Wall clock time and date at job start Sat Apr 11 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 120.00410 * 2 1 4 4 H 1.48500 * 109.47298 * 275.21553 * 3 2 1 5 5 H 1.48508 * 109.47302 * 35.21403 * 3 2 1 6 6 H 1.48500 * 109.47294 * 155.21390 * 3 2 1 7 7 C 1.38894 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99661 * 347.64413 * 7 2 1 9 9 N 1.37212 * 120.00094 * 167.63397 * 7 2 1 10 10 C 1.34779 * 120.00007 * 131.47783 * 9 7 2 11 11 O 1.21267 * 120.00189 * 179.97438 * 10 9 7 12 12 C 1.50700 * 119.99699 * 359.97438 * 10 9 7 13 13 N 1.46500 * 109.46768 * 180.02562 * 12 10 9 14 14 C 1.34948 * 126.03443 * 124.72127 * 13 12 10 15 15 C 1.35320 * 107.74829 * 179.84041 * 14 13 12 16 16 C 1.39875 * 107.91518 * 0.41731 * 15 14 13 17 17 C 1.50698 * 125.89747 * 179.71725 * 16 15 14 18 18 F 1.39892 * 109.47177 * 185.00094 * 17 16 15 19 19 F 1.39899 * 109.47089 * 305.00481 * 17 16 15 20 20 F 1.39898 * 109.47076 * 65.00053 * 17 16 15 21 21 N 1.30837 * 108.20263 * 359.74060 * 16 15 14 22 22 C 1.39429 * 120.00040 * 311.47283 * 9 7 2 23 23 C 1.39067 * 119.69664 * 346.80686 * 22 9 7 24 24 C 1.38381 * 119.09686 * 180.02562 * 23 22 9 25 25 C 1.38827 * 118.49013 * 359.97438 * 24 23 22 26 26 C 1.38138 * 119.31310 * 0.25844 * 25 24 23 27 27 N 1.31881 * 120.85585 * 359.46925 * 26 25 24 28 28 H 0.97006 * 119.99716 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47226 * 300.00534 * 12 10 9 30 30 H 1.09000 * 109.47477 * 60.00344 * 12 10 9 31 31 H 1.08005 * 126.12674 * 359.97438 * 14 13 12 32 32 H 1.07991 * 126.04217 * 180.15901 * 15 14 13 33 33 H 1.08004 * 120.45098 * 0.02562 * 23 22 9 34 34 H 1.08001 * 120.75090 * 180.02562 * 24 23 22 35 35 H 1.08007 * 120.33747 * 179.97438 * 25 24 23 36 36 H 1.08004 * 119.57563 * 179.74242 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3855 2.1100 -1.3943 5 1 1.5051 2.6184 0.8074 6 1 3.5965 1.4107 0.5869 7 6 2.0086 -1.2028 0.0005 8 1 1.4873 -2.1272 0.2011 9 7 3.3568 -1.2168 -0.2539 10 6 4.1889 -1.8981 0.5584 11 8 5.3804 -1.9108 0.3332 12 6 3.6386 -2.6442 1.7464 13 7 4.7362 -3.2970 2.4643 14 6 5.0290 -3.1470 3.7731 15 6 6.1070 -3.9182 4.0457 16 6 6.4918 -4.5541 2.8607 17 6 7.6520 -5.5029 2.7036 18 9 7.7940 -5.8466 1.3550 19 9 8.8238 -4.8851 3.1534 20 9 7.4151 -6.6578 3.4567 21 7 5.6708 -4.1824 1.9122 22 6 3.8660 -0.5261 -1.3529 23 6 2.9994 -0.0597 -2.3354 24 6 3.5182 0.6238 -3.4211 25 6 4.8912 0.8184 -3.4865 26 6 5.6933 0.3233 -2.4768 27 7 5.1701 -0.3200 -1.4512 28 1 -0.4850 0.8401 -0.0004 29 1 3.1341 -1.9447 2.4129 30 1 2.9283 -3.3974 1.4054 31 1 4.4968 -2.5247 4.4774 32 1 6.5880 -4.0210 5.0071 33 1 1.9359 -0.2286 -2.2523 34 1 2.8695 0.9980 -4.1993 35 1 5.3280 1.3474 -4.3207 36 1 6.7624 0.4686 -2.5255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527047118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:48 Heat of formation + Delta-G solvation = -30.098821 kcal Electronic energy + Delta-G solvation = -29322.625171 eV Core-core repulsion = 24588.603376 eV Total energy + Delta-G solvation = -4734.021795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.04474 -47.59077 -47.51965 -41.32554 -40.23212 -38.27105 -35.39688 -33.48598 -32.54535 -31.66077 -30.42504 -29.85928 -28.27372 -25.73455 -25.35615 -23.02050 -22.37447 -21.33024 -20.96302 -19.53679 -18.58214 -18.44826 -18.11714 -17.81544 -16.82424 -16.15921 -16.09518 -15.61668 -15.23881 -14.83520 -14.58080 -14.40562 -14.39618 -13.97908 -13.91854 -13.82259 -13.69376 -13.68275 -13.60597 -13.37586 -13.25443 -12.96026 -12.48764 -12.43460 -12.15221 -11.88772 -11.59525 -11.23193 -10.97215 -10.77989 -10.36500 -9.88945 -9.77299 -9.37050 -9.31642 -8.87915 -8.72278 -8.34269 -7.50383 -6.84329 -4.70442 1.69868 1.74463 1.92976 2.10760 2.43693 2.89036 2.93516 3.04886 3.14289 3.35568 3.63110 3.85384 3.90066 4.10478 4.37430 4.48824 4.72601 4.80121 4.92394 5.10090 5.34896 5.42886 5.50591 5.54414 5.60061 5.66750 5.77250 5.81767 5.94052 6.27597 6.41124 6.57183 6.78816 6.89271 6.97654 7.33426 7.48928 7.67050 7.84019 8.38852 8.62133 8.85990 9.28349 10.20228 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.003616 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.653281 B = 7741.092897 C = 8826.706086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.090 3.910 3 Si 0.857 3.143 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.377 4.377 8 H 0.116 0.884 9 N -0.403 5.403 10 C 0.481 3.519 11 O -0.489 6.489 12 C 0.126 3.874 13 N -0.332 5.332 14 C 0.064 3.936 15 C -0.237 4.237 16 C -0.037 4.037 17 C 0.558 3.442 18 F -0.167 7.167 19 F -0.170 7.170 20 F -0.172 7.172 21 N -0.203 5.203 22 C 0.356 3.644 23 C -0.194 4.194 24 C -0.062 4.062 25 C -0.230 4.230 26 C 0.118 3.882 27 N -0.488 5.488 28 H 0.283 0.717 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.186 0.814 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 -3.085 4.601 8.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.122 4.122 3 Si 0.682 3.318 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.503 4.503 8 H 0.133 0.867 9 N -0.119 5.119 10 C 0.268 3.732 11 O -0.361 6.361 12 C 0.003 3.997 13 N -0.115 5.115 14 C -0.081 4.081 15 C -0.267 4.267 16 C -0.204 4.204 17 C 0.502 3.498 18 F -0.148 7.148 19 F -0.151 7.151 20 F -0.154 7.154 21 N -0.027 5.027 22 C 0.127 3.873 23 C -0.217 4.217 24 C -0.088 4.088 25 C -0.252 4.252 26 C -0.041 4.041 27 N -0.204 5.204 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.138 0.862 31 H 0.203 0.797 32 H 0.174 0.826 33 H 0.168 0.832 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.438 -3.446 3.957 8.306 hybrid contribution -0.152 1.378 0.077 1.389 sum 6.286 -2.068 4.034 7.750 Atomic orbital electron populations 1.69673 1.06084 1.29054 1.42718 1.25393 0.95160 0.98665 0.92972 0.87113 0.81109 0.83216 0.80362 1.17816 1.20617 1.18363 1.19108 0.80160 0.96426 1.54649 0.86663 1.41455 1.07932 1.43338 1.19140 1.20605 0.86592 0.82031 0.84017 1.90781 1.14559 1.60019 1.70773 1.21672 0.85024 0.97859 0.95157 1.48471 1.23055 1.33163 1.06793 1.22641 0.98189 1.00851 0.86409 1.21060 1.01537 1.05225 0.98885 1.21936 0.99596 1.03668 0.95156 1.16878 0.80661 0.78219 0.74045 1.93236 1.96046 1.92613 1.32945 1.93215 1.49969 1.82775 1.89172 1.93210 1.94450 1.51144 1.76565 1.77506 0.99928 1.05759 1.19503 1.19040 0.88461 0.92268 0.87529 1.21781 1.02576 1.02887 0.94502 1.21289 0.95068 0.95669 0.96800 1.21828 0.94625 1.06756 1.01971 1.22483 0.99738 0.92704 0.89178 1.67646 1.12048 1.16014 1.24654 0.90668 0.84523 0.86156 0.79684 0.82578 0.83155 0.85530 0.85862 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.37 13.96 55.49 0.77 -19.59 16 2 C 0.09 2.10 4.14 -17.49 -0.07 2.03 16 3 Si 0.86 19.15 24.50 -169.99 -4.16 14.99 16 4 H -0.25 -5.55 6.16 56.52 0.35 -5.20 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.26 -6.30 7.07 56.52 0.40 -5.90 16 7 C -0.38 -8.62 8.07 -14.90 -0.12 -8.74 16 8 H 0.12 2.64 7.63 -52.48 -0.40 2.24 16 9 N -0.40 -9.29 2.28 -60.71 -0.14 -9.43 16 10 C 0.48 10.64 7.62 -10.98 -0.08 10.56 16 11 O -0.49 -12.26 14.05 5.57 0.08 -12.18 16 12 C 0.13 2.15 5.77 -5.19 -0.03 2.12 16 13 N -0.33 -5.61 3.40 -62.54 -0.21 -5.82 16 14 C 0.06 0.85 11.45 -17.22 -0.20 0.66 16 15 C -0.24 -3.19 10.73 -40.01 -0.43 -3.62 16 16 C -0.04 -0.60 6.51 -82.40 -0.54 -1.14 16 17 C 0.56 8.33 3.51 36.00 0.13 8.45 16 18 F -0.17 -2.75 17.14 2.25 0.04 -2.71 16 19 F -0.17 -2.42 17.30 2.25 0.04 -2.38 16 20 F -0.17 -2.33 17.30 2.25 0.04 -2.29 16 21 N -0.20 -3.87 11.42 33.67 0.38 -3.49 16 22 C 0.36 8.28 5.11 -154.64 -0.79 7.49 16 23 C -0.19 -4.12 6.06 -39.22 -0.24 -4.35 16 24 C -0.06 -1.12 9.94 -39.31 -0.39 -1.51 16 25 C -0.23 -3.85 10.11 -39.40 -0.40 -4.25 16 26 C 0.12 2.24 11.18 -17.57 -0.20 2.05 16 27 N -0.49 -11.34 8.01 -12.34 -0.10 -11.44 16 28 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 29 H 0.14 1.96 8.02 -51.93 -0.42 1.54 16 30 H 0.12 1.88 7.80 -51.93 -0.41 1.47 16 31 H 0.19 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.15 3.30 6.02 -52.48 -0.32 2.98 16 34 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 35 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.15 2.31 8.06 -52.48 -0.42 1.88 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -30.84 327.94 -4.52 -35.36 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -2.84 Total: 4.33 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -3.36 Total: 9.73 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.71 Total: -49.78 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.08 Total: -12.18 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.12 Total: -7.39 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.16 Total: 14.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.84 -4.52 -35.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527047118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.259 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds