 16 21 C 0.03 0.68 10.92 83.24 0.91 1.59 16 22 C -0.09 -2.24 11.86 83.71 0.99 -1.25 16 23 N -0.29 -11.88 12.33 -58.72 -0.72 -12.60 16 24 N -0.08 -3.66 9.50 37.02 0.35 -3.30 16 25 C 0.42 23.06 2.81 71.98 0.20 23.26 16 26 F -0.20 -10.18 16.94 44.97 0.76 -9.42 16 27 F -0.15 -9.01 12.91 44.97 0.58 -8.43 16 28 F -0.22 -12.24 15.67 44.97 0.70 -11.53 16 29 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.41 15.92 8.48 -92.71 -0.79 15.13 16 31 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 32 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 33 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 34 H 0.18 0.85 6.88 -2.91 -0.02 0.83 16 35 H 0.26 1.45 7.21 -2.91 -0.02 1.43 16 36 H 0.23 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -90.26 326.49 5.66 -84.60 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.39 Total: 13.76 kcal Atomic # 6 Polarization: 24.33 SS G_CDS: 4.36 Total: 28.69 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -3.11 Total: -112.81 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.05 Total: -29.79 kcal Atomic # 9 Polarization: -31.43 SS G_CDS: 2.05 Total: -29.38 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -90.26 5.66 -84.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433561090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.306 kcal (2) G-P(sol) polarization free energy of solvation -90.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds