Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31369 * 1 3 3 Si 1.86805 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47058 * 270.00062 * 3 2 1 5 5 H 1.48494 * 109.47320 * 30.00152 * 3 2 1 6 6 H 1.48498 * 109.46884 * 150.00252 * 3 2 1 7 7 C 1.39033 * 120.00402 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00027 * 202.35498 * 7 2 1 9 9 N 1.36894 * 119.99805 * 22.34920 * 7 2 1 10 10 C 1.46501 * 119.99821 * 216.37143 * 9 7 2 11 11 C 1.50702 * 109.47133 * 54.14997 * 10 9 7 12 12 C 1.35351 * 126.90997 * 264.68324 * 11 10 9 13 13 N 1.33770 * 106.49592 * 179.90498 * 12 11 10 14 14 N 1.28637 * 108.88609 * 0.36679 * 13 12 11 15 15 N 1.28719 * 110.17659 * 359.76700 * 14 13 12 16 16 H 0.97001 * 125.86509 * 180.02562 * 15 14 13 17 17 C 1.34772 * 119.99887 * 36.64800 * 9 7 2 18 18 O 1.21609 * 119.99970 * 3.10623 * 17 9 7 19 19 C 1.47582 * 120.00246 * 183.10005 * 17 9 7 20 20 C 1.39722 * 120.16884 * 39.80929 * 19 17 9 21 21 C 1.37838 * 119.87203 * 179.72110 * 20 19 17 22 22 C 1.38476 * 120.22075 * 0.55568 * 21 20 19 23 23 C 1.38217 * 120.35014 * 359.72242 * 22 21 20 24 24 C 1.50710 * 119.93758 * 180.02562 * 23 22 21 25 25 F 1.39903 * 109.46684 * 29.97734 * 24 23 22 26 26 F 1.39892 * 109.47349 * 149.97649 * 24 23 22 27 27 C 1.38293 * 120.12690 * 359.97438 * 23 22 21 28 28 F 1.35103 * 120.11373 * 179.97438 * 27 23 22 29 29 H 0.96996 * 120.00482 * 4.92962 * 1 2 3 30 30 H 1.09003 * 109.46767 * 174.14271 * 10 9 7 31 31 H 1.08997 * 109.47056 * 294.14549 * 10 9 7 32 32 H 1.08001 * 126.75063 * 0.03408 * 12 11 10 33 33 H 1.08004 * 120.06556 * 0.02562 * 20 19 17 34 34 H 1.07998 * 119.89122 * 180.27786 * 21 20 19 35 35 H 1.07998 * 119.82215 * 179.69699 * 22 21 20 36 36 H 1.09000 * 109.46760 * 269.97710 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4451 2.6527 0.7000 6 1 3.5452 1.4402 0.7000 7 6 2.0089 -1.2040 -0.0005 8 1 3.0280 -1.2393 0.3552 9 7 1.4016 -2.3448 -0.4519 10 6 1.6805 -3.6287 0.1965 11 6 1.4191 -3.5115 1.6760 12 6 2.3272 -3.2430 2.6431 13 7 1.6572 -3.2320 3.8008 14 7 0.4178 -3.4850 3.5670 15 7 0.2306 -3.6593 2.3055 16 1 -0.6171 -3.8616 1.8794 17 6 0.5516 -2.2878 -1.4961 18 8 0.3673 -1.2333 -2.0732 19 6 -0.1556 -3.5049 -1.9394 20 6 -0.6549 -4.4089 -0.9983 21 6 -1.3194 -5.5409 -1.4191 22 6 -1.4836 -5.7907 -2.7712 23 6 -0.9883 -4.9056 -3.7101 24 6 -1.1727 -5.1864 -5.1793 25 9 -2.3538 -5.9113 -5.3708 26 9 -1.2488 -3.9775 -5.8792 27 6 -0.3247 -3.7622 -3.3040 28 9 0.1598 -2.8975 -4.2220 29 1 -0.4851 0.8369 -0.0722 30 1 1.0339 -4.3974 -0.2269 31 1 2.7233 -3.8998 0.0320 32 1 3.3845 -3.0695 2.5066 33 1 -0.5248 -4.2187 0.0568 34 1 -1.7095 -6.2376 -0.6918 35 1 -2.0010 -6.6821 -3.0937 36 1 -0.3265 -5.7666 -5.5472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577706826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = -19.523914 kcal Electronic energy + Delta-G solvation = -30076.299849 eV Core-core repulsion = 25342.736617 eV Total energy + Delta-G solvation = -4733.563232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.20322 -48.55068 -47.05676 -42.82218 -39.71292 -37.86469 -34.90735 -33.09626 -32.61105 -31.87258 -30.81092 -30.37031 -26.74479 -26.03546 -25.25772 -23.13212 -22.60070 -21.93694 -21.44161 -20.06813 -18.10618 -17.88779 -17.62474 -17.42722 -17.13094 -16.48084 -16.00627 -15.85367 -15.47283 -15.30225 -15.00800 -14.81336 -14.21190 -14.20073 -13.90861 -13.77252 -13.45655 -13.32778 -13.20997 -12.86480 -12.84485 -12.52620 -12.08350 -11.86700 -11.70403 -11.46298 -11.32331 -10.99359 -10.86368 -10.73175 -10.51068 -10.33837 -10.10276 -9.17485 -9.09484 -8.83688 -8.68819 -8.38860 -7.47624 -6.36692 -4.06518 0.78132 0.99666 2.00602 3.00906 3.12349 3.15335 3.26778 3.31820 3.34909 3.52578 3.96106 4.01742 4.11225 4.25489 4.42117 4.60994 4.75054 4.77585 4.87325 4.91179 4.99173 5.10384 5.29914 5.31533 5.36097 5.61601 5.79647 5.83418 5.91546 5.96801 6.02750 6.15316 6.17727 6.58977 6.67664 7.20962 7.37920 7.91098 8.67845 8.83077 8.88880 9.31641 9.89477 10.70289 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.004710 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.532741 B = 5943.445003 C = 7755.390917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.090 0.910 9 N -0.434 5.434 10 C 0.144 3.856 11 C 0.014 3.986 12 C -0.034 4.034 13 N -0.273 5.273 14 N -0.093 5.093 15 N -0.386 5.386 16 H 0.439 0.561 17 C 0.494 3.506 18 O -0.505 6.505 19 C -0.124 4.124 20 C -0.068 4.068 21 C -0.136 4.136 22 C -0.062 4.062 23 C -0.213 4.213 24 C 0.319 3.681 25 F -0.199 7.199 26 F -0.191 7.191 27 C 0.168 3.832 28 F -0.109 7.109 29 H 0.269 0.731 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.185 0.815 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 -15.154 -4.745 15.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.108 0.892 9 N -0.155 5.155 10 C 0.018 3.982 11 C -0.121 4.121 12 C -0.192 4.192 13 N -0.140 5.140 14 N -0.074 5.074 15 N -0.107 5.107 16 H 0.284 0.716 17 C 0.281 3.719 18 O -0.381 6.381 19 C -0.129 4.129 20 C -0.087 4.087 21 C -0.154 4.154 22 C -0.081 4.081 23 C -0.215 4.215 24 C 0.266 3.734 25 F -0.180 7.180 26 F -0.172 7.172 27 C 0.147 3.853 28 F -0.087 7.087 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.202 0.798 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.698 -14.331 -3.557 14.863 hybrid contribution 0.111 0.980 -1.457 1.760 sum -1.587 -13.350 -5.014 14.349 Atomic orbital electron populations 1.69849 1.06808 1.28631 1.39333 1.25120 0.94735 0.99670 0.94638 0.86203 0.79546 0.82054 0.78468 1.20114 1.21267 1.19501 1.19065 0.96758 0.85029 1.45494 0.89240 1.43304 1.41724 1.05370 1.25137 1.20672 1.02719 0.90478 0.84309 1.22517 0.85662 1.06054 0.97863 1.23204 1.01477 1.06496 0.88001 1.74967 0.97729 1.16085 1.25236 1.78145 1.13468 1.19472 0.96281 1.44993 1.10720 1.48183 1.06768 0.71607 1.17345 0.85007 0.86719 0.82816 1.90705 1.63115 1.29389 1.54855 1.20719 1.02041 0.98409 0.91700 1.21274 0.95465 0.93140 0.98871 1.21067 1.00501 0.98186 0.95693 1.20773 0.96841 0.98280 0.92185 1.20418 1.07290 0.98097 0.95703 1.20166 0.85914 0.79238 0.88121 1.92988 1.51419 1.77725 1.95890 1.93067 1.96815 1.47013 1.80328 1.17243 0.95112 0.86933 0.85981 1.91611 1.84786 1.67857 1.64437 0.92074 0.88934 0.89572 0.79760 0.85642 0.84520 0.84232 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.84 11.42 55.50 0.63 -22.21 16 2 C 0.07 1.88 4.25 -17.45 -0.07 1.81 16 3 Si 0.91 21.26 29.61 -169.99 -5.03 16.22 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.34 -8.35 8.60 -15.00 -0.13 -8.48 16 8 H 0.09 2.11 7.93 -52.49 -0.42 1.69 16 9 N -0.43 -9.47 2.76 -117.26 -0.32 -9.80 16 10 C 0.14 2.31 5.59 -5.19 -0.03 2.29 16 11 C 0.01 0.23 5.96 -82.09 -0.49 -0.26 16 12 C -0.03 -0.58 11.97 -17.74 -0.21 -0.80 16 13 N -0.27 -5.16 12.41 30.23 0.38 -4.79 16 14 N -0.09 -1.71 13.38 60.35 0.81 -0.90 16 15 N -0.39 -6.20 6.79 33.54 0.23 -5.97 16 16 H 0.44 5.82 7.20 -190.40 -1.37 4.45 16 17 C 0.49 11.55 6.43 -12.45 -0.08 11.47 16 18 O -0.50 -14.29 13.62 5.27 0.07 -14.22 16 19 C -0.12 -2.27 5.30 -104.91 -0.56 -2.82 16 20 C -0.07 -0.95 7.32 -39.17 -0.29 -1.24 16 21 C -0.14 -1.43 10.03 -39.64 -0.40 -1.83 16 22 C -0.06 -0.66 9.39 -39.50 -0.37 -1.03 16 23 C -0.21 -2.83 5.74 -104.60 -0.60 -3.43 16 24 C 0.32 3.69 5.59 36.01 0.20 3.89 16 25 F -0.20 -2.29 16.47 2.25 0.04 -2.25 16 26 F -0.19 -2.85 15.49 2.25 0.03 -2.82 16 27 C 0.17 2.93 7.08 -38.94 -0.28 2.65 16 28 F -0.11 -2.18 14.41 2.25 0.03 -2.15 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.09 1.26 3.62 -51.93 -0.19 1.07 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.19 2.66 8.06 -52.49 -0.42 2.24 16 33 H 0.13 1.64 4.08 -52.48 -0.21 1.43 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.14 1.09 7.59 -52.49 -0.40 0.69 16 36 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -34.44 322.05 -5.00 -39.43 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -3.41 Total: 2.37 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -3.30 Total: 2.22 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 1.72 Total: -43.67 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.07 Total: -14.22 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.10 Total: -7.22 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.44 -5.00 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.908 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds