Wall clock time and date at job start Sat Apr 11 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32513 * 124.58345 * 2 1 4 4 C 1.44678 * 113.16909 * 179.78781 * 3 2 1 5 5 C 1.46439 * 123.61176 * 180.25996 * 4 3 2 6 6 O 1.21642 * 119.99945 * 180.19269 * 5 4 3 7 7 O 1.34882 * 120.00091 * 0.19584 * 5 4 3 8 8 C 1.37187 * 112.78000 * 0.43020 * 4 3 2 9 9 N 1.38610 * 124.66238 * 179.84209 * 8 4 3 10 10 C 1.34773 * 119.99938 * 179.72552 * 9 8 4 11 11 O 1.21282 * 120.00418 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00164 * 180.02562 * 10 9 8 13 13 N 1.46904 * 109.47392 * 180.02562 * 12 10 9 14 14 C 1.47960 * 110.99975 * 190.00152 * 13 12 10 15 15 C 1.53940 * 86.18020 * 222.41827 * 14 13 12 16 16 O 1.42900 * 113.73337 * 269.26005 * 15 14 13 17 17 C 1.50694 * 113.73364 * 138.08016 * 15 14 13 18 18 H 1.08000 * 120.00563 * 1.89939 * 17 15 14 19 19 C 1.37885 * 119.99902 * 181.90102 * 17 15 14 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.48189 * 111.06803 * 90.56563 * 13 12 10 26 26 S 1.70441 * 110.67273 * 359.58740 * 8 4 3 27 27 H 1.08995 * 109.47097 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46709 * 299.99467 * 1 2 3 29 29 H 1.08997 * 109.47460 * 59.99629 * 1 2 3 30 30 H 1.07997 * 123.41279 * 0.03194 * 3 2 1 31 31 H 0.96700 * 117.00423 * 180.02562 * 7 5 4 32 32 H 0.97002 * 120.00199 * 359.73839 * 9 8 4 33 33 H 1.09003 * 109.46888 * 60.00332 * 12 10 9 34 34 H 1.09005 * 109.47315 * 300.00654 * 12 10 9 35 35 H 1.09000 * 113.75922 * 108.10132 * 14 13 12 36 36 H 1.08996 * 113.85941 * 336.74802 * 14 13 12 37 37 H 0.96699 * 113.99865 * 178.10203 * 16 15 14 38 38 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 39 39 H 1.08996 * 113.76245 * 23.24297 * 25 13 12 40 40 H 1.08999 * 113.82580 * 251.80952 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2591 1.0910 0.0000 4 6 3.6773 0.8047 0.0049 5 6 4.7132 1.8397 0.0114 6 8 5.8881 1.5243 0.0118 7 8 4.3647 3.1427 0.0171 8 6 3.9477 -0.5403 -0.0009 9 7 5.2208 -1.0885 -0.0012 10 6 5.3781 -2.4270 -0.0016 11 8 4.4058 -3.1519 -0.0022 12 6 6.7622 -3.0230 -0.0013 13 7 6.6642 -4.4888 -0.0025 14 6 7.9861 -5.1087 0.2377 15 6 7.6047 -6.1065 -0.8708 16 8 6.9436 -7.2777 -0.3879 17 6 8.7324 -6.4180 -1.8207 18 1 9.7058 -5.9763 -1.6667 19 6 8.5214 -7.2670 -2.8865 20 7 7.3361 -7.8052 -3.0738 21 14 9.9191 -7.6525 -4.0643 22 1 9.4374 -8.5837 -5.1161 23 1 10.3953 -6.3957 -4.6956 24 1 11.0356 -8.2852 -3.3172 25 6 6.6431 -5.0201 -1.3857 26 16 2.5029 -1.4445 -0.0007 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8545 2.0923 0.0005 31 1 5.0836 3.7894 0.0209 32 1 5.9985 -0.5087 -0.0008 33 1 7.2988 -2.6951 0.8891 34 1 7.2996 -2.6944 -0.8909 35 1 8.0851 -5.5639 1.2231 36 1 8.8278 -4.4662 -0.0204 37 1 6.6764 -7.8937 -1.0838 38 1 7.1876 -8.4022 -3.8238 39 1 7.0901 -4.3504 -2.1203 40 1 5.6712 -5.4047 -1.6948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574127197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:08 Heat of formation + Delta-G solvation = -103.634231 kcal Electronic energy + Delta-G solvation = -26760.570592 eV Core-core repulsion = 22668.368003 eV Total energy + Delta-G solvation = -4092.202589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79427 -40.04054 -38.75447 -37.53290 -36.29087 -34.90601 -34.28997 -32.11558 -31.65693 -29.80217 -26.85906 -26.17420 -25.42049 -25.16800 -22.88578 -21.57584 -20.87146 -20.14802 -18.76007 -18.49308 -17.64076 -17.40724 -17.05491 -16.08311 -15.85214 -15.65957 -15.62881 -15.08722 -14.88532 -14.43256 -14.22572 -13.93055 -13.86563 -13.80606 -13.53867 -12.87029 -12.47459 -12.38942 -12.30469 -12.08298 -12.03045 -11.78229 -11.59441 -11.28947 -11.10783 -10.88311 -10.81947 -10.74757 -10.71344 -10.43391 -10.08755 -9.73295 -9.37916 -8.67964 -8.63141 -8.32282 -8.19310 -7.89602 -6.28995 -4.39791 0.49958 1.08301 1.63829 1.83387 2.43955 2.71665 2.97227 3.02073 3.18810 3.24921 3.26754 4.22559 4.55152 4.62340 4.75611 4.82977 4.97540 5.05577 5.24322 5.27572 5.35935 5.44224 5.52991 5.67814 5.77815 5.82876 5.92227 6.00034 6.19274 6.21739 6.24938 6.26589 6.59830 6.98970 7.01330 7.06305 7.28772 7.67993 7.72128 7.76450 7.88998 7.95516 8.61905 9.30554 9.59874 10.76967 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.002630 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.598712 B =10642.329292 C =11363.934677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.271 4.271 3 C -0.070 4.070 4 C -0.242 4.242 5 C 0.558 3.442 6 O -0.538 6.538 7 O -0.510 6.510 8 C 0.098 3.902 9 N -0.632 5.632 10 C 0.506 3.494 11 O -0.470 6.470 12 C 0.005 3.995 13 N -0.460 5.460 14 C 0.009 3.991 15 C 0.248 3.752 16 O -0.570 6.570 17 C -0.542 4.542 18 H 0.065 0.935 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.904 3.096 22 H -0.285 1.285 23 H -0.276 1.276 24 H -0.274 1.274 25 C -0.011 4.011 26 S 0.324 5.676 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.149 0.851 31 H 0.412 0.588 32 H 0.430 0.570 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.389 0.611 38 H 0.272 0.728 39 H 0.060 0.940 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 19.300 5.024 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.387 4.387 3 C -0.098 4.098 4 C -0.260 4.260 5 C 0.404 3.596 6 O -0.431 6.431 7 O -0.321 6.321 8 C -0.124 4.124 9 N -0.282 5.282 10 C 0.293 3.707 11 O -0.342 6.342 12 C -0.127 4.127 13 N -0.183 5.183 14 C -0.119 4.119 15 C 0.206 3.794 16 O -0.381 6.381 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.201 1.201 24 H -0.199 1.199 25 C -0.140 4.140 26 S 0.585 5.415 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.166 0.834 31 H 0.270 0.730 32 H 0.274 0.726 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.243 0.757 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.067 16.853 5.919 21.012 hybrid contribution 2.641 2.431 -1.812 4.021 sum -8.426 19.284 4.107 21.441 Atomic orbital electron populations 1.20216 0.87583 1.02796 1.02676 1.24901 1.01347 0.99115 1.13376 1.20658 0.89363 0.99494 1.00267 1.18723 0.93395 0.88617 1.25268 1.19880 0.86866 0.81492 0.71316 1.90766 1.20340 1.82608 1.49385 1.84601 1.44436 1.16982 1.86060 1.22291 0.93761 0.96068 1.00244 1.43668 1.06135 1.08678 1.69728 1.21581 0.93790 0.80195 0.75095 1.90623 1.40463 1.58358 1.44736 1.22574 0.91121 0.95266 1.03700 1.68543 1.27253 1.00551 1.21927 1.24213 0.89601 0.96522 1.01545 1.19678 0.88683 0.82826 0.88228 1.86049 1.79106 1.33556 1.39366 1.21581 0.97356 1.29043 1.10012 0.91637 1.25067 0.95957 0.94751 0.97305 1.69424 1.21462 1.31412 1.31151 0.86469 0.81968 0.78362 0.80127 1.21000 1.20094 1.19929 1.24890 1.02219 0.99072 0.87833 1.84625 0.87399 1.01567 1.67924 0.91485 0.90876 0.90865 0.83357 0.73044 0.72639 0.87935 0.90392 0.90140 0.91353 0.75708 0.91788 0.92181 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.34 36.00 0.37 -0.17 16 2 C -0.27 -2.80 6.42 -36.22 -0.23 -3.03 16 3 C -0.07 -0.74 9.97 -38.96 -0.39 -1.13 16 4 C -0.24 -3.01 6.00 -104.44 -0.63 -3.64 16 5 C 0.56 6.58 8.28 34.03 0.28 6.86 16 6 O -0.54 -7.28 15.23 -19.38 -0.30 -7.58 16 7 O -0.51 -4.29 13.16 -40.99 -0.54 -4.83 16 8 C 0.10 1.36 6.98 -14.87 -0.10 1.25 16 9 N -0.63 -8.93 5.33 -11.61 -0.06 -8.99 16 10 C 0.51 8.28 7.83 -10.99 -0.09 8.19 16 11 O -0.47 -8.99 13.85 5.56 0.08 -8.91 16 12 C 0.01 0.08 5.28 -4.97 -0.03 0.06 16 13 N -0.46 -9.46 5.65 -239.46 -1.35 -10.81 16 14 C 0.01 0.20 7.34 -2.76 -0.02 0.18 16 15 C 0.25 6.15 1.40 -90.83 -0.13 6.03 16 16 O -0.57 -15.35 13.48 -35.23 -0.48 -15.83 16 17 C -0.54 -14.12 8.61 -34.44 -0.30 -14.42 16 18 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.07 1.87 5.40 -17.82 -0.10 1.77 16 20 N -0.89 -23.81 11.20 55.43 0.62 -23.19 16 21 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.01 -0.26 7.36 -2.63 -0.02 -0.28 16 26 S 0.32 4.18 19.92 -107.50 -2.14 2.04 16 27 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.41 1.57 9.11 45.56 0.42 1.99 16 32 H 0.43 5.61 6.17 -40.82 -0.25 5.36 16 33 H 0.10 1.37 8.08 -51.93 -0.42 0.95 16 34 H 0.08 1.16 7.39 -51.93 -0.38 0.78 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.28 7.88 -51.93 -0.41 0.87 16 37 H 0.39 10.65 6.60 45.56 0.30 10.95 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.06 1.34 7.44 -51.93 -0.39 0.95 16 40 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -31.46 357.45 -8.39 -39.85 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -3.22 Total: 16.11 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.37 Total: 1.67 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.79 Total: -43.00 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.23 Total: -37.15 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -2.14 Total: 2.04 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.46 -8.39 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574127197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.783 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds