Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47465 * 60.00198 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 N 1.46500 * 114.26621 * 139.79206 * 15 14 13 17 17 C 1.34767 * 119.99895 * 111.47434 * 16 15 14 18 18 O 1.21287 * 120.00399 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99869 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47286 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47564 * 180.02562 * 20 19 17 22 22 F 1.39900 * 109.47315 * 59.99867 * 21 20 19 23 23 F 1.39897 * 109.47408 * 180.02562 * 21 20 19 24 24 F 1.39906 * 109.46614 * 299.99825 * 21 20 19 25 25 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 26 26 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 28 28 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 29 29 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 30 30 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 31 31 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 32 32 H 0.97001 * 119.99661 * 291.47702 * 16 15 14 33 33 H 1.08992 * 109.47297 * 300.00293 * 19 17 16 34 34 H 1.08998 * 109.47345 * 60.00964 * 19 17 16 35 35 H 1.09004 * 109.47092 * 300.00470 * 20 19 17 36 36 H 1.09004 * 109.47161 * 60.00103 * 20 19 17 37 37 H 1.09001 * 113.46952 * 321.86856 * 25 13 11 38 38 H 1.09004 * 113.46955 * 92.25117 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 7 4.9744 -8.9335 0.1928 17 6 5.9428 -9.4241 0.9914 18 8 6.0891 -8.9799 2.1105 19 6 6.8433 -10.5255 0.4943 20 6 7.8470 -10.8964 1.5880 21 6 8.7617 -12.0142 1.0832 22 9 9.4506 -11.5757 -0.0527 23 9 9.6789 -12.3537 2.0834 24 9 7.9913 -13.1357 0.7575 25 6 2.7297 -7.8092 -0.0165 26 1 -0.4851 0.8400 -0.0004 27 1 3.1212 -3.7293 -0.8992 28 1 3.1279 -3.7332 0.8807 29 1 4.7224 -6.6035 -1.0299 30 1 4.8324 -5.7788 0.5838 31 1 4.0523 -7.8025 1.7636 32 1 4.8572 -9.2891 -0.7020 33 1 6.2430 -11.3993 0.2412 34 1 7.3799 -10.1844 -0.3910 35 1 8.4474 -10.0227 1.8416 36 1 7.3102 -11.2377 2.4732 37 1 1.9144 -8.1821 0.6034 38 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581969509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -193.412562 kcal Electronic energy + Delta-G solvation = -25735.691861 eV Core-core repulsion = 21097.739451 eV Total energy + Delta-G solvation = -4637.952410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.60998 -48.09815 -48.09349 -40.94694 -39.65236 -37.66087 -34.37976 -34.27365 -32.46196 -30.48242 -28.44124 -27.10499 -26.19376 -25.47526 -23.49826 -21.96492 -21.10298 -19.28627 -19.08101 -18.92593 -18.20395 -17.79449 -17.08327 -16.98598 -16.63785 -16.35404 -15.48766 -15.14872 -14.97036 -14.90166 -14.83199 -14.51657 -14.35211 -14.25662 -14.22116 -14.10813 -13.87916 -13.64087 -13.00988 -12.95352 -12.91533 -12.72251 -12.53273 -12.29136 -12.07337 -11.88304 -11.43708 -11.09218 -11.04718 -10.78989 -10.49976 -9.85249 -9.65420 -9.48097 -9.10581 -8.76887 -8.28511 -6.54796 -6.24932 -3.96207 2.02482 2.09238 2.40850 2.77308 3.00566 3.19749 3.22236 3.28569 3.31258 3.44681 3.52963 3.53029 3.93699 4.05507 4.16754 4.29750 4.35995 4.42823 4.69317 4.75900 4.81860 4.96824 5.10029 5.10510 5.13578 5.26697 5.37729 5.49986 5.51802 5.81199 5.85202 5.99145 6.09055 6.87740 7.56984 7.62161 7.70237 8.32348 8.41934 9.20518 10.82569 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.001664 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.012384 B =16818.543043 C =17621.723377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.145 4.145 11 C 0.567 3.433 12 O -0.510 6.510 13 N -0.650 5.650 14 C 0.087 3.913 15 C 0.109 3.891 16 N -0.715 5.715 17 C 0.522 3.478 18 O -0.532 6.532 19 C -0.147 4.147 20 C -0.152 4.152 21 C 0.453 3.547 22 F -0.184 7.184 23 F -0.182 7.182 24 F -0.184 7.184 25 C 0.097 3.903 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.406 0.594 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.248 -26.300 -0.859 32.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.295 4.295 11 C 0.357 3.643 12 O -0.383 6.383 13 N -0.390 5.390 14 C -0.038 4.038 15 C 0.002 3.998 16 N -0.367 5.367 17 C 0.308 3.692 18 O -0.407 6.407 19 C -0.188 4.188 20 C -0.190 4.190 21 C 0.399 3.601 22 F -0.165 7.165 23 F -0.163 7.163 24 F -0.166 7.166 25 C -0.027 4.027 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.152 0.848 32 H 0.241 0.759 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.104 0.896 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.244 -25.976 -0.043 30.637 hybrid contribution 2.104 0.926 -0.708 2.405 sum 18.348 -25.050 -0.751 31.060 Atomic orbital electron populations 1.70023 1.05959 1.27420 1.46828 1.25000 0.95046 0.99071 0.94477 0.86100 0.79579 0.81787 0.77932 1.19597 1.20543 1.20515 1.22892 0.94948 0.91492 1.59004 0.90818 1.85410 1.04754 0.96413 1.96736 1.23479 1.06635 0.94375 1.05024 1.19942 0.85141 0.84745 0.74499 1.90728 1.14702 1.84746 1.48088 1.49345 1.07747 1.05752 1.76107 1.23505 0.82739 0.96538 1.01001 1.22986 0.89533 0.86195 1.01042 1.45774 1.33804 1.38692 1.18402 1.20307 0.80631 0.82903 0.85310 1.90780 1.70190 1.60234 1.19535 1.21633 0.97803 0.99514 0.99802 1.22619 0.97802 0.97623 1.00998 1.20574 0.80363 0.83648 0.75550 1.93197 1.81232 1.89288 1.52800 1.93209 1.68796 1.93288 1.61043 1.93196 1.74950 1.55497 1.92923 1.23202 0.96962 0.81894 1.00630 0.92182 0.89214 0.89106 0.89548 0.89563 0.84789 0.75888 0.87206 0.87168 0.86231 0.86266 0.89572 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.14 -2.95 5.98 36.00 0.22 -2.73 16 11 C 0.57 10.75 8.10 -10.99 -0.09 10.67 16 12 O -0.51 -11.72 16.64 5.56 0.09 -11.63 16 13 N -0.65 -8.71 3.69 -185.06 -0.68 -9.39 16 14 C 0.09 0.80 8.25 -8.37 -0.07 0.73 16 15 C 0.11 0.84 4.62 -67.66 -0.31 0.53 16 16 N -0.71 -3.49 5.39 -53.47 -0.29 -3.78 16 17 C 0.52 3.24 7.83 -10.99 -0.09 3.15 16 18 O -0.53 -5.56 15.57 5.55 0.09 -5.47 16 19 C -0.15 -0.45 5.46 -27.88 -0.15 -0.60 16 20 C -0.15 -0.63 4.55 -26.73 -0.12 -0.75 16 21 C 0.45 2.39 3.16 37.16 0.12 2.51 16 22 F -0.18 -1.10 16.80 2.25 0.04 -1.06 16 23 F -0.18 -1.24 17.32 2.25 0.04 -1.21 16 24 F -0.18 -1.08 16.80 2.25 0.04 -1.05 16 25 C 0.10 0.90 8.38 -8.50 -0.07 0.83 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 28 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.13 1.28 7.45 -51.93 -0.39 0.89 16 32 H 0.41 0.76 8.76 -40.82 -0.36 0.40 16 33 H 0.11 0.16 7.80 -51.93 -0.41 -0.24 16 34 H 0.11 0.17 7.80 -51.93 -0.41 -0.23 16 35 H 0.12 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.12 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -37.17 361.15 -6.58 -43.75 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -4.48 Total: -4.19 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.37 Total: 1.42 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.24 Total: -38.47 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.18 Total: -17.10 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.11 Total: -3.31 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.17 -6.58 -43.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581969509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.665 kcal (2) G-P(sol) polarization free energy of solvation -37.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds