Wall clock time and date at job start Sat Apr 11 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47019 * 125.65306 * 0.02625 * 13 11 10 15 15 C 1.54318 * 107.27169 * 181.02409 * 14 13 11 16 16 C 1.55151 * 102.94366 * 22.18982 * 15 14 13 17 17 H 1.08998 * 111.00363 * 82.57589 * 16 15 14 18 18 N 1.46504 * 111.00419 * 206.42514 * 16 15 14 19 19 C 1.34780 * 119.99761 * 205.00154 * 18 16 15 20 20 O 1.21275 * 120.00375 * 359.97438 * 19 18 16 21 21 C 1.50709 * 119.99800 * 180.02562 * 19 18 16 22 22 C 1.52996 * 109.47029 * 179.97438 * 21 19 18 23 23 F 1.39905 * 109.46778 * 60.00496 * 22 21 19 24 24 F 1.39898 * 109.47182 * 179.97438 * 22 21 19 25 25 F 1.39894 * 109.47496 * 300.00117 * 22 21 19 26 26 C 1.47431 * 125.64400 * 179.71740 * 13 11 10 27 27 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 29 29 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 30 30 H 1.09006 * 109.87668 * 300.43954 * 14 13 11 31 31 H 1.09001 * 109.88477 * 61.44830 * 14 13 11 32 32 H 1.09004 * 110.72282 * 140.55157 * 15 14 13 33 33 H 1.09006 * 110.72028 * 263.82233 * 15 14 13 34 34 H 0.96995 * 120.00374 * 24.99797 * 18 16 15 35 35 H 1.09001 * 109.46527 * 300.00018 * 21 19 18 36 36 H 1.08999 * 109.46999 * 59.99496 * 21 19 18 37 37 H 1.09002 * 110.36093 * 274.74571 * 26 13 11 38 38 H 1.09002 * 110.36515 * 37.06708 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3110 -6.2452 0.0019 15 6 4.8664 -7.6847 -0.0245 16 6 3.6851 -8.5022 -0.6105 17 1 3.6715 -8.4439 -1.6988 18 7 3.7375 -9.8960 -0.1621 19 6 3.1594 -10.8637 -0.9008 20 8 2.5954 -10.5808 -1.9365 21 6 3.2128 -12.2974 -0.4392 22 6 2.4864 -13.1862 -1.4507 23 9 3.1072 -13.0750 -2.6995 24 9 2.5364 -14.5171 -1.0225 25 9 1.1520 -12.7794 -1.5554 26 6 2.4655 -7.7680 0.0057 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7314 -0.8895 29 1 3.1245 -3.7314 0.8906 30 1 4.6472 -5.7019 -0.8813 31 1 4.6474 -5.7321 0.9029 32 1 5.7396 -7.7494 -0.6737 33 1 5.1077 -8.0236 0.9830 34 1 4.1882 -10.1223 0.6665 35 1 4.2525 -12.6141 -0.3573 36 1 2.7288 -12.3841 0.5336 37 1 2.2895 -8.1098 1.0257 38 1 1.5781 -7.9270 -0.6070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577892265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:18 Heat of formation + Delta-G solvation = -251.428207 kcal Electronic energy + Delta-G solvation = -26526.750504 eV Core-core repulsion = 21886.282347 eV Total energy + Delta-G solvation = -4640.468157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.06704 -48.59265 -48.54616 -41.44114 -40.55218 -38.51962 -35.50982 -34.58944 -33.19873 -31.89890 -30.85677 -29.02059 -27.65838 -25.47664 -24.33996 -22.34385 -21.83795 -20.76287 -19.83106 -19.59573 -19.53606 -18.62467 -18.10543 -17.99835 -17.42046 -16.88743 -16.74021 -16.48269 -16.26663 -15.69554 -15.47765 -15.42298 -15.26308 -14.95350 -14.79694 -14.71879 -14.66208 -14.52648 -14.39178 -14.20670 -13.86656 -13.53280 -13.34380 -13.17124 -13.02794 -12.86137 -12.76619 -12.63839 -12.61606 -11.86106 -11.76658 -11.27567 -11.12922 -11.05405 -10.35176 -10.29313 -9.73839 -8.69703 -8.34698 -6.14190 1.18618 1.35962 1.42383 1.44544 1.50111 1.53179 1.57862 1.93090 2.20168 2.27239 2.74584 2.99332 3.07542 3.12425 3.19927 3.41294 3.51478 3.75078 3.88371 3.98349 4.18290 4.19750 4.22637 4.29245 4.31807 4.43321 4.61310 4.74341 4.78304 4.94619 5.07322 5.21470 5.40143 5.41072 6.19225 6.31434 6.34414 7.05417 7.06045 7.07616 8.74378 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.033083 B = 0.001872 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.155355 B =14955.679921 C =15434.785772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.280 1.280 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.158 6.158 10 C -0.117 4.117 11 C 0.544 3.456 12 O -0.570 6.570 13 N -0.617 5.617 14 C 0.088 3.912 15 C -0.114 4.114 16 C 0.141 3.859 17 H 0.089 0.911 18 N -0.691 5.691 19 C 0.512 3.488 20 O -0.571 6.571 21 C -0.179 4.179 22 C 0.460 3.540 23 F -0.191 7.191 24 F -0.180 7.180 25 F -0.195 7.195 26 C 0.093 3.907 27 H 0.271 0.729 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.429 0.571 35 H 0.184 0.816 36 H 0.177 0.823 37 H 0.084 0.916 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.014 -27.971 4.101 34.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.205 1.205 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.069 5.931 10 C -0.268 4.268 11 C 0.332 3.668 12 O -0.449 6.449 13 N -0.352 5.352 14 C -0.034 4.034 15 C -0.152 4.152 16 C 0.034 3.966 17 H 0.107 0.893 18 N -0.345 5.345 19 C 0.298 3.702 20 O -0.449 6.449 21 C -0.219 4.219 22 C 0.405 3.595 23 F -0.172 7.172 24 F -0.161 7.161 25 F -0.176 7.176 26 C -0.031 4.031 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.269 0.731 35 H 0.202 0.798 36 H 0.194 0.806 37 H 0.102 0.898 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.656 -27.942 3.350 32.701 hybrid contribution 0.900 1.070 -0.107 1.402 sum 17.555 -26.872 3.244 32.262 Atomic orbital electron populations 1.70192 1.08073 1.28697 1.47918 1.26186 0.95992 1.03472 0.93705 0.84968 0.77757 0.75444 0.79601 1.20547 1.18374 1.18612 1.23154 0.95374 0.91676 1.59010 0.89635 1.85681 1.10774 0.99532 1.97065 1.23283 1.03326 0.93485 1.06682 1.19885 0.85426 0.86176 0.75284 1.90699 1.17399 1.85793 1.50968 1.48304 1.08335 1.05120 1.73459 1.22440 0.77239 0.99725 1.04003 1.22938 0.96796 0.90697 1.04734 1.21944 0.94398 0.80529 0.99739 0.89274 1.45446 1.56967 1.05048 1.27025 1.20501 0.77890 0.88028 0.83752 1.90881 1.44118 1.84031 1.25913 1.23045 1.08396 0.89697 1.00715 1.20341 0.77637 0.79627 0.81858 1.93197 1.82363 1.95916 1.45773 1.93210 1.96277 1.37098 1.89522 1.93205 1.37600 1.90356 1.96453 1.22685 0.98678 0.80211 1.01547 0.92005 0.87421 0.86920 0.90249 0.88958 0.86388 0.86441 0.73097 0.79812 0.80567 0.89777 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.35 29.55 68.60 2.03 45.37 16 4 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.54 -31.06 9.50 67.96 0.65 -30.42 16 8 H 0.09 4.47 7.80 -2.92 -0.02 4.44 16 9 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 10 C -0.12 -4.70 5.35 71.24 0.38 -4.31 16 11 C 0.54 21.25 7.87 87.66 0.69 21.94 16 12 O -0.57 -28.32 16.12 -3.01 -0.05 -28.37 16 13 N -0.62 -16.41 3.33 -811.35 -2.70 -19.11 16 14 C 0.09 1.30 6.48 86.73 0.56 1.86 16 15 C -0.11 -0.71 6.59 31.78 0.21 -0.50 16 16 C 0.14 1.90 3.44 46.46 0.16 2.06 16 17 H 0.09 1.71 7.54 -2.39 -0.02 1.69 16 18 N -0.69 -4.90 5.19 -435.61 -2.26 -7.17 16 19 C 0.51 6.68 7.60 87.66 0.67 7.35 16 20 O -0.57 -14.75 14.47 -3.02 -0.04 -14.79 16 21 C -0.18 -0.75 5.75 29.85 0.17 -0.58 16 22 C 0.46 6.56 2.89 71.98 0.21 6.77 16 23 F -0.19 -3.74 16.40 44.97 0.74 -3.00 16 24 F -0.18 -2.27 17.32 44.97 0.78 -1.49 16 25 F -0.19 -4.18 16.40 44.97 0.74 -3.44 16 26 C 0.09 2.12 6.61 86.93 0.57 2.70 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 30 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.12 0.04 8.00 -2.38 -0.02 0.03 16 34 H 0.43 -0.98 8.57 -92.71 -0.79 -1.78 16 35 H 0.18 -0.84 8.14 -2.39 -0.02 -0.85 16 36 H 0.18 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.04 1.36 8.04 -2.39 -0.02 1.34 16 Total: -1.00 -93.56 354.87 3.41 -90.15 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: 0.32 Total: 0.18 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 4.73 Total: 7.97 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -4.67 Total: -82.51 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.09 Total: -43.16 kcal Atomic # 9 Polarization: -10.19 SS G_CDS: 2.25 Total: -7.94 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -93.56 3.41 -90.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577892265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.278 kcal (2) G-P(sol) polarization free energy of solvation -93.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds