Wall clock time and date at job start Sat Apr 11 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47019 * 125.65306 * 0.02625 * 13 11 10 15 15 C 1.54318 * 107.27169 * 181.02409 * 14 13 11 16 16 C 1.55151 * 102.94366 * 22.18982 * 15 14 13 17 17 H 1.08998 * 111.00363 * 82.57589 * 16 15 14 18 18 N 1.46504 * 111.00419 * 206.42514 * 16 15 14 19 19 C 1.34780 * 119.99761 * 205.00154 * 18 16 15 20 20 O 1.21275 * 120.00375 * 359.97438 * 19 18 16 21 21 C 1.50709 * 119.99800 * 180.02562 * 19 18 16 22 22 C 1.52996 * 109.47029 * 179.97438 * 21 19 18 23 23 F 1.39905 * 109.46778 * 60.00496 * 22 21 19 24 24 F 1.39898 * 109.47182 * 179.97438 * 22 21 19 25 25 F 1.39894 * 109.47496 * 300.00117 * 22 21 19 26 26 C 1.47431 * 125.64400 * 179.71740 * 13 11 10 27 27 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 29 29 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 30 30 H 1.09006 * 109.87668 * 300.43954 * 14 13 11 31 31 H 1.09001 * 109.88477 * 61.44830 * 14 13 11 32 32 H 1.09004 * 110.72282 * 140.55157 * 15 14 13 33 33 H 1.09006 * 110.72028 * 263.82233 * 15 14 13 34 34 H 0.96995 * 120.00374 * 24.99797 * 18 16 15 35 35 H 1.09001 * 109.46527 * 300.00018 * 21 19 18 36 36 H 1.08999 * 109.46999 * 59.99496 * 21 19 18 37 37 H 1.09002 * 110.36093 * 274.74571 * 26 13 11 38 38 H 1.09002 * 110.36515 * 37.06708 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3110 -6.2452 0.0019 15 6 4.8664 -7.6847 -0.0245 16 6 3.6851 -8.5022 -0.6105 17 1 3.6715 -8.4439 -1.6988 18 7 3.7375 -9.8960 -0.1621 19 6 3.1594 -10.8637 -0.9008 20 8 2.5954 -10.5808 -1.9365 21 6 3.2128 -12.2974 -0.4392 22 6 2.4864 -13.1862 -1.4507 23 9 3.1072 -13.0750 -2.6995 24 9 2.5364 -14.5171 -1.0225 25 9 1.1520 -12.7794 -1.5554 26 6 2.4655 -7.7680 0.0057 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7314 -0.8895 29 1 3.1245 -3.7314 0.8906 30 1 4.6472 -5.7019 -0.8813 31 1 4.6474 -5.7321 0.9029 32 1 5.7396 -7.7494 -0.6737 33 1 5.1077 -8.0236 0.9830 34 1 4.1882 -10.1223 0.6665 35 1 4.2525 -12.6141 -0.3573 36 1 2.7288 -12.3841 0.5336 37 1 2.2895 -8.1098 1.0257 38 1 1.5781 -7.9270 -0.6070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577892265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:19 Heat of formation + Delta-G solvation = -221.742245 kcal Electronic energy + Delta-G solvation = -26525.463224 eV Core-core repulsion = 21886.282347 eV Total energy + Delta-G solvation = -4639.180877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.44731 -47.99325 -47.85486 -40.64158 -39.48969 -37.39048 -34.70000 -32.60454 -32.43892 -30.92259 -29.75923 -27.95974 -25.51625 -24.75687 -23.46593 -21.70667 -21.22126 -19.47032 -19.17270 -18.91998 -18.11131 -17.71912 -17.31463 -16.82505 -16.54025 -15.97883 -15.37227 -15.10401 -14.82980 -14.81343 -14.66965 -14.36317 -14.28950 -14.13234 -14.03678 -14.00448 -13.83389 -13.71166 -13.36151 -12.94118 -12.73117 -12.58337 -12.45352 -12.10294 -11.99317 -11.81013 -11.24945 -11.05647 -11.04748 -10.78999 -10.61595 -9.86229 -9.75109 -9.43979 -9.06990 -8.59677 -8.25443 -6.51930 -6.22407 -3.93595 1.90684 1.98604 2.47802 2.90764 3.01538 3.22525 3.23899 3.25321 3.28347 3.55157 3.56614 3.64704 4.01226 4.18219 4.21273 4.27111 4.45901 4.48297 4.54451 4.84189 4.97538 5.01264 5.12492 5.30025 5.42427 5.52039 5.55974 5.60220 5.73218 5.87293 5.88636 6.10250 6.31992 6.76708 7.51018 7.56497 7.58617 8.33815 8.49783 9.22454 10.84940 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.033083 B = 0.001872 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.155355 B =14955.679921 C =15434.785772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.511 6.511 13 N -0.626 5.626 14 C 0.104 3.896 15 C -0.136 4.136 16 C 0.131 3.869 17 H 0.112 0.888 18 N -0.713 5.713 19 C 0.518 3.482 20 O -0.510 6.510 21 C -0.196 4.196 22 C 0.472 3.528 23 F -0.173 7.173 24 F -0.183 7.183 25 F -0.171 7.171 26 C 0.098 3.902 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.405 0.595 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.713 -27.132 2.467 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.385 6.385 13 N -0.365 5.365 14 C -0.020 4.020 15 C -0.174 4.174 16 C 0.025 3.975 17 H 0.130 0.870 18 N -0.365 5.365 19 C 0.302 3.698 20 O -0.384 6.384 21 C -0.237 4.237 22 C 0.417 3.583 23 F -0.154 7.154 24 F -0.164 7.164 25 F -0.152 7.152 26 C -0.026 4.026 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.241 0.759 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.086 0.914 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.257 -27.043 1.669 29.737 hybrid contribution 2.201 0.984 0.412 2.446 sum 14.457 -26.059 2.081 29.873 Atomic orbital electron populations 1.70010 1.05955 1.27598 1.46656 1.25002 0.95040 0.99038 0.94524 0.86216 0.79229 0.81217 0.78783 1.20803 1.19941 1.19927 1.22809 0.94845 0.91581 1.59182 0.90957 1.85443 1.04854 0.96338 1.96723 1.23505 1.06540 0.94784 1.04847 1.20070 0.85666 0.85412 0.75079 1.90724 1.14922 1.85023 1.47782 1.48399 1.06462 1.05410 1.76232 1.21962 0.80604 0.96557 1.02877 1.22929 0.97768 0.94349 1.02359 1.22246 0.95103 0.79095 1.01023 0.86974 1.45672 1.57737 1.06645 1.26460 1.19822 0.79128 0.86316 0.84557 1.90890 1.41483 1.82919 1.23093 1.22968 1.05982 0.93597 1.01141 1.19679 0.78296 0.78796 0.81521 1.93236 1.82239 1.95794 1.44176 1.93208 1.96362 1.37135 1.89720 1.93252 1.35576 1.90083 1.96304 1.22511 0.98133 0.80948 1.01057 0.92096 0.89192 0.89236 0.90726 0.90684 0.89058 0.89814 0.75938 0.84208 0.84119 0.91400 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -2.95 5.35 36.01 0.19 -2.76 16 11 C 0.55 10.54 7.87 -10.98 -0.09 10.45 16 12 O -0.51 -12.01 16.12 5.56 0.09 -11.92 16 13 N -0.63 -8.63 3.33 -170.38 -0.57 -9.19 16 14 C 0.10 0.94 6.48 -3.07 -0.02 0.92 16 15 C -0.14 -0.75 6.59 -24.90 -0.16 -0.91 16 16 C 0.13 1.03 3.44 -65.67 -0.23 0.81 16 17 H 0.11 1.11 7.54 -51.93 -0.39 0.72 16 18 N -0.71 -3.72 5.19 -51.62 -0.27 -3.98 16 19 C 0.52 3.87 7.60 -10.98 -0.08 3.79 16 20 O -0.51 -6.47 14.47 5.56 0.08 -6.39 16 21 C -0.20 -0.74 5.75 -27.88 -0.16 -0.90 16 22 C 0.47 3.62 2.89 37.16 0.11 3.73 16 23 F -0.17 -1.71 16.40 2.25 0.04 -1.67 16 24 F -0.18 -1.30 17.32 2.25 0.04 -1.26 16 25 F -0.17 -1.80 16.40 2.25 0.04 -1.76 16 26 C 0.10 1.14 6.61 -2.41 -0.02 1.13 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.30 8.00 -51.93 -0.42 -0.12 16 34 H 0.41 0.61 8.57 -40.82 -0.35 0.26 16 35 H 0.14 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.14 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -38.69 354.87 -6.46 -45.15 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: -4.50 Total: -4.66 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.26 Total: 3.35 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: -0.10 Total: -38.60 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.17 Total: -18.31 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.11 Total: -4.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.69 -6.46 -45.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577892265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.592 kcal (2) G-P(sol) polarization free energy of solvation -38.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds