Wall clock time and date at job start Sat Apr 11 2020 05:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48495 * 109.46931 * 270.00289 * 3 2 1 5 5 H 1.48500 * 109.46738 * 30.00531 * 3 2 1 6 6 H 1.48501 * 109.46755 * 150.00275 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47145 * 180.02562 * 11 10 9 13 13 O 1.42109 * 110.54012 * 291.61993 * 12 11 10 14 14 O 1.42095 * 110.54467 * 68.37106 * 12 11 10 15 15 N 1.65597 * 104.45043 * 179.97438 * 12 11 10 16 16 C 1.47016 * 125.65093 * 269.69234 * 15 12 11 17 17 C 1.54337 * 107.26901 * 178.84770 * 16 15 12 18 18 C 1.55155 * 103.01795 * 338.14183 * 17 16 15 19 19 H 1.09009 * 111.00170 * 277.22762 * 18 17 16 20 20 C 1.52999 * 111.00415 * 153.38094 * 18 17 16 21 21 S 1.81399 * 109.46986 * 72.80268 * 20 18 17 22 22 N 1.65601 * 104.44874 * 179.97438 * 21 20 18 23 23 O 1.42105 * 110.54441 * 291.62242 * 21 20 18 24 24 O 1.42095 * 110.54821 * 68.37337 * 21 20 18 25 25 C 1.47431 * 125.64756 * 89.99322 * 15 12 11 26 26 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 28 28 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 29 29 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 30 30 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 33 33 H 1.09004 * 109.87779 * 298.39196 * 16 15 12 34 34 H 1.08995 * 109.88426 * 59.55571 * 16 15 12 35 35 H 1.08997 * 110.85082 * 219.67302 * 17 16 15 36 36 H 1.09001 * 110.66877 * 96.51978 * 17 16 15 37 37 H 1.08994 * 109.47173 * 192.79704 * 20 18 17 38 38 H 1.08988 * 109.47003 * 312.80127 * 20 18 17 39 39 H 0.96996 * 119.99985 * 359.97438 * 22 21 20 40 40 H 0.97000 * 119.99707 * 179.97438 * 22 21 20 41 41 H 1.09002 * 110.36901 * 322.93705 * 25 15 12 42 42 H 1.09006 * 110.36530 * 85.14689 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 16 2.6588 -6.3660 -0.0004 13 8 3.3564 -6.4263 -1.2370 14 8 3.3547 -6.4264 1.2370 15 7 1.7084 -7.7221 -0.0005 16 6 1.2214 -8.4272 1.1941 17 6 0.3548 -9.6080 0.7077 18 6 -0.0552 -9.1740 -0.7244 19 1 -0.9156 -8.5051 -0.6986 20 6 -0.3362 -10.3916 -1.6071 21 16 -1.9079 -11.1489 -1.1101 22 7 -2.0875 -12.4380 -2.1340 23 8 -1.7924 -11.7375 0.1782 24 8 -2.9967 -10.2938 -1.4298 25 6 1.2157 -8.4259 -1.1986 26 1 -0.4850 0.8400 0.0004 27 1 0.6239 -2.5568 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6044 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 0.8531 -5.0451 0.8886 32 1 0.8537 -5.0446 -0.8913 33 1 2.0656 -8.7990 1.7749 34 1 0.6184 -7.7532 1.8024 35 1 -0.5244 -9.7304 1.3401 36 1 0.9389 -10.5279 0.6794 37 1 -0.3975 -10.0785 -2.6493 38 1 0.4690 -11.1171 -1.4925 39 1 -1.4122 -12.6216 -2.8056 40 1 -2.8680 -13.0094 -2.0621 41 1 0.9649 -7.7110 -1.9823 42 1 1.9631 -9.1339 -1.5569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001561982920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:57 Heat of formation + Delta-G solvation = -192.808166 kcal Electronic energy + Delta-G solvation = -25566.670901 eV Core-core repulsion = 21606.045392 eV Total energy + Delta-G solvation = -3960.625509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.78692 -38.25290 -37.98586 -37.10050 -36.90278 -36.48775 -34.18214 -33.96643 -33.92076 -30.58749 -29.67384 -27.69598 -25.64339 -23.50156 -22.28946 -21.84627 -20.33640 -19.99928 -18.83512 -18.61695 -18.54667 -18.11190 -17.51861 -17.19649 -16.88085 -16.58298 -16.46317 -15.94856 -15.80431 -15.09875 -14.77612 -14.52600 -14.49623 -14.13244 -14.04532 -13.57274 -13.39916 -13.27815 -13.21011 -13.12542 -13.07784 -13.01930 -12.95788 -12.88316 -12.76976 -12.64729 -12.45266 -12.17652 -12.11117 -11.78328 -11.72827 -11.44511 -11.39025 -11.20348 -11.11998 -10.59157 -9.96997 -8.24102 -6.35463 -0.85509 -0.66439 1.39321 1.40241 1.51640 1.63115 2.03836 2.38710 2.73965 2.76966 2.99791 3.09421 3.23657 3.43498 3.56611 3.68251 3.75006 3.89308 4.11444 4.27752 4.33485 4.36500 4.39747 4.57872 4.61285 4.68775 4.83565 4.91620 4.94865 4.98216 5.02027 5.09815 5.23459 5.33978 5.38735 5.43361 5.60386 5.77582 6.17651 6.42651 6.80293 7.34051 8.87455 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.002337 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.288125 B =11979.355883 C =12908.101769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.612 4.612 12 S 2.644 3.356 13 O -0.980 6.980 14 O -0.985 6.985 15 N -1.016 6.016 16 C 0.108 3.892 17 C -0.141 4.141 18 C -0.101 4.101 19 H 0.104 0.896 20 C -0.595 4.595 21 S 2.619 3.381 22 N -1.241 6.241 23 O -0.996 6.996 24 O -1.012 7.012 25 C 0.123 3.877 26 H 0.265 0.735 27 H 0.003 0.997 28 H 0.001 0.999 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.428 0.572 40 H 0.423 0.577 41 H 0.091 0.909 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 -29.546 -5.512 30.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.743 4.743 12 S 2.741 3.259 13 O -0.971 6.971 14 O -0.975 6.975 15 N -0.855 5.855 16 C -0.017 4.017 17 C -0.180 4.180 18 C -0.123 4.123 19 H 0.122 0.878 20 C -0.727 4.727 21 S 2.714 3.286 22 N -0.919 5.919 23 O -0.986 6.986 24 O -1.001 7.001 25 C -0.002 4.002 26 H 0.074 0.926 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.192 0.808 38 H 0.193 0.807 39 H 0.258 0.742 40 H 0.254 0.746 41 H 0.109 0.891 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.821 -28.985 -4.667 29.415 hybrid contribution -0.104 1.138 -0.506 1.249 sum -1.925 -27.848 -5.173 28.389 Atomic orbital electron populations 1.70075 1.07678 1.27934 1.51357 1.25959 0.95825 1.03319 0.94561 0.85458 0.78674 0.78412 0.78610 1.19614 1.20575 1.18874 1.21737 0.93752 0.92466 1.51072 0.92089 1.18963 0.94027 0.91908 0.95871 1.21313 0.98666 0.92434 1.02101 1.30585 1.16844 1.13877 1.12956 1.03915 0.74864 0.74300 0.72836 1.93529 1.70898 1.86323 1.46332 1.93524 1.71167 1.86296 1.46520 1.58514 1.70495 1.42117 1.14393 1.21948 0.98525 0.94542 0.86674 1.23088 1.01063 0.98565 0.95296 1.22189 0.99943 0.95562 0.94584 0.87765 1.30233 1.21355 1.08957 1.12153 1.04251 0.76669 0.74008 0.73670 1.52803 1.36093 1.49065 1.53924 1.93585 1.87316 1.76336 1.41318 1.93588 1.52912 1.69050 1.84568 1.22257 0.94801 0.96643 0.86520 0.92612 0.97855 0.98035 0.91613 0.91374 0.84018 0.83691 0.90466 0.90499 0.88613 0.87623 0.80787 0.80697 0.74237 0.74628 0.89055 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.11 -4.31 5.16 30.60 0.16 -4.15 16 11 C -0.61 -18.37 6.18 71.98 0.44 -17.92 16 12 S 2.64 74.52 5.65 -56.49 -0.32 74.20 16 13 O -0.98 -32.27 17.61 -127.65 -2.25 -34.52 16 14 O -0.98 -33.70 17.60 -127.65 -2.25 -35.94 16 15 N -1.02 -20.28 3.62 -506.40 -1.83 -22.11 16 16 C 0.11 1.81 6.89 86.73 0.60 2.40 16 17 C -0.14 -1.67 5.66 31.79 0.18 -1.49 16 18 C -0.10 -1.05 3.00 -9.40 -0.03 -1.07 16 19 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 20 C -0.59 -1.82 5.58 71.98 0.40 -1.42 16 21 S 2.62 26.41 5.84 -56.49 -0.33 26.08 16 22 N -1.24 -3.91 9.43 37.02 0.35 -3.56 16 23 O -1.00 -17.31 17.26 -127.65 -2.20 -19.52 16 24 O -1.01 -20.45 18.10 -127.65 -2.31 -22.76 16 25 C 0.12 1.69 6.36 86.85 0.55 2.24 16 26 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.13 7.89 -2.39 -0.02 1.11 16 36 H 0.11 0.87 7.91 -2.39 -0.02 0.85 16 37 H 0.17 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.18 -0.56 7.97 -2.40 -0.02 -0.57 16 39 H 0.43 -1.68 8.83 -96.75 -0.85 -2.54 16 40 H 0.42 1.23 8.96 -96.75 -0.87 0.37 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 0.98 8.04 -2.38 -0.02 0.96 16 Total: -1.00 -90.89 372.84 -6.36 -97.25 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -0.68 Total: 0.86 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 3.15 Total: -50.44 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -1.20 Total: -81.57 kcal Atomic # 8 Polarization: -103.74 SS G_CDS: -9.01 Total: -112.74 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 100.94 SS G_CDS: -0.65 Total: 100.29 kcal Total: -90.89 -6.36 -97.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561982920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.556 kcal (2) G-P(sol) polarization free energy of solvation -90.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds