Wall clock time and date at job start Sat Apr 11 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48500 * 109.46893 * 269.99985 * 3 2 1 5 5 H 1.48494 * 109.47066 * 29.99317 * 3 2 1 6 6 H 1.48496 * 109.47218 * 149.99811 * 3 2 1 7 7 C 1.38800 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00264 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00044 * 180.02562 * 7 2 1 10 10 C 1.80990 * 100.00165 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47221 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99688 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99887 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99693 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.64034 * 328.13352 * 14 13 11 16 16 C 1.55149 * 110.72085 * 91.47549 * 14 13 11 17 17 C 1.54913 * 101.58081 * 153.86559 * 16 14 13 18 18 N 1.47422 * 104.83234 * 322.98715 * 17 16 14 19 19 C 1.34770 * 125.64787 * 204.16584 * 18 17 16 20 20 O 1.21285 * 119.99823 * 179.97438 * 19 18 17 21 21 C 1.50696 * 120.00308 * 359.95740 * 19 18 17 22 22 C 1.52998 * 109.47378 * 180.02562 * 21 19 18 23 23 F 1.39901 * 109.47154 * 60.00064 * 22 21 19 24 24 F 1.39899 * 109.47441 * 179.97438 * 22 21 19 25 25 F 1.39897 * 109.47327 * 300.00073 * 22 21 19 26 26 C 1.47022 * 108.70013 * 24.13136 * 18 17 16 27 27 H 0.96994 * 119.99334 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47206 * 60.00591 * 10 9 7 29 29 H 1.08994 * 109.47584 * 300.00054 * 10 9 7 30 30 H 0.97000 * 120.00190 * 359.97438 * 13 11 10 31 31 H 1.09005 * 111.00403 * 271.93754 * 16 14 13 32 32 H 1.08993 * 111.00882 * 35.79071 * 16 14 13 33 33 H 1.09006 * 110.36719 * 204.14961 * 17 16 14 34 34 H 1.09007 * 110.45916 * 81.87684 * 17 16 14 35 35 H 1.09000 * 109.46898 * 300.00236 * 21 19 18 36 36 H 1.09004 * 109.46949 * 60.00090 * 21 19 18 37 37 H 1.09005 * 109.88380 * 239.51983 * 26 18 17 38 38 H 1.09005 * 110.01113 * 118.43119 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2327 0.0021 12 8 6.3439 -2.2966 0.0035 13 7 6.0455 -4.4949 0.0016 14 6 7.4906 -4.7361 0.0033 15 1 8.0129 -3.9443 -0.5338 16 6 8.0240 -4.8646 1.4545 17 6 9.2806 -5.7465 1.2471 18 7 8.9004 -6.7026 0.1913 19 6 9.4557 -7.9143 -0.0080 20 8 9.0616 -8.6208 -0.9117 21 6 10.5667 -8.3913 0.8916 22 6 11.0154 -9.7864 0.4521 23 9 11.4746 -9.7342 -0.8684 24 9 12.0471 -10.2290 1.2868 25 9 9.9353 -10.6716 0.5355 26 6 7.8146 -6.1157 -0.6075 27 1 -0.4849 0.8401 -0.0004 28 1 3.6440 -3.4315 -0.8894 29 1 3.6433 -3.4319 0.8906 30 1 5.4289 -5.2437 0.0009 31 1 8.2938 -3.8891 1.8594 32 1 7.2974 -5.3643 2.0951 33 1 9.5285 -6.2760 2.1670 34 1 10.1240 -5.1375 0.9216 35 1 11.4084 -7.7019 0.8262 36 1 10.2090 -8.4316 1.9205 37 1 6.9340 -6.7566 -0.5637 38 1 8.1353 -5.9969 -1.6425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524116090.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:46 Heat of formation + Delta-G solvation = -221.818819 kcal Electronic energy + Delta-G solvation = -26447.141204 eV Core-core repulsion = 21807.957007 eV Total energy + Delta-G solvation = -4639.184197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.49146 -48.03306 -47.90314 -40.80515 -39.47617 -37.78709 -34.47088 -32.64288 -32.48240 -31.18254 -29.85089 -28.31687 -25.67268 -24.97052 -23.53319 -21.79260 -20.73896 -20.19163 -19.10362 -18.97550 -18.07351 -17.80968 -17.38659 -17.12643 -16.41175 -15.90135 -15.70654 -15.14661 -15.05164 -14.96207 -14.81255 -14.56055 -14.33622 -14.09202 -14.05996 -14.03564 -13.84346 -13.55984 -13.42417 -13.16432 -12.84297 -12.74015 -12.69239 -12.46372 -12.25055 -11.87452 -11.35335 -11.31784 -11.05202 -10.68485 -10.62155 -9.91468 -9.69420 -9.34847 -9.17629 -9.04412 -8.57169 -6.98094 -6.33302 -4.05930 1.86987 1.89732 2.39118 2.69180 2.78723 3.18852 3.21630 3.29474 3.40706 3.45581 3.52745 3.56526 3.92891 4.05401 4.22621 4.28386 4.41134 4.46021 4.59005 4.65079 4.71666 4.74650 4.95208 5.05667 5.14545 5.25970 5.37640 5.49333 5.60991 5.67387 5.73300 5.93425 6.32941 6.75311 7.38275 7.41985 7.89650 8.31037 8.37352 9.12530 10.75873 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.041879 B = 0.001780 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.436480 B =15726.475504 C =15994.175021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.140 6.140 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.729 5.729 14 C 0.137 3.863 15 H 0.110 0.890 16 C -0.146 4.146 17 C 0.094 3.906 18 N -0.612 5.612 19 C 0.534 3.466 20 O -0.517 6.517 21 C -0.192 4.192 22 C 0.473 3.527 23 F -0.173 7.173 24 F -0.182 7.182 25 F -0.172 7.172 26 C 0.103 3.897 27 H 0.271 0.729 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.402 0.598 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.544 -17.971 4.742 29.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.276 4.276 11 C 0.322 3.678 12 O -0.389 6.389 13 N -0.384 5.384 14 C 0.031 3.969 15 H 0.128 0.872 16 C -0.185 4.185 17 C -0.029 4.029 18 N -0.347 5.347 19 C 0.320 3.680 20 O -0.392 6.392 21 C -0.233 4.233 22 C 0.418 3.582 23 F -0.154 7.154 24 F -0.163 7.163 25 F -0.154 7.154 26 C -0.020 4.020 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.237 0.763 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.097 0.903 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 24.474 -16.786 4.214 29.975 hybrid contribution -1.031 -0.841 0.048 1.331 sum 23.443 -17.627 4.262 29.638 Atomic orbital electron populations 1.69940 1.05913 1.27810 1.47876 1.24726 0.94470 0.98996 0.93168 0.86726 0.81837 0.83272 0.79944 1.19194 1.19923 1.15954 1.22305 0.88176 0.97564 1.58971 0.89344 1.84781 1.09437 0.99768 1.97446 1.23285 0.93659 1.04635 1.06000 1.20323 0.90722 0.82041 0.74741 1.90703 1.58719 1.42098 1.47430 1.45924 1.06197 1.08504 1.77734 1.21844 0.82786 0.96290 0.95994 0.87190 1.23265 0.96539 1.01093 0.97633 1.22528 0.98556 0.91069 0.90707 1.48240 1.37226 1.16084 1.33168 1.19372 0.83009 0.80573 0.85013 1.90864 1.62314 1.53987 1.32053 1.22945 1.01946 0.94424 1.03955 1.19679 0.75224 0.87861 0.75448 1.93236 1.89041 1.96674 1.36442 1.93211 1.60261 1.91035 1.71817 1.93236 1.54929 1.71325 1.95887 1.22162 0.90585 0.93579 0.95660 0.91897 0.88319 0.88319 0.76271 0.88531 0.89744 0.89898 0.90117 0.84228 0.84255 0.90291 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 13.97 55.49 0.78 -25.29 16 2 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 3 Si 0.86 21.25 27.74 -169.99 -4.72 16.54 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 7 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 8 H 0.09 2.59 8.03 -52.48 -0.42 2.16 16 9 S -0.14 -3.40 18.55 -107.50 -1.99 -5.40 16 10 C -0.13 -2.23 6.16 36.01 0.22 -2.01 16 11 C 0.54 8.33 7.85 -10.98 -0.09 8.25 16 12 O -0.52 -9.88 15.51 5.56 0.09 -9.79 16 13 N -0.73 -7.59 5.18 -52.03 -0.27 -7.86 16 14 C 0.14 1.18 3.32 -66.10 -0.22 0.96 16 15 H 0.11 1.10 7.55 -51.93 -0.39 0.71 16 16 C -0.15 -0.96 6.77 -24.58 -0.17 -1.12 16 17 C 0.09 0.40 6.69 -2.53 -0.02 0.39 16 18 N -0.61 -4.21 3.33 -170.51 -0.57 -4.78 16 19 C 0.53 4.42 7.62 -10.99 -0.08 4.33 16 20 O -0.52 -6.54 15.16 5.55 0.08 -6.45 16 21 C -0.19 -0.87 4.76 -27.89 -0.13 -1.00 16 22 C 0.47 3.60 2.89 37.16 0.11 3.71 16 23 F -0.17 -1.70 16.40 2.25 0.04 -1.66 16 24 F -0.18 -1.27 17.32 2.25 0.04 -1.24 16 25 F -0.17 -1.70 16.40 2.25 0.04 -1.66 16 26 C 0.10 0.80 6.62 -3.06 -0.02 0.78 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 29 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.40 3.22 8.37 -40.82 -0.34 2.88 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.16 7.48 -51.93 -0.39 -0.23 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.14 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.14 0.24 7.85 -51.93 -0.41 -0.17 16 37 H 0.08 0.62 7.72 -51.93 -0.40 0.22 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -36.12 350.98 -5.84 -41.96 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.47 Total: -2.25 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.18 Total: 2.59 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.06 Total: -37.92 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.17 Total: -16.25 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.11 Total: -4.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.72 Total: 16.54 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.12 -5.84 -41.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524116090.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.856 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds