Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48500 * 109.46854 * 269.99874 * 3 2 1 5 5 H 1.48498 * 109.47099 * 29.99901 * 3 2 1 6 6 H 1.48499 * 109.47002 * 149.99987 * 3 2 1 7 7 C 1.38803 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99946 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99925 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47094 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99830 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99957 * 179.97438 * 11 10 9 14 14 C 1.47019 * 125.64724 * 180.02562 * 13 11 10 15 15 C 1.54329 * 107.27149 * 178.97537 * 14 13 11 16 16 H 1.09001 * 110.71643 * 96.34662 * 15 14 13 17 17 N 1.46493 * 110.72008 * 219.44288 * 15 14 13 18 18 C 1.34779 * 119.99945 * 273.54603 * 17 15 14 19 19 O 1.21696 * 120.00128 * 359.97438 * 18 17 15 20 20 C 1.46665 * 119.99984 * 180.02562 * 18 17 15 21 21 C 1.36545 * 125.98674 * 179.97438 * 20 18 17 22 22 C 1.40357 * 106.70827 * 179.73780 * 21 20 18 23 23 C 1.35139 * 107.11426 * 359.97438 * 22 21 20 24 24 O 1.33930 * 108.76462 * 0.02562 * 23 22 21 25 25 C 1.55160 * 102.94220 * 337.80698 * 15 14 13 26 26 H 1.08995 * 111.00351 * 153.57481 * 25 15 14 27 27 O 1.42892 * 111.00113 * 277.42703 * 25 15 14 28 28 C 1.47425 * 125.64734 * 0.04189 * 13 11 10 29 29 H 0.96998 * 119.99771 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47383 * 60.00120 * 10 9 7 31 31 H 1.09001 * 109.47321 * 299.99847 * 10 9 7 32 32 H 1.09000 * 109.88598 * 59.56076 * 14 13 11 33 33 H 1.09000 * 109.88127 * 298.39175 * 14 13 11 34 34 H 0.96998 * 120.00157 * 93.54812 * 17 15 14 35 35 H 1.08000 * 126.64337 * 359.70047 * 21 20 18 36 36 H 1.08003 * 126.44764 * 179.97438 * 22 21 20 37 37 H 1.08004 * 125.61690 * 180.02562 * 23 22 21 38 38 H 0.96701 * 113.99765 * 179.97438 * 27 25 15 39 39 H 1.08994 * 110.36993 * 322.92732 * 28 13 11 40 40 H 1.09002 * 110.36509 * 85.14829 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.4664 -7.7641 0.0008 15 6 3.7728 -8.5853 -0.0261 16 1 4.0571 -8.8907 0.9809 17 7 3.6331 -9.7529 -0.8998 18 6 3.1229 -10.9016 -0.4131 19 8 2.7787 -10.9689 0.7522 20 6 2.9835 -12.0707 -1.2876 21 6 2.4854 -13.2892 -0.9248 22 6 2.5308 -14.1006 -2.0692 23 6 3.0476 -13.3511 -3.0679 24 8 3.3193 -12.1287 -2.5929 25 6 4.8019 -7.5822 -0.6109 26 1 5.8120 -7.8197 -0.2772 27 8 4.7306 -7.5486 -2.0376 28 6 4.3150 -6.2449 0.0006 29 1 -0.4850 0.8400 0.0004 30 1 3.1244 -3.7314 0.8905 31 1 3.1244 -3.7314 -0.8895 32 1 1.8690 -7.9889 -0.8828 33 1 1.9005 -7.9972 0.9027 34 1 3.9077 -9.6994 -1.8285 35 1 2.1266 -13.5736 0.0533 36 1 2.2126 -15.1304 -2.1386 37 1 3.2141 -13.6832 -4.0820 38 1 5.3553 -6.9352 -2.4483 39 1 4.6391 -5.4060 -0.6152 40 1 4.6878 -6.1337 1.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572974937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -120.153187 kcal Electronic energy + Delta-G solvation = -26261.272968 eV Core-core repulsion = 22168.354064 eV Total energy + Delta-G solvation = -4092.918904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.65470 -41.56725 -40.41813 -39.04557 -36.32216 -35.57895 -34.58941 -34.03941 -32.26780 -30.97018 -30.15303 -28.98866 -27.66229 -25.27519 -23.96854 -22.74654 -22.02686 -21.49704 -20.81275 -19.88260 -19.45993 -18.64802 -18.22359 -17.36136 -17.31687 -17.23114 -16.89078 -16.84198 -16.41272 -15.88608 -15.82617 -15.54610 -15.25779 -14.90820 -14.53755 -14.33300 -14.09185 -13.99901 -13.94011 -13.58515 -13.48435 -13.39496 -13.15704 -12.89351 -12.69868 -12.61031 -12.33668 -11.75318 -11.61020 -11.40939 -11.14458 -11.06295 -10.92112 -10.45401 -10.28438 -9.77522 -9.67573 -8.69701 -8.34757 -6.14203 -0.01737 1.18642 1.39642 1.42786 1.43269 1.50384 1.54437 1.61049 1.92369 2.02618 2.21723 2.26859 2.92833 2.99519 3.21449 3.34732 3.48216 3.69244 3.83112 3.90253 3.94781 4.04153 4.11403 4.22392 4.40464 4.47905 4.52880 4.58427 4.62290 4.63835 4.82993 4.89735 4.94550 5.10271 5.22192 5.38430 5.41410 5.81144 6.19463 6.28032 6.34555 6.79582 6.94010 7.04776 7.06156 8.74616 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.002026 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.981842 B =13813.809469 C =14108.096190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.002 2.998 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.087 0.913 9 S -0.158 6.158 10 C -0.114 4.114 11 C 0.544 3.456 12 O -0.571 6.571 13 N -0.609 5.609 14 C 0.100 3.900 15 C 0.148 3.852 16 H 0.128 0.872 17 N -0.691 5.691 18 C 0.601 3.399 19 O -0.556 6.556 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.236 4.236 23 C 0.012 3.988 24 O -0.170 6.170 25 C 0.105 3.895 26 H 0.136 0.864 27 O -0.570 6.570 28 C 0.058 3.942 29 H 0.271 0.729 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.423 0.577 35 H 0.158 0.842 36 H 0.183 0.817 37 H 0.255 0.745 38 H 0.408 0.592 39 H 0.104 0.896 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.579 -26.707 -6.740 33.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.691 4.691 8 H 0.105 0.895 9 S 0.069 5.931 10 C -0.265 4.265 11 C 0.332 3.668 12 O -0.450 6.450 13 N -0.344 5.344 14 C -0.024 4.024 15 C 0.042 3.958 16 H 0.146 0.854 17 N -0.343 5.343 18 C 0.389 3.611 19 O -0.437 6.437 20 C -0.164 4.164 21 C -0.146 4.146 22 C -0.254 4.254 23 C -0.057 4.057 24 O -0.066 6.066 25 C 0.045 3.955 26 H 0.154 0.846 27 O -0.380 6.380 28 C -0.064 4.064 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.261 0.739 35 H 0.176 0.824 36 H 0.200 0.800 37 H 0.271 0.729 38 H 0.261 0.739 39 H 0.122 0.878 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.067 -27.044 -5.979 32.020 hybrid contribution 1.266 1.474 -0.253 1.959 sum 17.333 -25.570 -6.232 31.514 Atomic orbital electron populations 1.70199 1.08104 1.28625 1.48002 1.26188 0.95984 1.03488 0.93728 0.84909 0.78216 0.75753 0.78818 1.19239 1.20503 1.17893 1.23188 0.95403 0.91589 1.58875 0.89528 1.85730 1.10763 0.99550 1.97058 1.23268 1.03375 0.93127 1.06775 1.19954 0.85391 0.86146 0.75260 1.90698 1.17496 1.85804 1.50979 1.48213 1.08228 1.04594 1.73395 1.22267 0.98384 0.80661 1.01131 1.22161 0.93085 0.84181 0.96350 0.85430 1.45544 1.63229 1.09676 1.15815 1.16840 0.76993 0.81608 0.85651 1.90882 1.51623 1.83880 1.17265 1.21770 1.13298 0.97661 0.83693 1.22282 0.98811 0.91795 1.01668 1.22235 1.07882 1.03329 0.91984 1.25414 0.98012 0.80560 1.01730 1.84070 1.65503 1.34462 1.22543 1.23195 0.99122 0.91079 0.82097 0.84635 1.86354 1.66108 1.67873 1.17660 1.23570 0.77998 1.00585 1.04275 0.92024 0.87031 0.86953 0.93158 0.92684 0.73855 0.82403 0.79954 0.72896 0.73914 0.87750 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 2 C 0.01 0.61 5.49 84.86 0.47 1.07 16 3 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 7 C -0.54 -30.83 9.50 67.96 0.65 -30.18 16 8 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 9 S -0.16 -8.94 20.57 -56.49 -1.16 -10.11 16 10 C -0.11 -4.60 5.16 71.24 0.37 -4.23 16 11 C 0.54 21.81 7.87 87.66 0.69 22.50 16 12 O -0.57 -29.13 16.19 -3.02 -0.05 -29.18 16 13 N -0.61 -17.41 3.33 -811.82 -2.70 -20.11 16 14 C 0.10 2.80 6.62 86.73 0.57 3.37 16 15 C 0.15 2.70 3.12 46.18 0.14 2.84 16 16 H 0.13 2.18 7.69 -2.39 -0.02 2.16 16 17 N -0.69 -12.98 5.08 -440.87 -2.24 -15.22 16 18 C 0.60 14.01 7.78 86.44 0.67 14.68 16 19 O -0.56 -16.51 16.59 -4.34 -0.07 -16.58 16 20 C -0.11 -2.25 7.13 24.08 0.17 -2.07 16 21 C -0.12 -2.18 10.62 22.39 0.24 -1.95 16 22 C -0.24 -2.56 10.87 22.07 0.24 -2.32 16 23 C 0.01 0.11 12.08 67.11 0.81 0.92 16 24 O -0.17 -2.65 10.40 -4.95 -0.05 -2.70 16 25 C 0.11 1.14 4.28 31.98 0.14 1.28 16 26 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 27 O -0.57 -6.54 12.23 -148.98 -1.82 -8.36 16 28 C 0.06 0.90 6.42 86.85 0.56 1.45 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 31 H 0.11 3.96 7.85 -2.39 -0.02 3.94 16 32 H 0.05 1.63 8.03 -2.39 -0.02 1.61 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.42 6.92 7.32 -92.71 -0.68 6.24 16 35 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 37 H 0.26 -0.32 8.06 -2.91 -0.02 -0.35 16 38 H 0.41 1.23 9.12 -74.06 -0.68 0.55 16 39 H 0.10 1.37 7.48 -2.39 -0.02 1.35 16 40 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -90.87 365.78 -0.32 -91.18 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -0.25 Total: 14.67 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.71 Total: 7.36 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -4.65 Total: -91.54 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -1.99 Total: -56.82 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.11 kcal Total: -90.87 -0.32 -91.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572974937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.970 kcal (2) G-P(sol) polarization free energy of solvation -90.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds