Wall clock time and date at job start Sat Apr 11 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48495 * 109.46931 * 270.00289 * 3 2 1 5 5 H 1.48500 * 109.46738 * 30.00531 * 3 2 1 6 6 H 1.48501 * 109.46755 * 150.00275 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47145 * 180.02562 * 11 10 9 13 13 O 1.42109 * 110.54012 * 291.61993 * 12 11 10 14 14 O 1.42095 * 110.54467 * 68.37106 * 12 11 10 15 15 N 1.65597 * 104.45043 * 179.97438 * 12 11 10 16 16 C 1.47016 * 125.65093 * 269.69234 * 15 12 11 17 17 C 1.54337 * 107.26901 * 178.84770 * 16 15 12 18 18 C 1.55155 * 103.01795 * 338.14183 * 17 16 15 19 19 H 1.09009 * 111.00170 * 277.22762 * 18 17 16 20 20 C 1.52999 * 111.00415 * 153.38094 * 18 17 16 21 21 S 1.81399 * 109.46986 * 72.80268 * 20 18 17 22 22 N 1.65601 * 104.44874 * 179.97438 * 21 20 18 23 23 O 1.42105 * 110.54441 * 291.62242 * 21 20 18 24 24 O 1.42095 * 110.54821 * 68.37337 * 21 20 18 25 25 C 1.47431 * 125.64756 * 89.99322 * 15 12 11 26 26 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 28 28 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 29 29 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 30 30 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 33 33 H 1.09004 * 109.87779 * 298.39196 * 16 15 12 34 34 H 1.08995 * 109.88426 * 59.55571 * 16 15 12 35 35 H 1.08997 * 110.85082 * 219.67302 * 17 16 15 36 36 H 1.09001 * 110.66877 * 96.51978 * 17 16 15 37 37 H 1.08994 * 109.47173 * 192.79704 * 20 18 17 38 38 H 1.08988 * 109.47003 * 312.80127 * 20 18 17 39 39 H 0.96996 * 119.99985 * 359.97438 * 22 21 20 40 40 H 0.97000 * 119.99707 * 179.97438 * 22 21 20 41 41 H 1.09002 * 110.36901 * 322.93705 * 25 15 12 42 42 H 1.09006 * 110.36530 * 85.14689 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 16 2.6588 -6.3660 -0.0004 13 8 3.3564 -6.4263 -1.2370 14 8 3.3547 -6.4264 1.2370 15 7 1.7084 -7.7221 -0.0005 16 6 1.2214 -8.4272 1.1941 17 6 0.3548 -9.6080 0.7077 18 6 -0.0552 -9.1740 -0.7244 19 1 -0.9156 -8.5051 -0.6986 20 6 -0.3362 -10.3916 -1.6071 21 16 -1.9079 -11.1489 -1.1101 22 7 -2.0875 -12.4380 -2.1340 23 8 -1.7924 -11.7375 0.1782 24 8 -2.9967 -10.2938 -1.4298 25 6 1.2157 -8.4259 -1.1986 26 1 -0.4850 0.8400 0.0004 27 1 0.6239 -2.5568 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6044 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 0.8531 -5.0451 0.8886 32 1 0.8537 -5.0446 -0.8913 33 1 2.0656 -8.7990 1.7749 34 1 0.6184 -7.7532 1.8024 35 1 -0.5244 -9.7304 1.3401 36 1 0.9389 -10.5279 0.6794 37 1 -0.3975 -10.0785 -2.6493 38 1 0.4690 -11.1171 -1.4925 39 1 -1.4122 -12.6216 -2.8056 40 1 -2.8680 -13.0094 -2.0621 41 1 0.9649 -7.7110 -1.9823 42 1 1.9631 -9.1339 -1.5569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001561982920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:58 Heat of formation + Delta-G solvation = -156.844947 kcal Electronic energy + Delta-G solvation = -25565.111419 eV Core-core repulsion = 21606.045392 eV Total energy + Delta-G solvation = -3959.066027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.15122 -37.41345 -36.97942 -36.33402 -35.81777 -34.69290 -33.69090 -33.32378 -32.20132 -29.95653 -27.83660 -27.14115 -23.78584 -22.69104 -21.32823 -20.57128 -19.89460 -18.98600 -18.20217 -17.87073 -17.56566 -16.90398 -16.55660 -16.19512 -15.86406 -15.75146 -15.29417 -14.56772 -14.44663 -14.39238 -14.07662 -13.74148 -13.52776 -12.91251 -12.61802 -12.57744 -12.51495 -12.35638 -12.31078 -12.20903 -12.01050 -11.90593 -11.81525 -11.68399 -11.59581 -11.27542 -11.21930 -10.94870 -10.93371 -10.92513 -10.87153 -10.44674 -9.97439 -9.56221 -9.25905 -8.98113 -8.41879 -6.06651 -4.09944 -0.26643 0.33724 2.36826 2.65696 3.15701 3.29796 3.35953 3.39939 3.66891 3.74087 3.92907 3.96144 4.20162 4.33256 4.41583 4.57547 4.73606 4.81256 4.92503 5.03286 5.09720 5.14118 5.20806 5.29732 5.44404 5.45557 5.47563 5.58503 5.71089 5.81575 5.90114 6.11195 6.27117 6.41836 6.50450 6.84609 7.55415 7.65047 7.91147 8.31326 8.96263 9.54855 11.04568 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.002337 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.288125 B =11979.355883 C =12908.101769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.613 3.387 13 O -0.957 6.957 14 O -0.955 6.955 15 N -1.019 6.019 16 C 0.120 3.880 17 C -0.141 4.141 18 C -0.097 4.097 19 H 0.106 0.894 20 C -0.613 4.613 21 S 2.612 3.388 22 N -1.254 6.254 23 O -0.957 6.957 24 O -0.960 6.960 25 C 0.137 3.863 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.412 0.588 40 H 0.420 0.580 41 H 0.083 0.917 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -28.203 -4.463 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.711 3.289 13 O -0.947 6.947 14 O -0.946 6.946 15 N -0.856 5.856 16 C -0.005 4.005 17 C -0.180 4.180 18 C -0.118 4.118 19 H 0.124 0.876 20 C -0.743 4.743 21 S 2.703 3.297 22 N -0.927 5.927 23 O -0.946 6.946 24 O -0.949 6.949 25 C 0.011 3.989 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.238 0.762 40 H 0.250 0.750 41 H 0.102 0.898 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.717 -27.629 -3.612 27.996 hybrid contribution 0.189 0.809 -0.807 1.159 sum -2.528 -26.819 -4.419 27.298 Atomic orbital electron populations 1.69958 1.06092 1.26814 1.50531 1.25026 0.94895 0.99391 0.95089 0.86546 0.79869 0.83156 0.78187 1.20564 1.21155 1.19747 1.21246 0.93243 0.90873 1.51133 0.92370 1.19063 0.93515 0.90417 0.97772 1.21513 0.99415 0.91648 1.01958 1.30594 1.16417 1.15704 1.11308 1.05114 0.75341 0.74294 0.74154 1.93567 1.69965 1.85786 1.45423 1.93566 1.70028 1.85698 1.45259 1.58870 1.70737 1.43497 1.12495 1.21691 0.98015 0.93652 0.87131 1.23021 1.01179 0.98871 0.94905 1.22151 1.00744 0.94458 0.94445 0.87585 1.30381 1.23014 1.09758 1.11154 1.04844 0.76416 0.74239 0.74174 1.53162 1.35409 1.50087 1.54022 1.93629 1.86555 1.75617 1.38828 1.93643 1.49664 1.67582 1.83988 1.21892 0.93635 0.96040 0.87378 0.92866 0.96103 0.96084 0.91546 0.91587 0.85338 0.85411 0.90368 0.90939 0.88765 0.89395 0.83899 0.84059 0.76201 0.75033 0.89846 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 10 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 11 C -0.61 -9.27 6.18 37.16 0.23 -9.04 16 12 S 2.61 38.11 5.65 -107.50 -0.61 37.51 16 13 O -0.96 -16.34 17.61 -57.54 -1.01 -17.35 16 14 O -0.95 -16.60 17.60 -57.54 -1.01 -17.61 16 15 N -1.02 -11.11 3.62 -111.41 -0.40 -11.51 16 16 C 0.12 1.10 6.89 -3.06 -0.02 1.08 16 17 C -0.14 -0.99 5.66 -24.89 -0.14 -1.13 16 18 C -0.10 -0.63 3.00 -88.48 -0.27 -0.90 16 19 H 0.11 0.67 8.14 -51.92 -0.42 0.24 16 20 C -0.61 -2.06 5.58 37.16 0.21 -1.85 16 21 S 2.61 15.17 5.84 -107.50 -0.63 14.55 16 22 N -1.25 -3.28 9.43 60.35 0.57 -2.71 16 23 O -0.96 -8.76 17.26 -57.54 -0.99 -9.76 16 24 O -0.96 -9.87 18.10 -57.54 -1.04 -10.91 16 25 C 0.14 1.14 6.36 -2.53 -0.02 1.13 16 26 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 32 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.62 7.89 -51.93 -0.41 0.21 16 36 H 0.09 0.50 7.91 -51.93 -0.41 0.09 16 37 H 0.14 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.14 0.14 7.97 -51.93 -0.41 -0.28 16 39 H 0.41 -0.19 8.83 -34.47 -0.30 -0.49 16 40 H 0.42 0.92 8.96 -34.47 -0.31 0.61 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.54 8.04 -51.93 -0.42 0.13 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -41.47 372.84 -10.95 -52.42 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -6.46 Total: -4.98 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -0.69 Total: -25.95 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.90 Total: -40.11 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -4.06 Total: -55.62 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 53.29 SS G_CDS: -1.23 Total: 52.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -41.47 -10.95 -52.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561982920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.428 kcal (2) G-P(sol) polarization free energy of solvation -41.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds