Wall clock time and date at job start Sat Apr 11 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99719 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99801 * 3 2 1 5 5 H 1.48492 * 109.47321 * 30.00730 * 3 2 1 6 6 H 1.48507 * 109.46867 * 150.00156 * 3 2 1 7 7 C 1.37877 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99345 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00384 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00064 * 9 7 2 11 11 N 1.46500 * 109.46939 * 179.97438 * 9 7 2 12 12 C 1.34780 * 119.99910 * 205.00060 * 11 9 7 13 13 O 1.21544 * 119.99730 * 0.02562 * 12 11 9 14 14 C 1.47937 * 119.99920 * 180.02562 * 12 11 9 15 15 C 1.39501 * 119.59053 * 179.97438 * 14 12 11 16 16 C 1.38234 * 119.18276 * 179.97438 * 15 14 12 17 17 C 1.39785 * 118.38957 * 0.02562 * 16 15 14 18 18 C 1.48270 * 120.43756 * 180.02562 * 17 16 15 19 19 C 1.40950 * 126.24607 * 359.68609 * 18 17 16 20 20 N 1.30628 * 108.06776 * 179.85405 * 19 18 17 21 21 N 1.39995 * 108.56998 * 0.41097 * 20 19 18 22 22 H 0.97001 * 125.87240 * 179.74126 * 21 20 19 23 23 C 1.34715 * 108.25850 * 359.73337 * 21 20 19 24 24 C 1.39738 * 119.12277 * 0.02562 * 17 16 15 25 25 N 1.31306 * 120.73090 * 359.72059 * 24 17 16 26 26 C 1.52997 * 109.47078 * 300.00152 * 9 7 2 27 27 F 1.39905 * 109.47157 * 299.99776 * 26 9 7 28 28 F 1.39900 * 109.47010 * 180.02562 * 26 9 7 29 29 F 1.39897 * 109.47422 * 59.99858 * 26 9 7 30 30 H 0.97006 * 120.00331 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99975 * 25.00437 * 11 9 7 32 32 H 1.07998 * 120.41122 * 359.97438 * 15 14 12 33 33 H 1.07997 * 120.80292 * 179.97438 * 16 15 14 34 34 H 1.07999 * 125.96697 * 359.97438 * 19 18 17 35 35 H 1.08002 * 126.20136 * 180.02562 * 23 21 20 36 36 H 1.07999 * 119.63412 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0018 12 6 1.8365 -4.8121 -0.4953 13 8 0.7163 -4.9697 -0.9398 14 6 2.7977 -5.9367 -0.4961 15 6 2.4092 -7.1746 -1.0085 16 6 3.3143 -8.2194 -1.0055 17 6 4.5912 -7.9911 -0.4847 18 6 5.5978 -9.0795 -0.4596 19 6 5.4107 -10.3985 -0.9199 20 7 6.5242 -11.0550 -0.7317 21 7 7.4556 -10.1930 -0.1407 22 1 8.3638 -10.4234 0.1104 23 6 6.8739 -8.9885 0.0191 24 6 4.9065 -6.7236 0.0120 25 7 4.0212 -5.7542 -0.0124 26 6 0.3718 -2.5805 1.2490 27 9 1.1766 -2.5067 2.3910 28 9 -0.3272 -3.7923 1.2493 29 9 -0.5373 -1.5172 1.2496 30 1 -0.4851 0.8401 0.0004 31 1 3.0970 -3.4867 0.3526 32 1 1.4136 -7.3150 -1.4027 33 1 3.0411 -9.1888 -1.3954 34 1 4.5054 -10.7963 -1.3542 35 1 7.3333 -8.1101 0.4477 36 1 5.8907 -6.5380 0.4159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455988593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:55 Heat of formation + Delta-G solvation = -84.457916 kcal Electronic energy + Delta-G solvation = -28750.045566 eV Core-core repulsion = 24013.666584 eV Total energy + Delta-G solvation = -4736.378982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.43209 -48.06721 -47.73727 -42.26139 -41.35207 -39.82734 -36.55472 -34.71468 -34.17585 -32.97049 -32.35201 -30.77263 -29.41287 -26.62556 -25.60463 -24.89602 -23.47004 -22.53927 -21.84110 -21.22106 -19.84703 -19.16113 -18.87535 -18.74242 -18.57420 -17.71959 -17.23438 -16.74251 -16.23767 -16.13428 -16.02029 -15.67607 -15.56312 -15.20282 -14.98621 -14.85851 -14.55661 -14.47551 -14.37366 -14.30569 -14.16014 -14.03585 -13.88652 -13.72062 -13.08858 -12.96809 -12.76989 -12.60726 -12.22227 -11.86950 -11.59831 -11.35371 -11.28097 -10.70183 -10.68027 -10.57608 -10.46703 -10.09235 -8.94232 -8.21165 -6.52159 -0.49909 0.34480 0.96020 1.47256 1.47734 1.51808 1.60497 1.99408 2.07223 2.14837 2.39869 2.52193 2.93101 3.03406 3.18348 3.56133 3.73255 3.79930 3.83935 3.90436 3.97305 4.10623 4.19653 4.28660 4.32197 4.59255 4.79500 4.86033 4.87834 5.12334 5.25609 5.38240 5.50032 5.53746 5.64099 5.67176 6.36557 6.52063 6.56745 6.63925 6.91520 7.15080 7.27582 8.71903 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.002663 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.398845 B =10511.290802 C =11212.319483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.015 3.985 3 Si 0.985 3.015 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.563 4.563 8 H 0.090 0.910 9 C 0.250 3.750 10 H 0.051 0.949 11 N -0.688 5.688 12 C 0.555 3.445 13 O -0.570 6.570 14 C 0.041 3.959 15 C -0.103 4.103 16 C -0.084 4.084 17 C -0.006 4.006 18 C -0.230 4.230 19 C 0.070 3.930 20 N -0.329 5.329 21 N -0.463 5.463 22 H 0.457 0.543 23 C 0.107 3.893 24 C 0.091 3.909 25 N -0.466 5.466 26 C 0.415 3.585 27 F -0.203 7.203 28 F -0.219 7.219 29 F -0.148 7.148 30 H 0.270 0.730 31 H 0.417 0.583 32 H 0.144 0.856 33 H 0.174 0.826 34 H 0.205 0.795 35 H 0.223 0.777 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.296 -17.520 0.122 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.599 4.599 8 H 0.108 0.892 9 C 0.143 3.857 10 H 0.069 0.931 11 N -0.338 5.338 12 C 0.342 3.658 13 O -0.449 6.449 14 C -0.095 4.095 15 C -0.124 4.124 16 C -0.109 4.109 17 C -0.009 4.009 18 C -0.242 4.242 19 C -0.117 4.117 20 N -0.150 5.150 21 N -0.170 5.170 22 H 0.304 0.696 23 C -0.044 4.044 24 C -0.071 4.071 25 N -0.177 5.177 26 C 0.358 3.642 27 F -0.185 7.185 28 F -0.201 7.201 29 F -0.129 7.129 30 H 0.079 0.921 31 H 0.254 0.746 32 H 0.162 0.838 33 H 0.191 0.809 34 H 0.222 0.778 35 H 0.239 0.761 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 16.091 -17.795 0.013 23.991 hybrid contribution -0.348 0.863 0.334 0.989 sum 15.743 -16.932 0.347 23.123 Atomic orbital electron populations 1.70526 1.07465 1.28250 1.44556 1.26013 0.95945 1.03690 0.93336 0.85134 0.78521 0.76893 0.78647 1.19417 1.20799 1.18273 1.21206 0.94480 0.88316 1.55936 0.89230 1.19411 0.88932 0.87388 0.90012 0.93137 1.45818 1.17350 1.09576 1.61041 1.18606 0.86683 0.83082 0.77454 1.90741 1.22043 1.83566 1.48517 1.20744 0.92183 0.93734 1.02840 1.22081 1.01799 0.91798 0.96735 1.21801 0.91640 0.99809 0.97672 1.19381 0.93028 0.93274 0.95242 1.18764 0.95188 0.94384 1.15894 1.24422 0.97592 0.91871 0.97847 1.77239 1.00303 1.18183 1.19269 1.46332 1.14962 1.07779 1.47906 0.69613 1.23329 0.92998 0.91325 0.96703 1.23349 0.99324 0.87322 0.97084 1.67413 1.01312 1.35512 1.13427 1.23255 0.80789 0.72434 0.87679 1.92988 1.74160 1.96151 1.55195 1.93057 1.81595 1.48411 1.97017 1.93379 1.68868 1.54373 1.96308 0.92056 0.74567 0.83824 0.80873 0.77807 0.76077 0.78741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.20 9.50 21.45 0.20 -49.00 16 2 C 0.02 0.82 5.20 84.65 0.44 1.26 16 3 Si 0.98 41.23 29.54 68.60 2.03 43.25 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.56 -29.57 8.46 25.60 0.22 -29.36 16 8 H 0.09 4.40 7.74 -2.91 -0.02 4.38 16 9 C 0.25 13.15 2.21 44.24 0.10 13.25 16 10 H 0.05 3.01 7.58 -2.39 -0.02 2.99 16 11 N -0.69 -31.02 4.98 -448.89 -2.23 -33.25 16 12 C 0.55 24.15 7.34 86.81 0.64 24.78 16 13 O -0.57 -28.29 14.88 -3.85 -0.06 -28.35 16 14 C 0.04 1.38 6.75 41.87 0.28 1.66 16 15 C -0.10 -2.79 9.61 22.57 0.22 -2.57 16 16 C -0.08 -1.55 9.68 22.64 0.22 -1.33 16 17 C -0.01 -0.09 5.90 -19.87 -0.12 -0.21 16 18 C -0.23 -2.93 6.05 -20.33 -0.12 -3.05 16 19 C 0.07 0.92 11.45 85.54 0.98 1.90 16 20 N -0.33 -4.90 12.66 -56.41 -0.71 -5.61 16 21 N -0.46 -3.88 7.32 -56.95 -0.42 -4.30 16 22 H 0.46 0.88 8.96 -213.39 -1.91 -1.04 16 23 C 0.11 0.79 11.40 83.86 0.96 1.75 16 24 C 0.09 1.76 10.73 85.13 0.91 2.68 16 25 N -0.47 -13.44 9.51 -184.12 -1.75 -15.19 16 26 C 0.41 22.36 2.81 71.98 0.20 22.56 16 27 F -0.20 -10.43 16.94 44.97 0.76 -9.67 16 28 F -0.22 -11.72 15.68 44.97 0.70 -11.02 16 29 F -0.15 -8.54 12.91 44.97 0.58 -7.96 16 30 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 31 H 0.42 17.06 7.85 -92.71 -0.73 16.33 16 32 H 0.14 3.94 7.63 -2.91 -0.02 3.92 16 33 H 0.17 1.91 7.16 -2.91 -0.02 1.89 16 34 H 0.21 1.64 7.41 -2.91 -0.02 1.62 16 35 H 0.22 -0.19 7.30 -2.91 -0.02 -0.21 16 36 H 0.20 2.02 7.03 -2.91 -0.02 2.00 16 Total: -1.00 -75.73 329.81 2.59 -73.15 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -1.44 Total: 14.64 kcal Atomic # 6 Polarization: 28.39 SS G_CDS: 4.92 Total: 33.31 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -4.91 Total: -107.35 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.35 kcal Atomic # 9 Polarization: -30.70 SS G_CDS: 2.05 Total: -28.65 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -75.73 2.59 -73.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455988593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.311 kcal (2) G-P(sol) polarization free energy of solvation -75.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds