Wall clock time and date at job start Sat Apr 11 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99841 * 2 1 4 4 H 1.48500 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47166 * 299.99990 * 3 2 1 6 6 H 1.48500 * 109.46952 * 60.00385 * 3 2 1 7 7 C 1.38802 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99818 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47000 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99955 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00169 * 179.97438 * 11 10 9 14 14 C 1.47471 * 125.62717 * 0.02852 * 13 11 10 15 15 C 1.54906 * 104.81210 * 204.04395 * 14 13 11 16 16 C 1.55156 * 101.61451 * 323.04512 * 15 14 13 17 17 H 1.09005 * 110.72052 * 277.11432 * 16 15 14 18 18 N 1.46500 * 110.71754 * 154.02296 * 16 15 14 19 19 C 1.34781 * 120.00046 * 154.99616 * 18 16 15 20 20 O 1.21287 * 119.99721 * 359.97438 * 19 18 16 21 21 C 1.50692 * 120.00219 * 179.97438 * 19 18 16 22 22 C 1.53000 * 109.47499 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47014 * 59.99777 * 22 21 19 24 24 F 1.39894 * 109.47627 * 180.02562 * 22 21 19 25 25 F 1.39908 * 109.46818 * 300.00164 * 22 21 19 26 26 C 1.47017 * 125.65312 * 179.97438 * 13 11 10 27 27 H 0.96999 * 120.00314 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47244 * 59.99951 * 10 9 7 29 29 H 1.09000 * 109.47048 * 299.99434 * 10 9 7 30 30 H 1.09008 * 110.34870 * 85.22524 * 14 13 11 31 31 H 1.09001 * 110.40581 * 322.89560 * 14 13 11 32 32 H 1.09002 * 111.00655 * 204.94912 * 15 14 13 33 33 H 1.09002 * 111.00329 * 81.13838 * 15 14 13 34 34 H 0.96999 * 120.00052 * 334.99589 * 18 16 15 35 35 H 1.09004 * 109.47326 * 299.99995 * 21 19 18 36 36 H 1.09004 * 109.47431 * 59.99998 * 21 19 18 37 37 H 1.08998 * 109.88206 * 59.58080 * 26 13 11 38 38 H 1.09004 * 110.01118 * 298.49173 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 4.3157 -6.2442 0.0003 15 6 4.8023 -7.5822 -0.6102 16 6 3.7731 -8.5851 -0.0251 17 1 4.0591 -8.8875 0.9823 18 7 3.6367 -9.7550 -0.8963 19 6 3.2226 -10.9313 -0.3850 20 8 2.9633 -11.0214 0.7964 21 6 3.0817 -12.1346 -1.2811 22 6 2.5995 -13.3304 -0.4574 23 9 1.3605 -13.0305 0.1188 24 9 2.4692 -14.4476 -1.2892 25 9 3.5285 -13.6066 0.5516 26 6 2.4668 -7.7640 0.0018 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7312 0.8905 29 1 3.1245 -3.7313 -0.8895 30 1 4.6885 -6.1341 1.0187 31 1 4.6400 -5.4057 -0.6160 32 1 5.8124 -7.8195 -0.2764 33 1 4.7485 -7.5574 -1.6986 34 1 3.8444 -9.6831 -1.8410 35 1 2.3575 -11.9196 -2.0670 36 1 4.0469 -12.3681 -1.7305 37 1 1.8692 -7.9894 -0.8813 38 1 1.8998 -7.9986 0.9027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493818896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:36 Heat of formation + Delta-G solvation = -250.774278 kcal Electronic energy + Delta-G solvation = -26519.862797 eV Core-core repulsion = 21879.422997 eV Total energy + Delta-G solvation = -4640.439800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.06829 -48.59544 -48.54366 -41.45486 -40.54546 -38.51551 -35.49120 -34.58906 -33.19882 -31.87981 -30.88157 -29.02475 -27.65900 -25.48164 -24.35452 -22.33568 -21.82762 -20.73268 -19.82288 -19.58848 -19.53784 -18.64246 -18.09690 -18.00228 -17.44539 -16.89063 -16.74028 -16.49280 -16.32440 -15.72939 -15.48088 -15.43861 -15.25854 -14.95272 -14.77871 -14.71784 -14.66267 -14.53770 -14.44865 -14.04751 -13.71600 -13.51584 -13.29532 -13.16238 -13.05799 -12.91463 -12.81613 -12.71479 -12.60028 -11.88087 -11.70762 -11.26867 -11.16201 -11.04881 -10.33845 -10.27784 -9.77451 -8.69086 -8.34945 -6.13927 1.19301 1.35853 1.42166 1.43083 1.51094 1.54064 1.58678 1.94218 2.18217 2.26906 2.74183 2.99480 3.07363 3.11954 3.21146 3.41369 3.48546 3.74399 3.87785 4.01796 4.15763 4.18908 4.23967 4.28659 4.32594 4.44026 4.63005 4.72209 4.74906 4.96714 5.04633 5.27518 5.35121 5.42032 6.19886 6.30242 6.34177 7.03554 7.06217 7.07478 8.74613 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.035802 B = 0.001849 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.894904 B =15139.573795 C =15608.633924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.086 0.914 9 S -0.158 6.158 10 C -0.117 4.117 11 C 0.544 3.456 12 O -0.570 6.570 13 N -0.615 5.615 14 C 0.086 3.914 15 C -0.117 4.117 16 C 0.145 3.855 17 H 0.102 0.898 18 N -0.696 5.696 19 C 0.514 3.486 20 O -0.568 6.568 21 C -0.181 4.181 22 C 0.461 3.539 23 F -0.194 7.194 24 F -0.180 7.180 25 F -0.189 7.189 26 C 0.095 3.905 27 H 0.271 0.729 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.427 0.573 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.065 0.935 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.581 -25.943 -7.473 32.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.690 4.690 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.268 4.268 11 C 0.332 3.668 12 O -0.449 6.449 13 N -0.351 5.351 14 C -0.035 4.035 15 C -0.155 4.155 16 C 0.038 3.962 17 H 0.120 0.880 18 N -0.349 5.349 19 C 0.300 3.700 20 O -0.446 6.446 21 C -0.221 4.221 22 C 0.407 3.593 23 F -0.176 7.176 24 F -0.162 7.162 25 F -0.171 7.171 26 C -0.030 4.030 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.266 0.734 35 H 0.191 0.809 36 H 0.201 0.799 37 H 0.083 0.917 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.440 -26.192 -6.624 31.117 hybrid contribution 0.852 1.042 0.092 1.349 sum 16.292 -25.150 -6.531 30.670 Atomic orbital electron populations 1.70197 1.08064 1.28564 1.48085 1.26173 0.95982 1.03453 0.93758 0.84873 0.78713 0.76154 0.77999 1.17718 1.19937 1.20127 1.23220 0.95385 0.91660 1.58732 0.89617 1.85682 1.10768 0.99531 1.97051 1.23289 1.03342 0.93424 1.06734 1.19898 0.85406 0.86139 0.75307 1.90698 1.17422 1.85819 1.50931 1.48358 1.08438 1.04873 1.73413 1.22759 0.77150 1.00531 1.03080 1.23098 0.99492 0.90370 1.02543 1.21828 0.93025 0.84849 0.96483 0.88020 1.45584 1.67704 1.07852 1.13740 1.20439 0.76268 0.85131 0.88158 1.90866 1.50182 1.85162 1.18423 1.23047 1.11287 0.88501 0.99265 1.20295 0.75212 0.84959 0.78859 1.93205 1.45057 1.93165 1.86132 1.93209 1.95842 1.55773 1.71328 1.93198 1.65898 1.94651 1.63346 1.22339 0.98755 0.80427 1.01447 0.92017 0.87402 0.86817 0.89601 0.88427 0.85602 0.87642 0.73396 0.80916 0.79884 0.91665 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 2 C 0.01 0.61 5.49 84.86 0.47 1.08 16 3 Si 1.00 43.05 29.55 68.60 2.03 45.07 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -30.61 9.50 67.95 0.65 -29.96 16 8 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.16 -8.78 20.57 -56.49 -1.16 -9.95 16 10 C -0.12 -4.60 5.16 71.24 0.37 -4.24 16 11 C 0.54 20.82 7.87 87.66 0.69 21.51 16 12 O -0.57 -27.82 16.19 -3.02 -0.05 -27.87 16 13 N -0.62 -16.11 3.33 -811.70 -2.70 -18.81 16 14 C 0.09 1.26 6.69 86.85 0.58 1.85 16 15 C -0.12 -0.78 6.71 31.98 0.21 -0.56 16 16 C 0.14 1.87 3.31 46.18 0.15 2.02 16 17 H 0.10 1.62 7.55 -2.38 -0.02 1.60 16 18 N -0.70 -5.40 5.11 -436.92 -2.23 -7.63 16 19 C 0.51 6.64 7.60 87.65 0.67 7.30 16 20 O -0.57 -13.88 14.48 -3.05 -0.04 -13.92 16 21 C -0.18 -0.85 5.75 29.85 0.17 -0.68 16 22 C 0.46 6.53 2.89 71.98 0.21 6.73 16 23 F -0.19 -4.10 16.40 44.97 0.74 -3.36 16 24 F -0.18 -2.31 17.32 44.97 0.78 -1.53 16 25 F -0.19 -3.58 16.40 44.97 0.74 -2.84 16 26 C 0.09 2.20 6.63 86.73 0.57 2.78 16 27 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 29 H 0.11 3.90 7.85 -2.40 -0.02 3.88 16 30 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.10 1.27 7.48 -2.39 -0.02 1.25 16 32 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.11 0.35 8.01 -2.39 -0.02 0.33 16 34 H 0.43 -0.14 8.56 -92.71 -0.79 -0.94 16 35 H 0.17 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.18 -0.72 8.14 -2.38 -0.02 -0.74 16 37 H 0.06 1.58 8.03 -2.39 -0.02 1.56 16 38 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -91.07 353.94 3.44 -87.63 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 0.32 Total: 1.15 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 4.74 Total: 7.83 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -4.65 Total: -82.21 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.09 Total: -41.79 kcal Atomic # 9 Polarization: -9.99 SS G_CDS: 2.25 Total: -7.74 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.95 kcal Total: -91.07 3.44 -87.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493818896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.146 kcal (2) G-P(sol) polarization free energy of solvation -91.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds