Wall clock time and date at job start Sat Apr 11 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39664 * 127.32272 * 2 1 4 4 C 1.50703 * 126.06648 * 0.02562 * 3 2 1 5 5 F 1.39904 * 109.46984 * 184.71864 * 4 3 2 6 6 F 1.39904 * 109.46903 * 304.71369 * 4 3 2 7 7 F 1.39893 * 109.47288 * 64.71544 * 4 3 2 8 8 N 1.30867 * 107.86654 * 179.74514 * 3 2 1 9 9 N 1.28449 * 110.93349 * 0.22720 * 8 3 2 10 10 H 0.96996 * 125.19189 * 179.97438 * 9 8 3 11 11 C 1.36614 * 109.61659 * 0.02562 * 9 8 3 12 12 C 1.47109 * 126.88566 * 180.02562 * 11 9 8 13 13 O 1.21637 * 119.99767 * 179.97438 * 12 11 9 14 14 N 1.34778 * 120.00355 * 359.96625 * 12 11 9 15 15 C 1.39361 * 119.99899 * 175.14495 * 14 12 11 16 16 C 1.38633 * 119.57633 * 184.96205 * 15 14 12 17 17 C 1.40803 * 118.79127 * 179.78043 * 16 15 14 18 18 C 1.41541 * 120.99871 * 180.25820 * 17 16 15 19 19 H 1.07996 * 120.00365 * 203.86216 * 18 17 16 20 20 C 1.40036 * 119.99978 * 23.85606 * 18 17 16 21 21 N 1.30740 * 119.99735 * 16.86665 * 20 18 17 22 22 Si 1.86795 * 120.00034 * 196.86602 * 20 18 17 23 23 H 1.48497 * 109.47422 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47032 * 119.99877 * 22 20 18 25 25 H 1.48498 * 109.47053 * 239.99714 * 22 20 18 26 26 C 1.41185 * 118.00668 * 0.47866 * 17 16 15 27 27 C 1.37582 * 119.02150 * 359.75973 * 26 17 16 28 28 N 1.32080 * 121.11358 * 359.97438 * 27 26 17 29 29 H 1.09001 * 109.46940 * 90.02678 * 1 2 3 30 30 H 1.08998 * 109.47300 * 210.03157 * 1 2 3 31 31 H 1.09001 * 109.47127 * 330.02730 * 1 2 3 32 32 H 0.97000 * 119.99521 * 355.14489 * 14 12 11 33 33 H 1.08003 * 120.60671 * 359.97438 * 16 15 14 34 34 H 0.97001 * 120.00033 * 180.02562 * 21 20 18 35 35 H 1.07997 * 120.48943 * 179.78242 * 26 17 16 36 36 H 1.08007 * 119.44311 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 6 1.9230 2.5548 0.0005 5 9 3.0493 3.3775 -0.1081 6 9 1.0695 2.7872 -1.0834 7 9 1.2503 2.8403 1.1934 8 7 3.5877 0.6748 0.0055 9 7 3.6208 -0.6093 0.0044 10 1 4.4277 -1.1477 0.0074 11 6 2.3463 -1.1010 -0.0029 12 6 1.9459 -2.5165 -0.0060 13 8 0.7668 -2.8151 -0.0122 14 7 2.8856 -3.4827 -0.0022 15 6 2.5089 -4.8207 0.0971 16 6 3.4842 -5.8001 0.2043 17 6 3.0849 -7.1463 0.3083 18 6 4.0411 -8.1833 0.4255 19 1 3.7869 -9.1888 0.1246 20 6 5.3170 -7.9054 0.9314 21 7 5.5306 -6.7988 1.5942 22 14 6.7136 -9.1157 0.6595 23 1 6.2154 -10.2807 -0.1149 24 1 7.8052 -8.4502 -0.0959 25 1 7.2307 -9.5780 1.9725 26 6 1.7023 -7.4312 0.2875 27 6 0.8083 -6.3918 0.1726 28 7 1.2235 -5.1412 0.0828 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 3.8241 -3.2466 -0.0685 33 1 4.5312 -5.5351 0.2111 34 1 6.4144 -6.6061 1.9443 35 1 1.3516 -8.4500 0.3611 36 1 -0.2510 -6.6020 0.1564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001445585371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:49 Heat of formation + Delta-G solvation = -74.468604 kcal Electronic energy + Delta-G solvation = -28441.215705 eV Core-core repulsion = 23705.269892 eV Total energy + Delta-G solvation = -4735.945813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.31330 -47.82771 -47.81143 -43.09221 -39.69668 -37.89831 -34.77345 -34.11432 -33.47896 -32.07457 -30.70438 -29.04008 -27.60584 -26.71898 -26.15838 -23.74600 -22.16496 -21.84710 -20.92934 -20.11100 -18.92279 -18.71843 -18.43563 -17.92595 -17.63416 -16.33316 -16.20149 -15.57506 -15.35660 -14.71089 -14.62792 -14.50251 -14.37283 -14.27190 -14.23337 -14.00263 -13.96177 -13.95112 -13.44093 -13.07437 -13.02947 -12.76221 -12.75234 -12.48758 -12.37819 -11.59230 -11.33723 -11.17551 -11.03774 -10.46147 -10.31710 -10.09733 -9.99348 -9.83983 -9.51638 -9.18699 -8.17267 -7.94968 -7.25585 -6.98272 -4.76208 0.94440 1.67397 1.99035 2.50395 2.60904 2.64405 2.93042 2.98055 3.09197 3.11382 3.44418 3.45111 3.73465 3.75842 4.19610 4.43903 4.51131 4.58146 4.82830 4.98664 5.50927 5.58502 5.65444 5.74209 5.85296 6.22187 6.30892 6.36647 6.48319 6.64969 6.75974 6.93600 7.17458 7.24510 7.28053 7.51537 7.71818 7.96660 8.20187 8.44409 8.57157 8.61245 9.47591 9.90751 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.002559 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.077537 B =10939.431728 C =12067.480980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.078 4.078 3 C -0.075 4.075 4 C 0.563 3.437 5 F -0.168 7.168 6 F -0.167 7.167 7 F -0.168 7.168 8 N -0.213 5.213 9 N -0.356 5.356 10 H 0.455 0.545 11 C -0.023 4.023 12 C 0.574 3.426 13 O -0.448 6.448 14 N -0.651 5.651 15 C 0.334 3.666 16 C -0.240 4.240 17 C 0.143 3.857 18 C -0.452 4.452 19 H 0.084 0.916 20 C 0.078 3.922 21 N -0.786 5.786 22 Si 0.912 3.088 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.273 1.273 26 C -0.280 4.280 27 C 0.121 3.879 28 N -0.555 5.555 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.402 0.598 33 H 0.128 0.872 34 H 0.282 0.718 35 H 0.104 0.896 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 13.478 -2.353 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.233 4.233 4 C 0.507 3.493 5 F -0.149 7.149 6 F -0.148 7.148 7 F -0.149 7.149 8 N -0.049 5.049 9 N -0.075 5.075 10 H 0.302 0.698 11 C -0.150 4.150 12 C 0.356 3.644 13 O -0.314 6.314 14 N -0.297 5.297 15 C 0.110 3.890 16 C -0.266 4.266 17 C 0.135 3.865 18 C -0.483 4.483 19 H 0.103 0.897 20 C -0.141 4.141 21 N -0.412 5.412 22 Si 0.736 3.264 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.304 4.304 27 C -0.032 4.032 28 N -0.275 5.275 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.236 0.764 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.147 14.489 -2.281 14.712 hybrid contribution 1.731 -1.392 0.095 2.223 sum 0.584 13.097 -2.186 13.291 Atomic orbital electron populations 1.20434 0.86689 1.04231 1.03586 1.20454 0.97792 0.88486 1.02092 1.21527 0.91460 0.93979 1.16382 1.16688 0.74956 0.83651 0.74050 1.93225 1.51519 1.74418 1.95745 1.93238 1.71233 1.95081 1.55239 1.93236 1.80790 1.94189 1.46695 1.73015 1.21612 0.94302 1.15945 1.43661 1.08520 1.03759 1.51576 0.69839 1.21981 0.84577 0.95688 1.12764 1.16880 0.86638 0.81749 0.79134 1.90932 1.15794 1.80511 1.44180 1.43199 1.09156 1.05035 1.72304 1.18032 0.90943 0.81855 0.98160 1.21516 0.98367 0.92532 1.14171 1.17566 0.91387 0.91956 0.85605 1.19640 0.95488 0.96281 1.36873 0.89747 1.25981 1.00082 0.96000 0.92077 1.69773 1.23821 1.23872 1.23703 0.86192 0.80043 0.81002 0.79180 1.18180 1.19559 1.19787 1.21929 0.94149 0.98711 1.15633 1.21765 0.98172 0.87390 0.95910 1.67165 1.14779 1.21242 1.24269 0.90039 0.88641 0.91204 0.76351 0.85447 0.90660 0.87761 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.75 36.01 0.35 -0.77 16 2 C -0.08 -1.05 6.29 -104.02 -0.65 -1.71 16 3 C -0.08 -0.97 6.50 -82.47 -0.54 -1.50 16 4 C 0.56 6.55 3.29 36.01 0.12 6.67 16 5 F -0.17 -1.98 17.15 2.25 0.04 -1.94 16 6 F -0.17 -1.87 17.30 2.25 0.04 -1.83 16 7 F -0.17 -1.92 17.10 2.25 0.04 -1.88 16 8 N -0.21 -2.67 11.93 33.64 0.40 -2.26 16 9 N -0.36 -4.00 6.85 33.47 0.23 -3.77 16 10 H 0.45 3.55 8.23 -190.46 -1.57 1.99 16 11 C -0.02 -0.31 7.15 -82.06 -0.59 -0.90 16 12 C 0.57 9.93 7.76 -12.66 -0.10 9.83 16 13 O -0.45 -9.24 13.31 5.24 0.07 -9.17 16 14 N -0.65 -11.37 5.38 -12.56 -0.07 -11.43 16 15 C 0.33 7.43 7.41 -154.79 -1.15 6.29 16 16 C -0.24 -5.63 8.62 -38.47 -0.33 -5.96 16 17 C 0.14 3.53 5.60 -106.55 -0.60 2.93 16 18 C -0.45 -10.95 9.12 -37.65 -0.34 -11.29 16 19 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 20 C 0.08 1.77 5.20 -17.34 -0.09 1.68 16 21 N -0.79 -18.14 10.93 55.55 0.61 -17.53 16 22 Si 0.91 16.91 29.59 -169.99 -5.03 11.88 16 23 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 24 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 25 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 26 C -0.28 -6.46 9.90 -38.70 -0.38 -6.84 16 27 C 0.12 2.72 11.15 -17.68 -0.20 2.52 16 28 N -0.56 -13.12 7.84 -12.54 -0.10 -13.22 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.32 6.69 -51.93 -0.35 0.97 16 31 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 32 H 0.40 5.41 7.89 -40.82 -0.32 5.08 16 33 H 0.13 2.93 6.20 -52.48 -0.33 2.61 16 34 H 0.28 5.86 8.29 -40.82 -0.34 5.52 16 35 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.13 2.44 8.06 -52.48 -0.42 2.02 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -29.36 333.78 -7.03 -36.39 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -3.79 Total: 8.80 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -4.50 Total: 0.95 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 1.07 Total: -48.22 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.12 Total: -5.65 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.36 -7.03 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445585371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.077 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds