Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31596 * 122.22687 * 2 1 4 4 C 1.29944 * 117.13589 * 180.26826 * 3 2 1 5 5 N 1.38890 * 125.36569 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00216 * 179.97438 * 5 4 3 7 7 O 1.21291 * 119.99899 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00052 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.47134 * 39.99876 * 8 6 5 10 10 N 1.46901 * 109.47347 * 159.99866 * 8 6 5 11 11 C 1.52996 * 109.47477 * 279.99805 * 8 6 5 12 12 C 1.52996 * 109.47547 * 175.00122 * 11 8 6 13 13 C 1.53003 * 109.47089 * 180.02562 * 12 11 8 14 14 C 1.47205 * 109.47147 * 180.02562 * 13 12 11 15 15 N 9.96535 * 158.31089 * 130.57915 * 3 1 2 16 16 S 1.76144 * 109.27225 * 0.02562 * 4 3 2 17 17 C 1.34655 * 122.23269 * 180.28575 * 2 1 3 18 18 S 1.76194 * 125.92779 * 359.73201 * 17 2 1 19 19 C 1.76201 * 100.00174 * 179.97438 * 18 17 2 20 20 H 1.08003 * 119.99337 * 0.02562 * 19 18 17 21 21 C 1.38426 * 120.00292 * 179.97438 * 19 18 17 22 22 N 1.31803 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99711 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47024 * 90.00552 * 23 21 19 25 25 H 1.48513 * 109.46920 * 210.00077 * 23 21 19 26 26 H 1.48493 * 109.47666 * 330.00123 * 23 21 19 27 27 H 1.09004 * 109.47227 * 269.71307 * 1 2 3 28 28 H 1.09000 * 109.47499 * 29.71410 * 1 2 3 29 29 H 1.09000 * 109.47554 * 149.71715 * 1 2 3 30 30 H 0.96999 * 120.00068 * 359.95425 * 5 4 3 31 31 H 1.00911 * 110.99987 * 296.04681 * 10 8 6 32 32 H 1.00905 * 111.00162 * 59.99713 * 10 8 6 33 33 H 1.09006 * 109.46982 * 295.00267 * 11 8 6 34 34 H 1.09005 * 109.47326 * 54.99711 * 11 8 6 35 35 H 1.09000 * 109.47205 * 299.99639 * 12 11 8 36 36 H 1.09002 * 109.47202 * 59.99997 * 12 11 8 37 37 H 1.09006 * 109.47136 * 299.99960 * 13 12 11 38 38 H 1.09002 * 109.47176 * 59.99889 * 13 12 11 39 39 H 0.97003 * 120.00585 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 -0.0054 5 7 4.4042 2.0547 -0.0058 6 6 5.7296 1.8102 -0.0112 7 8 6.1354 0.6672 -0.0152 8 6 6.7074 2.9568 -0.0111 9 1 6.3465 3.7421 0.6531 10 7 8.0171 2.4836 0.4566 11 6 6.8429 3.5118 -1.4304 12 6 7.7379 4.7525 -1.4097 13 6 7.8727 5.3078 -2.8290 14 6 8.7344 6.5012 -2.8092 15 7 9.3994 7.4202 -2.7972 16 16 3.9345 -0.7098 -0.0121 17 6 2.2251 -1.1390 -0.0057 18 16 1.5697 -2.7745 -0.0072 19 6 3.0665 -3.7041 -0.0162 20 1 4.0187 -3.1943 -0.0186 21 6 3.0221 -5.0876 -0.0191 22 7 1.8602 -5.7097 -0.0157 23 14 4.6091 -6.0729 -0.0294 24 1 5.0366 -6.3373 1.3679 25 1 4.3865 -7.3626 -0.7314 26 1 5.6657 -5.3024 -0.7329 27 1 -0.3634 -0.0051 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3634 -0.8874 -0.5182 30 1 4.0798 2.9688 -0.0025 31 1 7.9677 2.1715 1.4149 32 1 8.3735 1.7546 -0.1432 33 1 7.2871 2.7541 -2.0760 34 1 5.8575 3.7810 -1.8109 35 1 7.2937 5.5103 -0.7642 36 1 8.7233 4.4834 -1.0293 37 1 8.3167 4.5503 -3.4749 38 1 6.8872 5.5771 -3.2090 39 1 1.8290 -6.6792 -0.0174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579864505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = 11.285041 kcal Electronic energy + Delta-G solvation = -23319.907003 eV Core-core repulsion = 19707.733310 eV Total energy + Delta-G solvation = -3612.173693 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51158 -38.67468 -37.55279 -36.14805 -34.90557 -33.35317 -32.86950 -30.63870 -29.03577 -27.18020 -25.92178 -25.75744 -23.19620 -21.81190 -21.00223 -19.70788 -18.26878 -17.85026 -17.82905 -17.01063 -16.52428 -15.91673 -15.83430 -15.26488 -15.15088 -15.09261 -14.52343 -14.18945 -13.99415 -13.88169 -13.43669 -13.24936 -13.15893 -12.72738 -12.38048 -12.17857 -12.03533 -11.95517 -11.92927 -11.49697 -11.43771 -11.30474 -11.17746 -11.11472 -10.93689 -10.64902 -10.30725 -10.17076 -9.58470 -9.28069 -9.07861 -8.80731 -8.70959 -7.86584 -6.64591 -6.55776 -4.32691 1.30011 1.82732 2.27553 2.43200 2.45170 2.48372 2.81724 3.03833 3.06377 3.13599 3.30737 3.54531 3.60229 3.93509 4.04676 4.28597 4.43219 4.53221 4.71259 4.78109 4.88034 4.96662 4.98713 5.12233 5.15843 5.18898 5.38166 5.69633 5.85353 5.93098 6.07762 6.18931 6.39319 6.43453 6.56975 6.90752 6.99081 7.09555 7.21352 7.28252 7.84012 7.99191 8.45968 8.83797 10.41072 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.002563 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.869389 B =10920.114616 C =12247.120924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.018 3.982 3 N -0.473 5.473 4 C 0.182 3.818 5 N -0.611 5.611 6 C 0.469 3.531 7 O -0.510 6.510 8 C 0.087 3.913 9 H 0.109 0.891 10 N -0.816 5.816 11 C -0.109 4.109 12 C -0.107 4.107 13 C -0.030 4.030 14 C 0.208 3.792 15 N -0.443 5.443 16 S 0.198 5.802 17 C -0.250 4.250 18 S 0.152 5.848 19 C -0.557 4.557 20 H 0.088 0.912 21 C 0.082 3.918 22 N -0.862 5.862 23 Si 0.925 3.075 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.265 1.265 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.414 0.586 31 H 0.349 0.651 32 H 0.354 0.646 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 16.177 -2.004 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.125 4.125 3 N -0.194 5.194 4 C -0.189 4.189 5 N -0.260 5.260 6 C 0.252 3.748 7 O -0.384 6.384 8 C -0.030 4.030 9 H 0.127 0.873 10 N -0.346 5.346 11 C -0.147 4.147 12 C -0.146 4.146 13 C -0.070 4.070 14 C -0.109 4.109 15 N -0.120 5.120 16 S 0.442 5.558 17 C -0.487 4.487 18 S 0.402 5.598 19 C -0.706 4.706 20 H 0.106 0.894 21 C -0.129 4.129 22 N -0.495 5.495 23 Si 0.750 3.250 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.189 1.189 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.252 0.748 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.691 16.673 -2.134 18.485 hybrid contribution 0.277 -0.978 0.166 1.030 sum 7.968 15.695 -1.968 17.712 Atomic orbital electron populations 1.20118 0.88046 1.02126 1.01810 1.19036 0.96715 0.84606 1.12116 1.65821 1.02879 1.32375 1.18372 1.23836 0.89944 0.93034 1.12131 1.42575 1.04602 1.08017 1.70762 1.22501 0.82622 0.92957 0.76754 1.90719 1.77098 1.22623 1.47977 1.21527 0.87914 0.94156 0.99361 0.87289 1.59203 1.21243 1.45603 1.08537 1.21571 1.01139 0.97924 0.94104 1.21448 1.02358 0.96683 0.94098 1.19391 0.97676 0.89517 1.00450 1.29199 0.93927 0.94557 0.93243 1.81184 1.10372 1.11931 1.08474 1.85806 1.01854 0.95506 1.72675 1.28777 1.01261 1.06767 1.11921 1.83092 1.11010 0.84387 1.81272 1.23253 0.93548 0.94042 1.59723 0.89375 1.25034 0.98306 0.96687 0.92909 1.70006 1.24402 1.10371 1.44681 0.86026 0.81196 0.78794 0.79022 1.19617 1.20241 1.18914 0.91882 0.91908 0.91054 0.74830 0.83783 0.83161 0.90293 0.90265 0.90894 0.89370 0.87249 0.87323 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.02 36.00 0.36 -0.68 16 2 C 0.02 0.36 6.73 -83.96 -0.57 -0.20 16 3 N -0.47 -8.95 10.55 -9.78 -0.10 -9.05 16 4 C 0.18 3.22 8.40 -87.20 -0.73 2.49 16 5 N -0.61 -7.52 5.40 -11.78 -0.06 -7.58 16 6 C 0.47 5.33 7.03 -10.99 -0.08 5.25 16 7 O -0.51 -7.93 13.77 5.55 0.08 -7.85 16 8 C 0.09 0.56 3.15 -68.87 -0.22 0.35 16 9 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 10 N -0.82 -5.61 8.44 -5.66 -0.05 -5.66 16 11 C -0.11 -0.48 4.84 -26.74 -0.13 -0.61 16 12 C -0.11 -0.37 5.06 -26.73 -0.14 -0.51 16 13 C -0.03 -0.09 5.70 -29.51 -0.17 -0.25 16 14 C 0.21 1.46 15.43 -20.81 -0.32 1.14 16 15 N -0.44 -4.75 18.53 42.09 0.78 -3.97 16 16 S 0.20 4.14 18.35 -107.50 -1.97 2.16 16 17 C -0.25 -5.58 6.67 29.46 0.20 -5.39 16 18 S 0.15 3.72 20.74 -107.50 -2.23 1.49 16 19 C -0.56 -14.83 9.26 30.80 0.29 -14.55 16 20 H 0.09 2.33 5.97 -52.48 -0.31 2.01 16 21 C 0.08 2.14 5.49 -17.49 -0.10 2.05 16 22 N -0.86 -23.31 13.22 55.47 0.73 -22.58 16 23 Si 0.92 20.25 29.55 -169.99 -5.02 15.22 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.20 7.38 -51.93 -0.38 0.82 16 30 H 0.41 3.63 8.82 -40.82 -0.36 3.27 16 31 H 0.35 2.47 9.06 -39.29 -0.36 2.12 16 32 H 0.35 2.69 8.58 -39.29 -0.34 2.36 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.42 7.75 -51.93 -0.40 0.01 16 37 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.11 0.12 8.14 -51.93 -0.42 -0.31 16 39 H 0.28 6.96 8.32 -40.82 -0.34 6.62 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -33.43 368.68 -8.56 -41.99 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.67 Total: 1.19 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.60 Total: -10.92 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 1.30 Total: -48.84 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.08 Total: -7.85 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 7.85 SS G_CDS: -4.20 Total: 3.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.43 -8.56 -41.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579864505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.277 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds