Wall clock time and date at job start Sat Apr 11 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99719 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99801 * 3 2 1 5 5 H 1.48492 * 109.47321 * 30.00730 * 3 2 1 6 6 H 1.48507 * 109.46867 * 150.00156 * 3 2 1 7 7 C 1.37877 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99345 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00384 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00064 * 9 7 2 11 11 N 1.46500 * 109.46939 * 179.97438 * 9 7 2 12 12 C 1.34780 * 119.99910 * 205.00060 * 11 9 7 13 13 O 1.21544 * 119.99730 * 0.02562 * 12 11 9 14 14 C 1.47937 * 119.99920 * 180.02562 * 12 11 9 15 15 C 1.39501 * 119.59053 * 179.97438 * 14 12 11 16 16 C 1.38234 * 119.18276 * 179.97438 * 15 14 12 17 17 C 1.39785 * 118.38957 * 0.02562 * 16 15 14 18 18 C 1.48270 * 120.43756 * 180.02562 * 17 16 15 19 19 C 1.40950 * 126.24607 * 359.68609 * 18 17 16 20 20 N 1.30628 * 108.06776 * 179.85405 * 19 18 17 21 21 N 1.39995 * 108.56998 * 0.41097 * 20 19 18 22 22 H 0.97001 * 125.87240 * 179.74126 * 21 20 19 23 23 C 1.34715 * 108.25850 * 359.73337 * 21 20 19 24 24 C 1.39738 * 119.12277 * 0.02562 * 17 16 15 25 25 N 1.31306 * 120.73090 * 359.72059 * 24 17 16 26 26 C 1.52997 * 109.47078 * 300.00152 * 9 7 2 27 27 F 1.39905 * 109.47157 * 299.99776 * 26 9 7 28 28 F 1.39900 * 109.47010 * 180.02562 * 26 9 7 29 29 F 1.39897 * 109.47422 * 59.99858 * 26 9 7 30 30 H 0.97006 * 120.00331 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99975 * 25.00437 * 11 9 7 32 32 H 1.07998 * 120.41122 * 359.97438 * 15 14 12 33 33 H 1.07997 * 120.80292 * 179.97438 * 16 15 14 34 34 H 1.07999 * 125.96697 * 359.97438 * 19 18 17 35 35 H 1.08002 * 126.20136 * 180.02562 * 23 21 20 36 36 H 1.07999 * 119.63412 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0018 12 6 1.8365 -4.8121 -0.4953 13 8 0.7163 -4.9697 -0.9398 14 6 2.7977 -5.9367 -0.4961 15 6 2.4092 -7.1746 -1.0085 16 6 3.3143 -8.2194 -1.0055 17 6 4.5912 -7.9911 -0.4847 18 6 5.5978 -9.0795 -0.4596 19 6 5.4107 -10.3985 -0.9199 20 7 6.5242 -11.0550 -0.7317 21 7 7.4556 -10.1930 -0.1407 22 1 8.3638 -10.4234 0.1104 23 6 6.8739 -8.9885 0.0191 24 6 4.9065 -6.7236 0.0120 25 7 4.0212 -5.7542 -0.0124 26 6 0.3718 -2.5805 1.2490 27 9 1.1766 -2.5067 2.3910 28 9 -0.3272 -3.7923 1.2493 29 9 -0.5373 -1.5172 1.2496 30 1 -0.4851 0.8401 0.0004 31 1 3.0970 -3.4867 0.3526 32 1 1.4136 -7.3150 -1.4027 33 1 3.0411 -9.1888 -1.3954 34 1 4.5054 -10.7963 -1.3542 35 1 7.3333 -8.1101 0.4477 36 1 5.8907 -6.5380 0.4159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455988593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:56 Heat of formation + Delta-G solvation = -60.438019 kcal Electronic energy + Delta-G solvation = -28749.003985 eV Core-core repulsion = 24013.666584 eV Total energy + Delta-G solvation = -4735.337401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.31845 -45.97048 -45.58463 -41.67054 -40.22625 -38.38141 -34.70394 -33.63546 -32.49650 -32.03487 -31.75240 -29.45271 -28.07182 -24.70330 -24.34067 -24.06748 -21.90417 -21.78330 -20.71667 -19.99964 -18.58949 -18.22961 -16.89144 -16.77018 -16.58824 -16.29087 -15.72625 -15.39340 -15.15992 -15.04936 -14.90331 -14.55400 -14.48929 -14.01710 -13.56084 -13.31913 -13.12486 -12.94631 -12.87928 -12.47737 -12.36875 -12.25060 -12.11380 -11.93957 -11.78383 -11.28918 -11.17048 -10.82678 -10.80612 -10.51573 -10.40063 -10.14404 -9.86536 -9.64673 -9.63542 -9.25921 -8.69771 -8.32710 -8.14159 -6.21444 -4.44792 0.46425 1.23270 1.51047 2.37579 2.40294 3.20617 3.25644 3.27635 3.30621 3.68927 4.09750 4.14058 4.22933 4.32125 4.40759 4.60221 4.68027 4.72943 4.95485 4.97953 4.99181 5.10458 5.30788 5.55847 5.70200 5.84126 5.89984 5.98845 6.03858 6.13790 6.25651 6.55471 6.73839 6.93730 7.15006 7.18002 7.49041 7.65364 7.79583 8.37220 8.52362 8.85216 9.22633 10.70394 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.002663 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.398845 B =10511.290802 C =11212.319483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.242 3.758 10 H 0.087 0.913 11 N -0.689 5.689 12 C 0.559 3.441 13 O -0.531 6.531 14 C 0.081 3.919 15 C -0.103 4.103 16 C -0.085 4.085 17 C -0.033 4.033 18 C -0.199 4.199 19 C 0.071 3.929 20 N -0.294 5.294 21 N -0.471 5.471 22 H 0.443 0.557 23 C 0.082 3.918 24 C 0.096 3.904 25 N -0.447 5.447 26 C 0.417 3.583 27 F -0.208 7.208 28 F -0.218 7.218 29 F -0.136 7.136 30 H 0.268 0.732 31 H 0.409 0.591 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.188 0.812 35 H 0.185 0.815 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.936 -16.366 -0.269 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.097 0.903 9 C 0.137 3.863 10 H 0.104 0.896 11 N -0.337 5.337 12 C 0.343 3.657 13 O -0.407 6.407 14 C -0.057 4.057 15 C -0.123 4.123 16 C -0.111 4.111 17 C -0.037 4.037 18 C -0.212 4.212 19 C -0.116 4.116 20 N -0.115 5.115 21 N -0.178 5.178 22 H 0.287 0.713 23 C -0.067 4.067 24 C -0.065 4.065 25 N -0.158 5.158 26 C 0.361 3.639 27 F -0.190 7.190 28 F -0.200 7.200 29 F -0.117 7.117 30 H 0.079 0.921 31 H 0.245 0.755 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.205 0.795 35 H 0.202 0.798 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.693 -16.597 -0.379 20.898 hybrid contribution 0.531 0.724 0.436 0.998 sum 13.224 -15.873 0.056 20.660 Atomic orbital electron populations 1.70401 1.05857 1.27361 1.43751 1.25084 0.95158 1.00120 0.94045 0.86199 0.79635 0.81587 0.78352 1.20201 1.20823 1.19452 1.20891 0.93905 0.87986 1.55964 0.90296 1.19799 0.88781 0.85854 0.91868 0.89571 1.45948 1.17679 1.09824 1.60278 1.17895 0.86257 0.82576 0.79012 1.90789 1.20071 1.82841 1.47007 1.21374 0.91650 0.94425 0.98264 1.22060 1.01297 0.91944 0.97046 1.21466 0.92078 0.99428 0.98115 1.19198 0.93086 0.93271 0.98154 1.18793 0.94446 0.94731 1.13190 1.24050 0.97121 0.91919 0.98557 1.77254 0.99519 1.16906 1.17845 1.46233 1.14518 1.08020 1.49007 0.71303 1.22725 0.93924 0.90644 0.99452 1.22707 0.98670 0.87676 0.97491 1.67532 1.01540 1.33739 1.12947 1.23110 0.80830 0.72811 0.87141 1.92996 1.74370 1.96176 1.55459 1.93067 1.81511 1.48427 1.96980 1.93406 1.68363 1.53739 1.96205 0.92124 0.75485 0.83193 0.84285 0.79485 0.79826 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.12 9.50 55.43 0.53 -22.59 16 2 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.55 -14.26 8.46 -34.44 -0.29 -14.55 16 8 H 0.08 1.95 7.74 -52.48 -0.41 1.54 16 9 C 0.24 6.14 2.21 -69.08 -0.15 5.99 16 10 H 0.09 2.40 7.58 -51.93 -0.39 2.01 16 11 N -0.69 -14.97 4.98 -55.85 -0.28 -15.25 16 12 C 0.56 11.62 7.34 -12.29 -0.09 11.53 16 13 O -0.53 -12.42 14.88 5.33 0.08 -12.34 16 14 C 0.08 1.34 6.75 -82.99 -0.56 0.78 16 15 C -0.10 -1.39 9.61 -39.11 -0.38 -1.77 16 16 C -0.08 -0.88 9.68 -39.00 -0.38 -1.26 16 17 C -0.03 -0.34 5.90 -104.63 -0.62 -0.95 16 18 C -0.20 -1.65 6.05 -105.34 -0.64 -2.29 16 19 C 0.07 0.58 11.45 -17.04 -0.20 0.38 16 20 N -0.29 -2.62 12.66 30.82 0.39 -2.23 16 21 N -0.47 -2.87 7.32 30.65 0.22 -2.64 16 22 H 0.44 1.24 8.96 -182.68 -1.64 -0.40 16 23 C 0.08 0.49 11.40 -16.88 -0.19 0.30 16 24 C 0.10 1.06 10.73 -17.22 -0.18 0.88 16 25 N -0.45 -6.66 9.51 -9.55 -0.09 -6.75 16 26 C 0.42 10.89 2.81 37.16 0.10 10.99 16 27 F -0.21 -5.26 16.94 2.25 0.04 -5.23 16 28 F -0.22 -5.61 15.68 2.25 0.04 -5.58 16 29 F -0.14 -3.79 12.91 2.25 0.03 -3.76 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.41 8.19 7.85 -40.82 -0.32 7.87 16 32 H 0.15 1.98 7.63 -52.49 -0.40 1.58 16 33 H 0.14 0.98 7.16 -52.49 -0.38 0.61 16 34 H 0.19 1.04 7.41 -52.49 -0.39 0.65 16 35 H 0.18 0.49 7.30 -52.49 -0.38 0.10 16 36 H 0.16 1.18 7.03 -52.49 -0.37 0.81 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -33.49 329.81 -6.57 -40.06 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.81 Total: 4.52 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: -3.66 Total: 11.64 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.77 Total: -49.47 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 9 Polarization: -14.67 SS G_CDS: 0.10 Total: -14.57 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.49 -6.57 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455988593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.383 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds