Wall clock time and date at job start Sat Apr 11 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00460 * 2 1 4 4 H 1.48499 * 109.47616 * 240.00826 * 3 2 1 5 5 H 1.48504 * 109.46952 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47228 * 120.00525 * 3 2 1 7 7 C 1.37881 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99660 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46940 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46691 * 179.97438 * 11 10 9 13 13 S 1.65600 * 119.99623 * 164.99540 * 12 11 10 14 14 O 1.42097 * 106.40596 * 311.46199 * 13 12 11 15 15 O 1.42108 * 106.40260 * 178.54227 * 13 12 11 16 16 C 1.76207 * 107.21784 * 65.00377 * 13 12 11 17 17 C 1.38280 * 119.86911 * 89.99893 * 16 13 12 18 18 C 1.38285 * 120.19583 * 180.25299 * 17 16 13 19 19 C 1.38507 * 119.81594 * 359.44659 * 18 17 16 20 20 C 1.39396 * 119.98591 * 0.56356 * 19 18 17 21 21 C 1.38306 * 119.86993 * 269.97592 * 16 13 12 22 22 O 1.35982 * 119.47037 * 179.68038 * 20 19 18 23 23 C 1.42997 * 116.71288 * 327.23536 * 22 20 19 24 24 C 1.50756 * 109.64378 * 46.37606 * 23 22 20 25 25 O 1.21288 * 120.13588 * 148.68860 * 24 23 22 26 26 N 1.35083 * 119.72536 * 328.67038 * 24 23 22 27 27 H 0.97003 * 120.00112 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47164 * 60.00749 * 9 7 2 29 29 H 1.08999 * 109.47230 * 300.00209 * 9 7 2 30 30 H 1.08997 * 109.46889 * 60.00212 * 10 9 7 31 31 H 1.09004 * 109.46619 * 300.00161 * 10 9 7 32 32 H 1.08999 * 109.46934 * 60.00169 * 11 10 9 33 33 H 1.08999 * 109.46937 * 299.99670 * 11 10 9 34 34 H 0.96999 * 120.00859 * 345.00061 * 12 11 10 35 35 H 1.08002 * 119.89945 * 359.97209 * 17 16 13 36 36 H 1.08000 * 120.08948 * 179.71633 * 18 17 16 37 37 H 1.08001 * 120.06401 * 359.97438 * 21 16 13 38 38 H 1.09006 * 109.44264 * 166.43031 * 23 22 20 39 39 H 1.09003 * 109.44274 * 286.35336 * 23 22 20 40 40 H 0.97009 * 120.50313 * 181.72268 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 16 1.9171 -7.6304 0.3687 14 8 1.1542 -7.5189 1.5623 15 8 3.0527 -8.4762 0.2483 16 6 0.7934 -8.1231 -0.8959 17 6 1.2650 -8.7749 -2.0205 18 6 0.3898 -9.1600 -3.0195 19 6 -0.9643 -8.9013 -2.8862 20 6 -1.4397 -8.2440 -1.7526 21 6 -0.5569 -7.8568 -0.7595 22 8 -2.7704 -7.9896 -1.6355 23 6 -3.4840 -7.7290 -2.8470 24 6 -3.1103 -8.7552 -3.8861 25 8 -3.9200 -9.0992 -4.7210 26 7 -1.8697 -9.2898 -3.8838 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6245 -2.5571 0.8896 30 1 2.8717 -3.6045 0.8895 31 1 2.8718 -3.6044 -0.8906 32 1 0.8537 -5.0446 -0.8914 33 1 0.8531 -5.0451 0.8886 34 1 3.3640 -5.9421 -0.2191 35 1 2.3207 -8.9799 -2.1210 36 1 0.7606 -9.6649 -3.8993 37 1 -0.9219 -7.3482 0.1205 38 1 -4.5558 -7.7806 -2.6550 39 1 -3.2284 -6.7341 -3.2118 40 1 -1.6092 -9.9324 -4.5621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463057904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:16 Heat of formation + Delta-G solvation = -151.995778 kcal Electronic energy + Delta-G solvation = -26719.936979 eV Core-core repulsion = 22625.637276 eV Total energy + Delta-G solvation = -4094.299703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.65357 -40.15432 -38.72144 -38.35713 -37.33076 -36.96152 -36.47915 -35.12557 -32.59060 -31.95129 -31.27969 -28.98056 -28.15956 -25.13102 -24.73440 -24.43967 -22.22707 -21.46058 -20.65275 -19.98211 -19.19236 -18.61966 -18.51511 -18.24540 -17.69990 -17.38164 -16.88083 -16.50833 -16.43870 -16.05406 -15.81743 -15.76925 -15.38742 -15.12357 -14.88000 -14.37809 -14.25190 -14.01053 -13.80416 -13.71594 -13.25106 -13.18620 -13.14679 -12.91238 -12.74387 -12.55555 -12.48683 -12.31698 -12.28879 -12.04764 -11.62172 -11.39782 -11.34195 -11.11656 -10.49362 -10.40308 -10.01701 -9.40602 -8.15235 -6.24944 -0.73712 -0.50469 0.01912 0.93450 1.44380 1.46237 1.48502 1.53889 1.95092 2.05262 2.34453 2.45347 2.71526 2.76378 3.18816 3.31605 3.37110 3.81653 3.92213 4.01733 4.08542 4.10529 4.20781 4.33786 4.51678 4.55505 4.66383 4.73290 4.75908 4.89527 5.04971 5.23450 5.25660 5.27753 5.29472 5.51157 5.59383 5.82090 5.92098 6.02268 6.14125 6.30497 6.50167 6.92399 7.43924 8.96033 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.003003 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.839098 B = 9321.305140 C =11303.185853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.105 4.105 11 C 0.120 3.880 12 N -1.105 6.105 13 S 2.718 3.282 14 O -0.987 6.987 15 O -0.975 6.975 16 C -0.672 4.672 17 C -0.007 4.007 18 C -0.133 4.133 19 C 0.146 3.854 20 C 0.042 3.958 21 C -0.021 4.021 22 O -0.309 6.309 23 C 0.044 3.956 24 C 0.494 3.506 25 O -0.536 6.536 26 N -0.652 5.652 27 H 0.262 0.738 28 H 0.001 0.999 29 H -0.005 1.005 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.428 0.572 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.154 0.846 38 H 0.170 0.830 39 H 0.122 0.878 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 -20.788 -8.239 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.017 4.017 10 C -0.144 4.144 11 C -0.006 4.006 12 N -0.867 5.867 13 S 2.808 3.192 14 O -0.977 6.977 15 O -0.965 6.965 16 C -0.761 4.761 17 C -0.026 4.026 18 C -0.154 4.154 19 C 0.049 3.951 20 C -0.005 4.005 21 C -0.042 4.042 22 O -0.223 6.223 23 C -0.034 4.034 24 C 0.283 3.717 25 O -0.412 6.412 26 N -0.299 5.299 27 H 0.071 0.929 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.265 0.735 35 H 0.191 0.809 36 H 0.198 0.802 37 H 0.172 0.828 38 H 0.187 0.813 39 H 0.139 0.861 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -0.729 -21.276 -7.686 22.634 hybrid contribution 0.050 0.919 -1.096 1.431 sum -0.680 -20.357 -8.781 22.181 Atomic orbital electron populations 1.70072 1.07643 1.27684 1.51761 1.25914 0.95718 1.03125 0.94983 0.85581 0.78303 0.78542 0.79092 1.19153 1.21199 1.19452 1.21693 0.93657 0.92384 1.50287 0.92021 1.18992 0.94525 0.92627 0.95522 1.21623 0.98523 0.92284 1.01976 1.21363 0.91273 0.85782 1.02170 1.55242 1.19772 1.23281 1.88378 1.00967 0.72765 0.71981 0.73446 1.93565 1.73151 1.86346 1.44596 1.93562 1.49990 1.65681 1.87253 1.30694 1.09084 1.17266 1.19081 1.21114 1.01916 0.90393 0.89217 1.21131 0.88919 1.03491 1.01890 1.18434 0.91517 0.96777 0.88384 1.18684 0.84196 1.02039 0.95615 1.20346 0.90071 0.95119 0.98628 1.86298 1.17073 1.87242 1.31726 1.23535 1.00641 0.97897 0.81303 1.21927 0.81124 0.82757 0.85927 1.90823 1.49262 1.61000 1.40142 1.43816 1.12029 1.44331 1.29752 0.92891 0.98054 0.98624 0.92243 0.91279 0.90724 0.91053 0.73495 0.80925 0.80168 0.82849 0.81259 0.86084 0.72843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.03 4.97 29.85 0.15 1.18 16 10 C -0.10 -3.72 5.30 30.60 0.16 -3.56 16 11 C 0.12 3.39 6.22 86.38 0.54 3.93 16 12 N -1.10 -24.62 6.00 -187.49 -1.12 -25.75 16 13 S 2.72 62.73 5.73 -56.49 -0.32 62.40 16 14 O -0.99 -29.83 16.74 -128.00 -2.14 -31.97 16 15 O -0.97 -24.64 17.27 -128.00 -2.21 -26.85 16 16 C -0.67 -13.14 5.95 22.30 0.13 -13.01 16 17 C -0.01 -0.09 9.51 22.29 0.21 0.12 16 18 C -0.13 -1.55 9.95 22.35 0.22 -1.32 16 19 C 0.15 2.28 6.54 38.14 0.25 2.53 16 20 C 0.04 0.84 6.44 22.59 0.15 0.98 16 21 C -0.02 -0.45 9.47 22.32 0.21 -0.24 16 22 O -0.31 -6.10 10.45 -93.35 -0.98 -7.08 16 23 C 0.04 0.64 7.17 71.25 0.51 1.15 16 24 C 0.49 8.70 7.94 87.63 0.70 9.39 16 25 O -0.54 -12.67 17.95 -3.05 -0.05 -12.73 16 26 N -0.65 -9.03 5.47 -302.71 -1.66 -10.68 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.85 16 28 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16 29 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 2.14 7.75 -2.39 -0.02 2.12 16 34 H 0.43 7.81 8.65 -96.75 -0.84 6.97 16 35 H 0.17 1.73 7.60 -2.91 -0.02 1.71 16 36 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.15 3.35 7.61 -2.91 -0.02 3.33 16 38 H 0.17 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.43 3.89 8.89 -92.70 -0.82 3.07 16 Total: -1.00 -76.41 359.41 -2.81 -79.22 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -0.56 Total: 10.48 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 3.92 Total: -27.40 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -2.50 Total: -90.96 kcal Atomic # 8 Polarization: -73.24 SS G_CDS: -5.38 Total: -78.63 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 62.73 SS G_CDS: -0.32 Total: 62.40 kcal Total: -76.41 -2.81 -79.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463057904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.775 kcal (2) G-P(sol) polarization free energy of solvation -76.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds