Wall clock time and date at job start Sat Apr 11 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 S 1.81403 * 109.46815 * 90.02831 * 7 6 5 9 9 O 1.42098 * 110.54201 * 291.62523 * 8 7 6 10 10 O 1.42101 * 110.54200 * 68.37752 * 8 7 6 11 11 N 1.65599 * 104.45088 * 180.02562 * 8 7 6 12 12 C 1.46494 * 120.00088 * 89.99823 * 11 8 7 13 13 C 1.50696 * 109.47049 * 95.00404 * 12 11 8 14 14 H 1.07999 * 119.99939 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00454 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99945 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47059 * 90.00093 * 17 15 13 19 19 H 1.48500 * 109.47212 * 209.99732 * 17 15 13 20 20 H 1.48500 * 109.47052 * 330.00299 * 17 15 13 21 21 C 1.46504 * 120.00049 * 270.00446 * 11 8 7 22 22 C 1.50696 * 109.47428 * 94.99499 * 21 11 8 23 23 C 1.34514 * 125.78917 * 90.00103 * 22 21 11 24 24 C 1.41381 * 106.84281 * 180.02562 * 23 22 21 25 25 C 1.34519 * 106.84185 * 359.97438 * 24 23 22 26 26 O 1.34301 * 125.78957 * 269.69395 * 22 21 11 27 27 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 28 28 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 29 29 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 30 30 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 31 31 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 32 32 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 33 33 H 1.09002 * 109.47425 * 215.00243 * 12 11 8 34 34 H 1.09003 * 109.47116 * 335.00405 * 12 11 8 35 35 H 0.96997 * 120.00592 * 179.97438 * 16 15 13 36 36 H 1.08999 * 109.47268 * 215.00129 * 21 11 8 37 37 H 1.09003 * 109.47002 * 334.99168 * 21 11 8 38 38 H 1.07997 * 126.57757 * 359.96596 * 23 22 21 39 39 H 1.07998 * 126.58080 * 179.97438 * 24 23 22 40 40 H 1.07991 * 125.79208 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 16 1.8281 -3.1587 1.7041 9 8 3.1008 -3.1996 2.3347 10 8 0.7133 -2.5514 2.3425 11 7 1.3962 -4.7503 1.5538 12 6 2.4297 -5.7862 1.4834 13 6 2.6668 -6.3535 2.8592 14 1 2.1042 -5.9794 3.7018 15 6 3.6026 -7.3493 3.0425 16 7 3.8099 -7.8440 4.2432 17 14 4.5762 -7.9957 1.5851 18 1 5.8195 -7.1989 1.4277 19 1 4.9270 -9.4200 1.8168 20 1 3.7560 -7.8821 0.3523 21 6 -0.0194 -5.1224 1.4910 22 6 -0.4435 -5.2441 0.0501 23 6 -0.3878 -6.3629 -0.6945 24 6 -0.8801 -6.0267 -1.9765 25 6 -1.2078 -4.7226 -1.9385 26 8 -0.9465 -4.2552 -0.7067 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 2.0576 2.1094 0.0004 31 1 1.0275 -2.6837 -0.5163 32 1 2.7453 -3.1500 -0.5220 33 1 2.1019 -6.5816 0.8140 34 1 3.3549 -5.3513 1.1053 35 1 4.4680 -8.5448 4.3721 36 1 -0.1667 -6.0776 1.9950 37 1 -0.6186 -4.3561 1.9827 38 1 -0.0339 -7.3319 -0.3748 39 1 -0.9750 -6.6897 -2.8238 40 1 -1.6161 -4.1499 -2.7579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462740297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:10 Heat of formation + Delta-G solvation = 19.677574 kcal Electronic energy + Delta-G solvation = -28433.475654 eV Core-core repulsion = 24346.620266 eV Total energy + Delta-G solvation = -4086.855388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.15907 -42.47127 -36.74456 -36.24148 -35.66771 -35.41967 -32.91794 -32.75524 -32.54447 -30.38604 -29.34662 -28.18592 -27.81290 -25.15346 -22.26241 -21.90635 -21.66601 -21.56382 -20.45196 -18.57555 -17.92801 -17.75515 -17.37700 -17.11056 -16.80501 -16.17037 -15.87612 -15.62756 -15.03382 -14.61815 -14.25718 -14.05552 -13.86485 -13.42043 -13.22889 -13.03838 -12.84818 -12.76803 -12.69703 -12.51588 -12.39923 -12.13565 -11.86048 -11.66211 -11.53313 -11.41791 -11.30576 -11.26236 -10.72980 -10.56381 -10.36743 -9.86314 -9.80322 -9.58060 -9.54734 -8.62052 -8.48497 -8.35618 -6.10654 -4.10518 0.42842 1.34697 1.74334 2.03210 2.65308 3.00267 3.05386 3.18961 3.26266 3.30558 3.34613 3.76689 4.10361 4.27199 4.35927 4.52485 4.69300 4.78858 4.90122 5.03243 5.07672 5.11549 5.19633 5.28227 5.36777 5.43892 5.45999 5.61524 5.63405 5.83443 5.88254 5.98533 6.02683 6.09328 6.21966 6.57182 6.61868 6.88367 7.12757 7.22498 7.51680 8.07500 8.44673 8.94368 9.47680 11.02617 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.005320 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.249032 B = 5261.408720 C = 6916.226010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.187 4.187 3 C -0.067 4.067 4 O 0.115 5.885 5 N -0.342 5.342 6 C 0.017 3.983 7 C -0.565 4.565 8 S 2.608 3.392 9 O -0.917 6.917 10 O -0.954 6.954 11 N -0.969 5.969 12 C 0.222 3.778 13 C -0.530 4.530 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.892 5.892 17 Si 0.866 3.134 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.264 1.264 21 C 0.197 3.803 22 C -0.034 4.034 23 C -0.190 4.190 24 C -0.213 4.213 25 C -0.051 4.051 26 O -0.181 6.181 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.222 0.778 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.039 0.961 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.747 12.951 -14.373 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.192 4.192 3 C -0.148 4.148 4 O 0.043 5.957 5 N -0.042 5.042 6 C -0.142 4.142 7 C -0.689 4.689 8 S 2.696 3.304 9 O -0.907 6.907 10 O -0.944 6.944 11 N -0.806 5.806 12 C 0.099 3.901 13 C -0.569 4.569 14 H 0.099 0.901 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.692 3.308 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.189 1.189 21 C 0.070 3.930 22 C -0.086 4.086 23 C -0.210 4.210 24 C -0.232 4.232 25 C -0.119 4.119 26 O -0.077 6.077 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.238 0.762 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.122 0.878 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -9.297 12.980 -13.379 20.831 hybrid contribution -0.175 -0.708 -1.862 2.000 sum -9.472 12.271 -15.241 21.739 Atomic orbital electron populations 1.20233 0.86771 1.03273 1.03959 1.21396 0.99149 0.91140 1.07465 1.25813 0.82932 1.01213 1.04848 1.84846 1.29151 1.15173 1.66484 1.73960 1.21598 0.91413 1.17260 1.22289 0.89403 0.95718 1.06819 1.29390 1.11306 0.97202 1.31010 1.05421 0.74979 0.73709 0.76334 1.93672 1.42103 1.84866 1.70053 1.93525 1.53127 1.76685 1.71047 1.57462 1.11732 1.23575 1.87786 1.19588 0.84822 0.86492 0.99170 1.21289 1.22761 1.19848 0.93044 0.90060 1.24822 0.96205 0.96062 0.95566 1.69877 1.34332 1.27641 1.21153 0.87016 0.81527 0.78745 0.83474 1.19713 1.20828 1.18865 1.19764 0.81573 1.05882 0.85732 1.23507 1.02168 0.86849 0.96056 1.21756 1.05485 1.00116 0.93623 1.21863 1.06092 0.96209 0.99033 1.23977 1.06009 0.95470 0.86407 1.84012 1.63714 1.38762 1.21215 0.89491 0.90704 0.90700 0.76207 0.83446 0.83650 0.94310 0.95106 0.92441 0.85560 0.87759 0.83022 0.83689 0.78451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 10.37 36.01 0.37 -0.44 16 2 C -0.19 -2.29 6.32 -104.42 -0.66 -2.95 16 3 C -0.07 -0.67 12.26 29.74 0.36 -0.30 16 4 O 0.11 1.53 11.20 17.17 0.19 1.72 16 5 N -0.34 -5.67 12.07 33.42 0.40 -5.27 16 6 C 0.02 0.27 6.59 -82.10 -0.54 -0.27 16 7 C -0.56 -8.77 6.68 36.01 0.24 -8.53 16 8 S 2.61 51.28 5.35 -107.50 -0.58 50.71 16 9 O -0.92 -22.36 16.98 -57.54 -0.98 -23.34 16 10 O -0.95 -18.88 16.53 -57.54 -0.95 -19.83 16 11 N -0.97 -18.95 2.68 -116.95 -0.31 -19.27 16 12 C 0.22 5.06 4.08 -5.20 -0.02 5.03 16 13 C -0.53 -14.69 9.94 -34.44 -0.34 -15.03 16 14 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 17 Si 0.87 20.79 27.47 -169.99 -4.67 16.12 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 21 C 0.20 3.20 6.18 -5.19 -0.03 3.17 16 22 C -0.03 -0.50 6.90 -35.63 -0.25 -0.74 16 23 C -0.19 -2.64 10.81 -39.70 -0.43 -3.07 16 24 C -0.21 -2.48 10.91 -39.70 -0.43 -2.91 16 25 C -0.05 -0.54 12.09 29.42 0.36 -0.19 16 26 O -0.18 -2.38 9.86 5.69 0.06 -2.32 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.70 7.65 -51.93 -0.40 0.30 16 30 H 0.22 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.15 1.91 6.85 -51.92 -0.36 1.56 16 32 H 0.15 2.15 8.14 -51.93 -0.42 1.73 16 33 H 0.04 0.82 7.17 -51.93 -0.37 0.45 16 34 H 0.03 0.71 7.03 -51.93 -0.37 0.35 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.13 2.00 8.11 -51.93 -0.42 1.58 16 37 H 0.10 1.58 6.82 -51.93 -0.35 1.23 16 38 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.20 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -36.55 362.12 -6.89 -43.43 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.81 Total: 3.01 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -1.47 Total: -24.16 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.86 Total: -50.80 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.68 Total: -43.77 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Atomic # 16 Polarization: 51.28 SS G_CDS: -0.58 Total: 50.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.55 -6.89 -43.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462740297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.110 kcal (2) G-P(sol) polarization free energy of solvation -36.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds