Wall clock time and date at job start Sat Apr 11 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39664 * 127.32272 * 2 1 4 4 C 1.50703 * 126.06648 * 0.02562 * 3 2 1 5 5 F 1.39904 * 109.46984 * 184.71864 * 4 3 2 6 6 F 1.39904 * 109.46903 * 304.71369 * 4 3 2 7 7 F 1.39893 * 109.47288 * 64.71544 * 4 3 2 8 8 N 1.30867 * 107.86654 * 179.74514 * 3 2 1 9 9 N 1.28449 * 110.93349 * 0.22720 * 8 3 2 10 10 H 0.96996 * 125.19189 * 179.97438 * 9 8 3 11 11 C 1.36614 * 109.61659 * 0.02562 * 9 8 3 12 12 C 1.47109 * 126.88566 * 180.02562 * 11 9 8 13 13 O 1.21637 * 119.99767 * 179.97438 * 12 11 9 14 14 N 1.34778 * 120.00355 * 359.96625 * 12 11 9 15 15 C 1.39361 * 119.99899 * 175.14495 * 14 12 11 16 16 C 1.38633 * 119.57633 * 184.96205 * 15 14 12 17 17 C 1.40803 * 118.79127 * 179.78043 * 16 15 14 18 18 C 1.41541 * 120.99871 * 180.25820 * 17 16 15 19 19 H 1.07996 * 120.00365 * 203.86216 * 18 17 16 20 20 C 1.40036 * 119.99978 * 23.85606 * 18 17 16 21 21 N 1.30740 * 119.99735 * 16.86665 * 20 18 17 22 22 Si 1.86795 * 120.00034 * 196.86602 * 20 18 17 23 23 H 1.48497 * 109.47422 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47032 * 119.99877 * 22 20 18 25 25 H 1.48498 * 109.47053 * 239.99714 * 22 20 18 26 26 C 1.41185 * 118.00668 * 0.47866 * 17 16 15 27 27 C 1.37582 * 119.02150 * 359.75973 * 26 17 16 28 28 N 1.32080 * 121.11358 * 359.97438 * 27 26 17 29 29 H 1.09001 * 109.46940 * 90.02678 * 1 2 3 30 30 H 1.08998 * 109.47300 * 210.03157 * 1 2 3 31 31 H 1.09001 * 109.47127 * 330.02730 * 1 2 3 32 32 H 0.97000 * 119.99521 * 355.14489 * 14 12 11 33 33 H 1.08003 * 120.60671 * 359.97438 * 16 15 14 34 34 H 0.97001 * 120.00033 * 180.02562 * 21 20 18 35 35 H 1.07997 * 120.48943 * 179.78242 * 26 17 16 36 36 H 1.08007 * 119.44311 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 6 1.9230 2.5548 0.0005 5 9 3.0493 3.3775 -0.1081 6 9 1.0695 2.7872 -1.0834 7 9 1.2503 2.8403 1.1934 8 7 3.5877 0.6748 0.0055 9 7 3.6208 -0.6093 0.0044 10 1 4.4277 -1.1477 0.0074 11 6 2.3463 -1.1010 -0.0029 12 6 1.9459 -2.5165 -0.0060 13 8 0.7668 -2.8151 -0.0122 14 7 2.8856 -3.4827 -0.0022 15 6 2.5089 -4.8207 0.0971 16 6 3.4842 -5.8001 0.2043 17 6 3.0849 -7.1463 0.3083 18 6 4.0411 -8.1833 0.4255 19 1 3.7869 -9.1888 0.1246 20 6 5.3170 -7.9054 0.9314 21 7 5.5306 -6.7988 1.5942 22 14 6.7136 -9.1157 0.6595 23 1 6.2154 -10.2807 -0.1149 24 1 7.8052 -8.4502 -0.0959 25 1 7.2307 -9.5780 1.9725 26 6 1.7023 -7.4312 0.2875 27 6 0.8083 -6.3918 0.1726 28 7 1.2235 -5.1412 0.0828 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 3.8241 -3.2466 -0.0685 33 1 4.5312 -5.5351 0.2111 34 1 6.4144 -6.6061 1.9443 35 1 1.3516 -8.4500 0.3611 36 1 -0.2510 -6.6020 0.1564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001445585371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:48 Heat of formation + Delta-G solvation = -91.699449 kcal Electronic energy + Delta-G solvation = -28441.962890 eV Core-core repulsion = 23705.269892 eV Total energy + Delta-G solvation = -4736.692998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.22564 -48.73230 -48.72534 -44.13804 -41.23922 -39.52911 -36.32086 -35.74043 -34.60558 -33.20188 -32.46352 -30.60927 -28.73779 -27.93828 -27.68322 -25.08528 -23.89953 -23.03106 -22.25729 -21.39642 -20.15719 -19.62978 -19.57105 -19.39971 -18.63023 -17.88466 -17.29285 -17.10059 -16.84769 -16.10006 -15.99906 -15.80064 -15.60895 -15.52966 -15.46014 -15.14003 -14.87416 -14.85784 -14.68761 -14.48927 -14.38235 -14.21429 -13.98214 -13.72413 -13.41145 -13.21696 -12.94301 -12.68871 -12.20997 -12.12635 -11.92342 -11.64206 -11.35766 -11.19627 -11.05321 -10.27061 -9.97853 -9.70036 -8.95246 -8.69020 -6.58202 -0.21129 0.61861 0.84636 0.96922 1.05373 1.41774 1.53168 1.54973 1.56487 1.85478 2.03372 2.19018 2.47296 2.77310 2.78379 3.27928 3.29119 3.57192 3.70516 3.72068 3.91729 4.19400 4.54630 4.68905 4.71045 4.73968 4.85627 4.90754 5.01864 5.19933 5.25669 5.43437 5.46948 5.53306 5.87246 6.04170 6.27731 6.35599 6.49129 6.75101 6.80548 6.99885 7.74429 8.22758 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.002559 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.077537 B =10939.431728 C =12067.480980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.076 4.076 3 C -0.083 4.083 4 C 0.569 3.431 5 F -0.168 7.168 6 F -0.163 7.163 7 F -0.166 7.166 8 N -0.207 5.207 9 N -0.335 5.335 10 H 0.469 0.531 11 C -0.034 4.034 12 C 0.579 3.421 13 O -0.483 6.483 14 N -0.643 5.643 15 C 0.334 3.666 16 C -0.256 4.256 17 C 0.114 3.886 18 C -0.481 4.481 19 H 0.083 0.917 20 C 0.043 3.957 21 N -0.808 5.808 22 Si 0.984 3.016 23 H -0.260 1.260 24 H -0.261 1.261 25 H -0.267 1.267 26 C -0.296 4.296 27 C 0.117 3.883 28 N -0.576 5.576 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.420 0.580 33 H 0.127 0.873 34 H 0.293 0.707 35 H 0.116 0.884 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 14.257 -2.467 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.241 4.241 4 C 0.513 3.487 5 F -0.149 7.149 6 F -0.144 7.144 7 F -0.147 7.147 8 N -0.044 5.044 9 N -0.058 5.058 10 H 0.319 0.681 11 C -0.161 4.161 12 C 0.363 3.637 13 O -0.352 6.352 14 N -0.290 5.290 15 C 0.109 3.891 16 C -0.281 4.281 17 C 0.106 3.894 18 C -0.512 4.512 19 H 0.102 0.898 20 C -0.175 4.175 21 N -0.433 5.433 22 Si 0.805 3.195 23 H -0.183 1.183 24 H -0.186 1.186 25 H -0.192 1.192 26 C -0.319 4.319 27 C -0.036 4.036 28 N -0.296 5.296 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.257 0.743 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.002 15.295 -2.394 15.481 hybrid contribution 1.362 -1.560 0.153 2.077 sum 1.364 13.735 -2.241 13.983 Atomic orbital electron populations 1.20460 0.86015 1.04245 1.04142 1.20682 0.98473 0.88534 1.01014 1.21656 0.91268 0.94461 1.16678 1.16520 0.74969 0.83049 0.74190 1.93227 1.51602 1.74316 1.95760 1.93249 1.71083 1.95004 1.55080 1.93243 1.80718 1.94117 1.46613 1.73020 1.21553 0.94477 1.15337 1.43670 1.08321 1.03491 1.50310 0.68091 1.21383 0.85886 0.93867 1.14977 1.17138 0.86007 0.82703 0.77815 1.90912 1.17238 1.81400 1.45677 1.43104 1.10421 1.03543 1.71976 1.18222 0.90442 0.83542 0.96910 1.21507 0.98506 0.92641 1.15464 1.17987 0.92371 0.92877 0.86179 1.19893 0.96815 0.96319 1.38148 0.89847 1.26761 1.01765 0.97798 0.91187 1.69789 1.25003 1.25074 1.23483 0.85113 0.76755 0.78518 0.79124 1.18312 1.18569 1.19227 1.22112 0.93931 0.99580 1.16311 1.22210 0.99457 0.87063 0.94918 1.67298 1.15424 1.21775 1.25137 0.89173 0.90423 0.89320 0.74280 0.85545 0.89584 0.86613 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.12 9.75 71.24 0.69 -1.43 16 2 C -0.08 -1.96 6.29 -19.47 -0.12 -2.08 16 3 C -0.08 -1.98 6.50 43.05 0.28 -1.70 16 4 C 0.57 12.11 3.29 71.24 0.23 12.35 16 5 F -0.17 -3.63 17.15 44.97 0.77 -2.86 16 6 F -0.16 -3.33 17.30 44.97 0.78 -2.55 16 7 F -0.17 -3.46 17.10 44.97 0.77 -2.69 16 8 N -0.21 -4.75 11.93 -47.50 -0.57 -5.31 16 9 N -0.34 -6.93 6.85 -48.01 -0.33 -7.26 16 10 H 0.47 6.41 8.23 -220.01 -1.81 4.60 16 11 C -0.03 -0.90 7.15 40.78 0.29 -0.60 16 12 C 0.58 19.84 7.76 86.57 0.67 20.51 16 13 O -0.48 -20.07 13.31 -4.15 -0.06 -20.13 16 14 N -0.64 -22.27 5.38 -311.90 -1.68 -23.95 16 15 C 0.33 14.99 7.41 132.80 0.98 15.97 16 16 C -0.26 -12.16 8.62 22.99 0.20 -11.96 16 17 C 0.11 5.73 5.60 -21.11 -0.12 5.62 16 18 C -0.48 -23.60 9.12 23.52 0.21 -23.38 16 19 H 0.08 3.95 7.90 -2.91 -0.02 3.93 16 20 C 0.04 1.92 5.20 85.29 0.44 2.36 16 21 N -0.81 -37.02 10.93 21.84 0.24 -36.79 16 22 Si 0.98 33.93 29.59 68.60 2.03 35.96 16 23 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 24 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 25 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 26 C -0.30 -13.83 9.90 22.84 0.23 -13.60 16 27 C 0.12 5.27 11.15 84.50 0.94 6.21 16 28 N -0.58 -27.45 7.84 -193.59 -1.52 -28.97 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.13 6.69 -2.39 -0.02 2.11 16 31 H 0.09 1.68 7.87 -2.39 -0.02 1.67 16 32 H 0.42 10.98 7.89 -92.71 -0.73 10.25 16 33 H 0.13 5.90 6.20 -2.91 -0.02 5.88 16 34 H 0.29 11.90 8.29 -92.71 -0.77 11.13 16 35 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 36 H 0.15 5.82 8.06 -2.91 -0.02 5.80 16 Total: -1.00 -62.44 333.78 4.05 -58.40 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -1.33 Total: 27.90 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 4.94 Total: 8.26 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -3.85 Total: -102.28 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.06 Total: -20.13 kcal Atomic # 9 Polarization: -10.43 SS G_CDS: 2.32 Total: -8.11 kcal Atomic # 14 Polarization: 33.93 SS G_CDS: 2.03 Total: 35.96 kcal Total: -62.44 4.05 -58.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445585371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.302 kcal (2) G-P(sol) polarization free energy of solvation -62.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds