Wall clock time and date at job start Sat Apr 11 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99841 * 2 1 4 4 H 1.48500 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47166 * 299.99990 * 3 2 1 6 6 H 1.48500 * 109.46952 * 60.00385 * 3 2 1 7 7 C 1.38802 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99818 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47000 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99955 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00169 * 179.97438 * 11 10 9 14 14 C 1.47471 * 125.62717 * 0.02852 * 13 11 10 15 15 C 1.54906 * 104.81210 * 204.04395 * 14 13 11 16 16 C 1.55156 * 101.61451 * 323.04512 * 15 14 13 17 17 H 1.09005 * 110.72052 * 277.11432 * 16 15 14 18 18 N 1.46500 * 110.71754 * 154.02296 * 16 15 14 19 19 C 1.34781 * 120.00046 * 154.99616 * 18 16 15 20 20 O 1.21287 * 119.99721 * 359.97438 * 19 18 16 21 21 C 1.50692 * 120.00219 * 179.97438 * 19 18 16 22 22 C 1.53000 * 109.47499 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47014 * 59.99777 * 22 21 19 24 24 F 1.39894 * 109.47627 * 180.02562 * 22 21 19 25 25 F 1.39908 * 109.46818 * 300.00164 * 22 21 19 26 26 C 1.47017 * 125.65312 * 179.97438 * 13 11 10 27 27 H 0.96999 * 120.00314 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47244 * 59.99951 * 10 9 7 29 29 H 1.09000 * 109.47048 * 299.99434 * 10 9 7 30 30 H 1.09008 * 110.34870 * 85.22524 * 14 13 11 31 31 H 1.09001 * 110.40581 * 322.89560 * 14 13 11 32 32 H 1.09002 * 111.00655 * 204.94912 * 15 14 13 33 33 H 1.09002 * 111.00329 * 81.13838 * 15 14 13 34 34 H 0.96999 * 120.00052 * 334.99589 * 18 16 15 35 35 H 1.09004 * 109.47326 * 299.99995 * 21 19 18 36 36 H 1.09004 * 109.47431 * 59.99998 * 21 19 18 37 37 H 1.08998 * 109.88206 * 59.58080 * 26 13 11 38 38 H 1.09004 * 110.01118 * 298.49173 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 4.3157 -6.2442 0.0003 15 6 4.8023 -7.5822 -0.6102 16 6 3.7731 -8.5851 -0.0251 17 1 4.0591 -8.8875 0.9823 18 7 3.6367 -9.7550 -0.8963 19 6 3.2226 -10.9313 -0.3850 20 8 2.9633 -11.0214 0.7964 21 6 3.0817 -12.1346 -1.2811 22 6 2.5995 -13.3304 -0.4574 23 9 1.3605 -13.0305 0.1188 24 9 2.4692 -14.4476 -1.2892 25 9 3.5285 -13.6066 0.5516 26 6 2.4668 -7.7640 0.0018 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7312 0.8905 29 1 3.1245 -3.7313 -0.8895 30 1 4.6885 -6.1341 1.0187 31 1 4.6400 -5.4057 -0.6160 32 1 5.8124 -7.8195 -0.2764 33 1 4.7485 -7.5574 -1.6986 34 1 3.8444 -9.6831 -1.8410 35 1 2.3575 -11.9196 -2.0670 36 1 4.0469 -12.3681 -1.7305 37 1 1.8692 -7.9894 -0.8813 38 1 1.8998 -7.9986 0.9027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493818896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:36 Heat of formation + Delta-G solvation = -221.770664 kcal Electronic energy + Delta-G solvation = -26518.605106 eV Core-core repulsion = 21879.422997 eV Total energy + Delta-G solvation = -4639.182109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.45158 -47.99668 -47.86081 -40.66299 -39.49051 -37.39833 -34.68830 -32.60641 -32.45553 -30.90116 -29.79385 -27.96772 -25.53290 -24.76366 -23.50439 -21.69930 -21.19352 -19.46305 -19.16139 -18.92572 -18.11652 -17.72874 -17.30541 -16.91608 -16.52799 -15.92188 -15.54927 -15.12052 -14.84328 -14.82947 -14.67513 -14.31829 -14.27058 -14.12061 -14.04140 -14.00872 -13.91026 -13.65024 -13.24055 -12.91645 -12.63138 -12.59889 -12.45939 -12.23358 -12.02360 -11.85315 -11.25411 -11.09221 -11.04431 -10.78801 -10.61833 -9.85548 -9.76628 -9.43918 -9.10049 -8.60985 -8.26039 -6.53518 -6.24260 -3.95289 1.89924 1.99461 2.48923 2.88667 3.00626 3.19594 3.23375 3.24867 3.29031 3.54212 3.56652 3.64474 4.00480 4.16447 4.20959 4.22986 4.46108 4.49577 4.59631 4.84058 4.99205 5.00304 5.10966 5.33010 5.37394 5.46995 5.56105 5.60338 5.72408 5.86216 5.91964 6.08320 6.30857 6.76671 7.50184 7.55488 7.57671 8.32651 8.49025 9.21017 10.83212 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.035802 B = 0.001849 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.894904 B =15139.573795 C =15608.633924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.512 6.512 13 N -0.626 5.626 14 C 0.102 3.898 15 C -0.138 4.138 16 C 0.134 3.866 17 H 0.111 0.889 18 N -0.713 5.713 19 C 0.519 3.481 20 O -0.513 6.513 21 C -0.197 4.197 22 C 0.472 3.528 23 F -0.171 7.171 24 F -0.183 7.183 25 F -0.173 7.173 26 C 0.099 3.901 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.406 0.594 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.070 0.930 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.750 -25.637 -5.735 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.386 6.386 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.177 4.177 16 C 0.028 3.972 17 H 0.129 0.871 18 N -0.366 5.366 19 C 0.303 3.697 20 O -0.387 6.387 21 C -0.238 4.238 22 C 0.417 3.583 23 F -0.152 7.152 24 F -0.164 7.164 25 F -0.155 7.155 26 C -0.026 4.026 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.241 0.759 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.528 -25.846 -4.837 28.711 hybrid contribution 2.011 1.116 -0.467 2.347 sum 13.539 -24.730 -5.304 28.688 Atomic orbital electron populations 1.70025 1.05961 1.27393 1.46833 1.25005 0.95039 0.99068 0.94531 0.86106 0.79553 0.81844 0.77921 1.19611 1.20568 1.20542 1.22890 0.94913 0.91541 1.58952 0.90849 1.85448 1.04883 0.96393 1.96711 1.23506 1.06540 0.94787 1.04832 1.20078 0.85671 0.85404 0.75170 1.90723 1.14971 1.85062 1.47802 1.48452 1.06590 1.05282 1.76175 1.22287 0.80532 0.97814 1.01522 1.23095 0.99042 0.93954 1.01563 1.22058 0.94966 0.84271 0.95862 0.87067 1.45762 1.68728 1.09151 1.12917 1.19819 0.77503 0.83939 0.88458 1.90875 1.47786 1.84216 1.15804 1.22972 1.08201 0.92177 1.00402 1.19678 0.76179 0.83563 0.78842 1.93251 1.43460 1.92968 1.85557 1.93208 1.95902 1.55580 1.71708 1.93233 1.65515 1.94410 1.62320 1.22201 0.96393 0.80874 1.03107 0.92198 0.89182 0.89249 0.90778 0.89583 0.88894 0.89742 0.75856 0.84086 0.84189 0.91188 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -2.91 5.16 36.01 0.19 -2.73 16 11 C 0.55 10.39 7.87 -10.98 -0.09 10.30 16 12 O -0.51 -11.92 16.19 5.56 0.09 -11.83 16 13 N -0.63 -8.52 3.33 -170.49 -0.57 -9.09 16 14 C 0.10 0.91 6.69 -2.50 -0.02 0.90 16 15 C -0.14 -0.77 6.71 -24.58 -0.16 -0.94 16 16 C 0.13 1.02 3.31 -66.10 -0.22 0.80 16 17 H 0.11 0.97 7.55 -51.93 -0.39 0.58 16 18 N -0.71 -3.88 5.11 -52.03 -0.27 -4.15 16 19 C 0.52 3.86 7.60 -10.99 -0.08 3.78 16 20 O -0.51 -6.28 14.48 5.55 0.08 -6.20 16 21 C -0.20 -0.77 5.75 -27.89 -0.16 -0.93 16 22 C 0.47 3.61 2.89 37.16 0.11 3.71 16 23 F -0.17 -1.78 16.40 2.25 0.04 -1.75 16 24 F -0.18 -1.31 17.32 2.25 0.04 -1.27 16 25 F -0.17 -1.67 16.40 2.25 0.04 -1.64 16 26 C 0.10 1.16 6.63 -3.07 -0.02 1.14 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.09 1.62 7.85 -51.92 -0.41 1.21 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.09 0.74 7.48 -51.93 -0.39 0.35 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.38 8.01 -51.93 -0.42 -0.03 16 34 H 0.41 0.87 8.56 -40.82 -0.35 0.52 16 35 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.14 0.08 8.14 -51.93 -0.42 -0.35 16 37 H 0.07 0.85 8.03 -51.93 -0.42 0.44 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -38.31 353.94 -6.43 -44.73 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -4.45 Total: -4.42 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.26 Total: 3.25 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.10 Total: -38.51 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.17 Total: -18.02 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.11 Total: -4.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.31 -6.43 -44.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493818896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.037 kcal (2) G-P(sol) polarization free energy of solvation -38.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds