Wall clock time and date at job start Sat Apr 11 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48500 * 109.46893 * 269.99985 * 3 2 1 5 5 H 1.48494 * 109.47066 * 29.99317 * 3 2 1 6 6 H 1.48496 * 109.47218 * 149.99811 * 3 2 1 7 7 C 1.38800 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00264 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00044 * 180.02562 * 7 2 1 10 10 C 1.80990 * 100.00165 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47221 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99688 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99887 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99693 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.64034 * 328.13352 * 14 13 11 16 16 C 1.55149 * 110.72085 * 91.47549 * 14 13 11 17 17 C 1.54913 * 101.58081 * 153.86559 * 16 14 13 18 18 N 1.47422 * 104.83234 * 322.98715 * 17 16 14 19 19 C 1.34770 * 125.64787 * 204.16584 * 18 17 16 20 20 O 1.21285 * 119.99823 * 179.97438 * 19 18 17 21 21 C 1.50696 * 120.00308 * 359.95740 * 19 18 17 22 22 C 1.52998 * 109.47378 * 180.02562 * 21 19 18 23 23 F 1.39901 * 109.47154 * 60.00064 * 22 21 19 24 24 F 1.39899 * 109.47441 * 179.97438 * 22 21 19 25 25 F 1.39897 * 109.47327 * 300.00073 * 22 21 19 26 26 C 1.47022 * 108.70013 * 24.13136 * 18 17 16 27 27 H 0.96994 * 119.99334 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47206 * 60.00591 * 10 9 7 29 29 H 1.08994 * 109.47584 * 300.00054 * 10 9 7 30 30 H 0.97000 * 120.00190 * 359.97438 * 13 11 10 31 31 H 1.09005 * 111.00403 * 271.93754 * 16 14 13 32 32 H 1.08993 * 111.00882 * 35.79071 * 16 14 13 33 33 H 1.09006 * 110.36719 * 204.14961 * 17 16 14 34 34 H 1.09007 * 110.45916 * 81.87684 * 17 16 14 35 35 H 1.09000 * 109.46898 * 300.00236 * 21 19 18 36 36 H 1.09004 * 109.46949 * 60.00090 * 21 19 18 37 37 H 1.09005 * 109.88380 * 239.51983 * 26 18 17 38 38 H 1.09005 * 110.01113 * 118.43119 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2327 0.0021 12 8 6.3439 -2.2966 0.0035 13 7 6.0455 -4.4949 0.0016 14 6 7.4906 -4.7361 0.0033 15 1 8.0129 -3.9443 -0.5338 16 6 8.0240 -4.8646 1.4545 17 6 9.2806 -5.7465 1.2471 18 7 8.9004 -6.7026 0.1913 19 6 9.4557 -7.9143 -0.0080 20 8 9.0616 -8.6208 -0.9117 21 6 10.5667 -8.3913 0.8916 22 6 11.0154 -9.7864 0.4521 23 9 11.4746 -9.7342 -0.8684 24 9 12.0471 -10.2290 1.2868 25 9 9.9353 -10.6716 0.5355 26 6 7.8146 -6.1157 -0.6075 27 1 -0.4849 0.8401 -0.0004 28 1 3.6440 -3.4315 -0.8894 29 1 3.6433 -3.4319 0.8906 30 1 5.4289 -5.2437 0.0009 31 1 8.2938 -3.8891 1.8594 32 1 7.2974 -5.3643 2.0951 33 1 9.5285 -6.2760 2.1670 34 1 10.1240 -5.1375 0.9216 35 1 11.4084 -7.7019 0.8262 36 1 10.2090 -8.4316 1.9205 37 1 6.9340 -6.7566 -0.5637 38 1 8.1353 -5.9969 -1.6425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524116090.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:45 Heat of formation + Delta-G solvation = -248.333529 kcal Electronic energy + Delta-G solvation = -26448.290968 eV Core-core repulsion = 21807.957007 eV Total energy + Delta-G solvation = -4640.333961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.08610 -48.60753 -48.56092 -41.48670 -40.52285 -38.57469 -35.41414 -34.66151 -33.22887 -31.95335 -30.75956 -29.21401 -27.83953 -25.58858 -24.04493 -22.60930 -21.74058 -20.77613 -19.90392 -19.65864 -19.56795 -18.46531 -18.09433 -18.05221 -17.40748 -17.08827 -16.77793 -16.41147 -16.30312 -15.84173 -15.47185 -15.41448 -15.09498 -14.96383 -14.91847 -14.75234 -14.73363 -14.67919 -14.57424 -14.07385 -13.71855 -13.61577 -13.33554 -13.30652 -13.09448 -13.00665 -12.91934 -12.73526 -12.54835 -11.93456 -11.85577 -11.29434 -11.16315 -11.02626 -10.52949 -10.19877 -9.84834 -8.98069 -8.50680 -6.21336 0.98406 1.32497 1.32837 1.34605 1.48376 1.54322 1.58507 1.89451 2.24308 2.28330 2.70345 2.72130 2.87644 2.92439 3.04712 3.34914 3.52902 3.69448 3.84512 4.00984 4.12271 4.14581 4.21962 4.25380 4.29025 4.49425 4.57466 4.72951 4.75790 4.93358 5.08199 5.13706 5.42222 5.71334 6.12553 6.22256 6.41011 6.83225 6.94389 7.15445 8.61641 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.041879 B = 0.001780 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.436480 B =15726.475504 C =15994.175021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.043 3.957 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.234 1.234 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.171 6.171 10 C -0.114 4.114 11 C 0.543 3.457 12 O -0.555 6.555 13 N -0.706 5.706 14 C 0.135 3.865 15 H 0.096 0.904 16 C -0.142 4.142 17 C 0.097 3.903 18 N -0.609 5.609 19 C 0.528 3.472 20 O -0.571 6.571 21 C -0.178 4.178 22 C 0.464 3.536 23 F -0.191 7.191 24 F -0.178 7.178 25 F -0.190 7.190 26 C 0.107 3.893 27 H 0.276 0.724 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.417 0.583 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.078 0.922 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.782 -18.253 6.191 32.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.162 4.162 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.157 1.157 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.055 5.945 10 C -0.265 4.265 11 C 0.329 3.671 12 O -0.432 6.432 13 N -0.360 5.360 14 C 0.029 3.971 15 H 0.114 0.886 16 C -0.181 4.181 17 C -0.025 4.025 18 N -0.342 5.342 19 C 0.317 3.683 20 O -0.450 6.450 21 C -0.218 4.218 22 C 0.410 3.590 23 F -0.172 7.172 24 F -0.160 7.160 25 F -0.172 7.172 26 C -0.017 4.017 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.254 0.746 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.116 0.884 35 H 0.193 0.807 36 H 0.194 0.806 37 H 0.097 0.903 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 26.724 -17.102 5.690 32.233 hybrid contribution -1.699 -0.936 -0.416 1.984 sum 25.024 -18.038 5.274 31.295 Atomic orbital electron populations 1.70026 1.07377 1.29006 1.49164 1.25608 0.95299 1.02390 0.92939 0.85841 0.80742 0.79461 0.80165 1.18819 1.18524 1.15725 1.22480 0.90449 0.96621 1.58188 0.92045 1.84653 1.06183 1.06071 1.97585 1.23285 0.96033 0.99681 1.07511 1.19836 0.89251 0.83163 0.74869 1.90696 1.59081 1.43608 1.49821 1.45671 1.07684 1.07105 1.75547 1.21939 0.80991 0.96237 0.97886 0.88560 1.23225 0.97711 1.01538 0.95652 1.22747 0.97678 0.90620 0.91436 1.48284 1.36553 1.16078 1.33310 1.19989 0.83335 0.80214 0.84762 1.90847 1.64156 1.55503 1.34492 1.23031 1.01721 0.92563 1.04497 1.20195 0.74855 0.89148 0.74829 1.93198 1.89240 1.96792 1.38004 1.93215 1.60076 1.91194 1.71474 1.93198 1.55816 1.72272 1.95908 1.22002 0.91196 0.93023 0.95446 0.91421 0.87023 0.86687 0.74589 0.89028 0.89314 0.86284 0.88410 0.80684 0.80587 0.90328 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.18 13.97 21.65 0.30 -54.88 16 2 C 0.04 2.47 5.50 84.86 0.47 2.94 16 3 Si 0.92 43.94 27.74 68.60 1.90 45.84 16 4 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.23 -11.04 6.74 99.48 0.67 -10.37 16 7 C -0.53 -30.07 10.04 67.95 0.68 -29.39 16 8 H 0.06 3.69 8.03 -2.91 -0.02 3.67 16 9 S -0.17 -8.25 18.55 -56.49 -1.05 -9.29 16 10 C -0.11 -3.94 6.16 71.24 0.44 -3.50 16 11 C 0.54 16.17 7.85 87.66 0.69 16.86 16 12 O -0.55 -20.78 15.51 -3.01 -0.05 -20.83 16 13 N -0.71 -13.37 5.18 -436.92 -2.26 -15.63 16 14 C 0.14 2.06 3.32 46.18 0.15 2.21 16 15 H 0.10 1.82 7.55 -2.39 -0.02 1.80 16 16 C -0.14 -1.43 6.77 31.98 0.22 -1.21 16 17 C 0.10 0.42 6.69 86.86 0.58 1.00 16 18 N -0.61 -6.62 3.33 -811.77 -2.70 -9.32 16 19 C 0.53 7.51 7.62 87.66 0.67 8.18 16 20 O -0.57 -14.13 15.16 -3.04 -0.05 -14.17 16 21 C -0.18 -0.96 4.76 29.85 0.14 -0.82 16 22 C 0.46 6.27 2.89 71.98 0.21 6.48 16 23 F -0.19 -3.64 16.40 44.97 0.74 -2.90 16 24 F -0.18 -2.12 17.32 44.97 0.78 -1.34 16 25 F -0.19 -3.62 16.40 44.97 0.74 -2.88 16 26 C 0.11 1.48 6.62 86.73 0.57 2.06 16 27 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 29 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 30 H 0.42 5.71 8.37 -92.71 -0.78 4.93 16 31 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.12 -0.25 7.48 -2.38 -0.02 -0.27 16 34 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.18 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.18 -0.34 7.85 -2.39 -0.02 -0.36 16 37 H 0.08 1.11 7.72 -2.38 -0.02 1.10 16 38 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -81.64 350.98 3.48 -78.16 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 0.31 Total: 2.43 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 4.82 Total: 4.80 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -4.66 Total: -79.82 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.09 Total: -35.00 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 2.25 Total: -7.12 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.05 Total: -9.29 kcal Total: -81.64 3.48 -78.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524116090.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.175 kcal (2) G-P(sol) polarization free energy of solvation -81.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds