Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31596 * 122.22687 * 2 1 4 4 C 1.29944 * 117.13589 * 180.26826 * 3 2 1 5 5 N 1.38890 * 125.36569 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00216 * 179.97438 * 5 4 3 7 7 O 1.21291 * 119.99899 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00052 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.47134 * 39.99876 * 8 6 5 10 10 N 1.46901 * 109.47347 * 159.99866 * 8 6 5 11 11 C 1.52996 * 109.47477 * 279.99805 * 8 6 5 12 12 C 1.52996 * 109.47547 * 175.00122 * 11 8 6 13 13 C 1.53003 * 109.47089 * 180.02562 * 12 11 8 14 14 C 1.47205 * 109.47147 * 180.02562 * 13 12 11 15 15 N 9.96535 * 158.31089 * 130.57915 * 3 1 2 16 16 S 1.76144 * 109.27225 * 0.02562 * 4 3 2 17 17 C 1.34655 * 122.23269 * 180.28575 * 2 1 3 18 18 S 1.76194 * 125.92779 * 359.73201 * 17 2 1 19 19 C 1.76201 * 100.00174 * 179.97438 * 18 17 2 20 20 H 1.08003 * 119.99337 * 0.02562 * 19 18 17 21 21 C 1.38426 * 120.00292 * 179.97438 * 19 18 17 22 22 N 1.31803 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99711 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47024 * 90.00552 * 23 21 19 25 25 H 1.48513 * 109.46920 * 210.00077 * 23 21 19 26 26 H 1.48493 * 109.47666 * 330.00123 * 23 21 19 27 27 H 1.09004 * 109.47227 * 269.71307 * 1 2 3 28 28 H 1.09000 * 109.47499 * 29.71410 * 1 2 3 29 29 H 1.09000 * 109.47554 * 149.71715 * 1 2 3 30 30 H 0.96999 * 120.00068 * 359.95425 * 5 4 3 31 31 H 1.00911 * 110.99987 * 296.04681 * 10 8 6 32 32 H 1.00905 * 111.00162 * 59.99713 * 10 8 6 33 33 H 1.09006 * 109.46982 * 295.00267 * 11 8 6 34 34 H 1.09005 * 109.47326 * 54.99711 * 11 8 6 35 35 H 1.09000 * 109.47205 * 299.99639 * 12 11 8 36 36 H 1.09002 * 109.47202 * 59.99997 * 12 11 8 37 37 H 1.09006 * 109.47136 * 299.99960 * 13 12 11 38 38 H 1.09002 * 109.47176 * 59.99889 * 13 12 11 39 39 H 0.97003 * 120.00585 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 -0.0054 5 7 4.4042 2.0547 -0.0058 6 6 5.7296 1.8102 -0.0112 7 8 6.1354 0.6672 -0.0152 8 6 6.7074 2.9568 -0.0111 9 1 6.3465 3.7421 0.6531 10 7 8.0171 2.4836 0.4566 11 6 6.8429 3.5118 -1.4304 12 6 7.7379 4.7525 -1.4097 13 6 7.8727 5.3078 -2.8290 14 6 8.7344 6.5012 -2.8092 15 7 9.3994 7.4202 -2.7972 16 16 3.9345 -0.7098 -0.0121 17 6 2.2251 -1.1390 -0.0057 18 16 1.5697 -2.7745 -0.0072 19 6 3.0665 -3.7041 -0.0162 20 1 4.0187 -3.1943 -0.0186 21 6 3.0221 -5.0876 -0.0191 22 7 1.8602 -5.7097 -0.0157 23 14 4.6091 -6.0729 -0.0294 24 1 5.0366 -6.3373 1.3679 25 1 4.3865 -7.3626 -0.7314 26 1 5.6657 -5.3024 -0.7329 27 1 -0.3634 -0.0051 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3634 -0.8874 -0.5182 30 1 4.0798 2.9688 -0.0025 31 1 7.9677 2.1715 1.4149 32 1 8.3735 1.7546 -0.1432 33 1 7.2871 2.7541 -2.0760 34 1 5.8575 3.7810 -1.8109 35 1 7.2937 5.5103 -0.7642 36 1 8.7233 4.4834 -1.0293 37 1 8.3167 4.5503 -3.4749 38 1 6.8872 5.5771 -3.2090 39 1 1.8290 -6.6792 -0.0174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579864505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -12.924569 kcal Electronic energy + Delta-G solvation = -23320.956811 eV Core-core repulsion = 19707.733310 eV Total energy + Delta-G solvation = -3613.223500 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57034 -40.16699 -38.09806 -36.78454 -36.12822 -34.80642 -33.83562 -32.04342 -29.53591 -28.76892 -27.70877 -26.71517 -24.26658 -22.56218 -22.00334 -21.02667 -19.78025 -19.15907 -18.39472 -18.15235 -17.47578 -17.07561 -17.02321 -16.62987 -16.30730 -16.03629 -15.55824 -15.31970 -15.00329 -14.92233 -14.57888 -14.36413 -13.99058 -13.68398 -13.52058 -13.39902 -13.27479 -13.06536 -12.89311 -12.80788 -12.64116 -12.33323 -12.22228 -12.09132 -12.02571 -11.89146 -11.46705 -11.33956 -11.30971 -10.80959 -10.45408 -10.43820 -9.89183 -9.49218 -8.56600 -8.35019 -6.28866 -0.19553 0.26192 0.85487 1.21168 1.27825 1.34788 1.42117 1.54302 1.72557 1.90813 1.94300 2.06160 2.15454 2.82499 3.10945 3.15474 3.39572 3.65604 3.85028 3.94322 4.14230 4.40612 4.45938 4.56163 4.64131 4.73334 4.86030 4.86289 4.92376 4.99407 5.09579 5.10651 5.30036 5.41242 5.50381 5.58086 5.88118 6.02704 6.11628 6.37884 6.72890 6.81474 6.87980 6.92443 8.50947 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.002563 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.869389 B =10920.114616 C =12247.120924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.037 3.963 3 N -0.483 5.483 4 C 0.228 3.772 5 N -0.599 5.599 6 C 0.471 3.529 7 O -0.546 6.546 8 C 0.098 3.902 9 H 0.140 0.860 10 N -0.812 5.812 11 C -0.106 4.106 12 C -0.099 4.099 13 C -0.027 4.027 14 C 0.237 3.763 15 N -0.517 5.517 16 S 0.156 5.844 17 C -0.285 4.285 18 S 0.094 5.906 19 C -0.573 4.573 20 H 0.081 0.919 21 C 0.033 3.967 22 N -0.895 5.895 23 Si 0.986 3.014 24 H -0.264 1.264 25 H -0.265 1.265 26 H -0.266 1.266 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.437 0.563 31 H 0.348 0.652 32 H 0.350 0.650 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 18.710 -2.237 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.205 5.205 4 C -0.146 4.146 5 N -0.251 5.251 6 C 0.256 3.744 7 O -0.422 6.422 8 C -0.018 4.018 9 H 0.157 0.843 10 N -0.340 5.340 11 C -0.144 4.144 12 C -0.138 4.138 13 C -0.066 4.066 14 C -0.079 4.079 15 N -0.195 5.195 16 S 0.400 5.600 17 C -0.520 4.520 18 S 0.342 5.658 19 C -0.722 4.722 20 H 0.099 0.901 21 C -0.174 4.174 22 N -0.530 5.530 23 Si 0.807 3.193 24 H -0.189 1.189 25 H -0.190 1.190 26 H -0.190 1.190 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.279 0.721 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.470 19.283 -2.364 21.194 hybrid contribution 0.163 -1.390 0.253 1.423 sum 8.632 17.893 -2.111 19.978 Atomic orbital electron populations 1.20240 0.85897 1.03105 1.02987 1.19684 0.98358 0.84294 1.08072 1.66048 1.02854 1.31124 1.20503 1.24267 0.90284 0.93260 1.06769 1.42866 1.04207 1.07744 1.70286 1.23798 0.82386 0.93808 0.74362 1.90722 1.77438 1.24913 1.49110 1.21822 0.85942 0.92486 1.01590 0.84261 1.59272 1.20965 1.45299 1.08501 1.21597 1.02450 0.97983 0.92362 1.21337 1.01507 0.96354 0.94581 1.19665 0.98358 0.88096 1.00502 1.29948 0.92663 0.94199 0.91058 1.81216 1.12901 1.14475 1.10914 1.85988 1.02097 0.98398 1.73490 1.28565 1.01881 1.05886 1.15644 1.82927 1.11299 0.86471 1.85136 1.23423 0.93819 0.94765 1.60171 0.90137 1.25896 1.01383 0.97509 0.92602 1.70092 1.26120 1.10685 1.46110 0.85123 0.77286 0.77607 0.79268 1.18930 1.18984 1.19014 0.90481 0.89416 0.91529 0.72099 0.83864 0.83581 0.90769 0.88302 0.90023 0.90638 0.85434 0.84496 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.03 10.02 71.23 0.71 -1.32 16 2 C 0.04 1.47 6.73 41.77 0.28 1.75 16 3 N -0.48 -17.11 10.55 -184.87 -1.95 -19.06 16 4 C 0.23 7.54 8.40 179.15 1.50 9.05 16 5 N -0.60 -12.55 5.40 -309.57 -1.67 -14.22 16 6 C 0.47 9.23 7.03 87.66 0.62 9.84 16 7 O -0.55 -16.07 13.77 -3.06 -0.04 -16.12 16 8 C 0.10 0.88 3.15 44.17 0.14 1.01 16 9 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 10 N -0.81 -8.88 8.44 -171.81 -1.45 -10.33 16 11 C -0.11 -0.46 4.84 30.59 0.15 -0.31 16 12 C -0.10 -0.28 5.06 30.59 0.15 -0.12 16 13 C -0.03 -0.04 5.70 28.79 0.16 0.12 16 14 C 0.24 2.80 15.43 89.46 1.38 4.18 16 15 N -0.52 -10.70 18.53 19.99 0.37 -10.33 16 16 S 0.16 6.52 18.35 -56.49 -1.04 5.48 16 17 C -0.28 -12.89 6.67 67.00 0.45 -12.44 16 18 S 0.09 4.83 20.74 -56.49 -1.17 3.66 16 19 C -0.57 -31.80 9.26 67.86 0.63 -31.18 16 20 H 0.08 4.44 5.97 -2.91 -0.02 4.42 16 21 C 0.03 1.80 5.49 84.74 0.46 2.26 16 22 N -0.90 -50.12 13.22 21.59 0.29 -49.84 16 23 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.24 7.38 -2.39 -0.02 2.22 16 30 H 0.44 5.48 8.82 -92.71 -0.82 4.67 16 31 H 0.35 4.09 9.06 -89.69 -0.81 3.28 16 32 H 0.35 4.58 8.58 -89.69 -0.77 3.81 16 33 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.10 0.12 8.14 -2.38 -0.02 0.10 16 35 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.07 0.46 7.75 -2.39 -0.02 0.44 16 37 H 0.13 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.14 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.28 14.51 8.32 -92.71 -0.77 13.74 16 Total: -1.00 -77.34 368.68 0.74 -76.60 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -1.26 Total: 6.91 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 6.64 Total: -17.15 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -4.42 Total: -103.77 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.04 Total: -16.12 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 11.35 SS G_CDS: -2.21 Total: 9.14 kcal Total: -77.34 0.74 -76.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579864505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.677 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds