Wall clock time and date at job start Sat Apr 11 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00051 * 2 1 4 4 N 1.46493 * 109.47205 * 124.99731 * 3 2 1 5 5 C 1.46500 * 120.00293 * 274.99786 * 4 3 2 6 6 C 1.50699 * 109.47268 * 275.00498 * 5 4 3 7 7 H 1.08000 * 120.00114 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99995 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00128 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99679 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47066 * 89.99981 * 10 8 6 12 12 H 1.48504 * 109.46819 * 209.99324 * 10 8 6 13 13 H 1.48496 * 109.47193 * 329.99658 * 10 8 6 14 14 S 1.65605 * 120.00036 * 95.00281 * 4 3 2 15 15 O 1.42095 * 106.40174 * 156.45968 * 14 4 3 16 16 O 1.42095 * 106.40047 * 23.53518 * 14 4 3 17 17 C 1.76200 * 107.21390 * 269.99621 * 14 4 3 18 18 C 1.38369 * 120.34301 * 90.00345 * 17 14 4 19 19 N 1.31931 * 121.08842 * 180.27924 * 18 17 14 20 20 C 1.31684 * 121.88711 * 359.46468 * 19 18 17 21 21 C 1.50698 * 119.72468 * 180.27184 * 20 19 18 22 22 C 1.39574 * 120.55921 * 0.52795 * 20 19 18 23 23 C 1.47724 * 120.56779 * 179.76286 * 22 20 19 24 24 O 1.21468 * 119.99739 * 353.76699 * 23 22 20 25 25 O 1.34708 * 120.00272 * 173.76020 * 23 22 20 26 26 C 1.38340 * 120.35014 * 270.02210 * 17 14 4 27 27 H 1.08005 * 120.00221 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00250 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99810 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47175 * 4.99649 * 3 2 1 31 31 H 1.09002 * 109.46956 * 245.00064 * 3 2 1 32 32 H 1.09004 * 109.47056 * 34.99906 * 5 4 3 33 33 H 1.08996 * 109.47508 * 155.00130 * 5 4 3 34 34 H 0.96995 * 120.00154 * 180.02562 * 9 8 6 35 35 H 1.07993 * 119.45496 * 359.97438 * 18 17 14 36 36 H 1.08994 * 109.47280 * 263.69381 * 21 20 19 37 37 H 1.09004 * 109.47125 * 23.69311 * 21 20 19 38 38 H 1.08996 * 109.47370 * 143.68908 * 21 20 19 39 39 H 0.96695 * 117.00248 * 180.02562 * 25 23 22 40 40 H 1.08003 * 120.85803 * 359.95525 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9936 1.3319 1.1314 5 6 2.5284 1.7622 2.4522 6 6 2.5990 3.2647 2.5448 7 1 2.9552 3.8414 1.7041 8 6 2.2097 3.9031 3.7034 9 7 1.7764 3.2008 4.7274 10 14 2.2979 5.7655 3.8183 11 1 1.0132 6.3512 3.3584 12 1 2.5470 6.1631 5.2273 13 1 3.4037 6.2625 2.9608 14 16 4.5712 0.8760 0.9173 15 8 5.3146 1.5047 1.9523 16 8 4.8566 1.0544 -0.4632 17 6 4.6593 -0.8569 1.2237 18 6 4.4756 -1.7596 0.1912 19 7 4.5330 -3.0602 0.4050 20 6 4.7762 -3.5587 1.5993 21 6 4.8370 -5.0527 1.7872 22 6 4.9730 -2.7152 2.6938 23 6 5.2407 -3.2743 4.0347 24 8 5.1794 -4.4739 4.2157 25 8 5.5530 -2.4540 5.0565 26 6 4.9125 -1.3293 2.4991 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4026 -0.9314 32 1 1.4982 1.4373 2.5982 33 1 3.1611 1.3206 3.2220 34 1 1.5022 3.6499 5.5422 35 1 4.2771 -1.3934 -0.8052 36 1 3.8711 -5.4142 2.1397 37 1 5.0783 -5.5289 0.8368 38 1 5.6057 -5.2957 2.5207 39 1 5.7201 -2.8662 5.9151 40 1 5.0603 -0.6472 3.3233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:35 Heat of formation + Delta-G solvation = -98.236191 kcal Electronic energy + Delta-G solvation = -28001.074009 eV Core-core repulsion = 23909.105497 eV Total energy + Delta-G solvation = -4091.968512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13024 -39.61779 -36.91304 -36.48509 -36.42255 -35.39653 -33.43588 -33.27829 -32.85610 -31.97656 -28.46637 -27.57615 -25.37897 -25.01699 -22.97062 -22.42115 -22.15876 -19.89480 -18.91257 -18.29879 -17.78943 -16.97041 -16.84895 -16.61732 -16.39920 -16.03447 -15.78501 -15.56648 -14.60645 -14.55260 -14.45479 -13.77596 -13.69394 -13.49167 -13.14515 -12.95057 -12.81276 -12.51493 -12.49138 -12.23776 -11.85845 -11.76539 -11.64387 -11.47611 -11.38557 -11.21352 -11.01095 -10.76828 -10.62970 -10.50347 -10.36198 -10.09332 -9.93377 -9.79243 -9.61287 -9.20448 -8.50419 -8.24104 -6.12238 -4.16655 0.09158 0.57173 0.82358 2.19528 2.45826 2.69830 3.20653 3.28465 3.35464 3.40670 3.58654 3.88455 4.14268 4.28316 4.33503 4.40407 4.59989 4.79252 5.01732 5.13573 5.23189 5.27192 5.34553 5.38558 5.41875 5.46017 5.53375 5.71103 5.84014 6.03190 6.11301 6.17892 6.31512 6.35493 6.79264 6.89565 7.13491 7.27170 7.41716 7.46712 7.63185 7.84616 8.11540 8.85657 9.49008 10.96388 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.004359 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.912603 B = 6421.524383 C = 7395.441232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 C 0.144 3.856 4 N -0.973 5.973 5 C 0.255 3.745 6 C -0.530 4.530 7 H 0.063 0.937 8 C 0.064 3.936 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.271 1.271 14 S 2.688 3.312 15 O -0.932 6.932 16 O -0.967 6.967 17 C -0.751 4.751 18 C 0.234 3.766 19 N -0.502 5.502 20 C 0.237 3.763 21 C -0.118 4.118 22 C -0.210 4.210 23 C 0.538 3.462 24 O -0.508 6.508 25 O -0.504 6.504 26 C 0.092 3.908 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.180 0.820 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.418 0.582 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -13.188 -5.155 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.195 4.195 3 C 0.018 3.982 4 N -0.812 5.812 5 C 0.134 3.866 6 C -0.569 4.569 7 H 0.081 0.919 8 C -0.138 4.138 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.196 1.196 14 S 2.773 3.227 15 O -0.922 6.922 16 O -0.957 6.957 17 C -0.835 4.835 18 C 0.075 3.925 19 N -0.212 5.212 20 C 0.100 3.900 21 C -0.175 4.175 22 C -0.214 4.214 23 C 0.383 3.617 24 O -0.399 6.399 25 O -0.315 6.315 26 C 0.066 3.934 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.197 0.803 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.278 0.722 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.546 -13.388 -6.178 15.165 hybrid contribution -0.157 0.592 1.731 1.836 sum 3.390 -12.796 -4.446 13.964 Atomic orbital electron populations 1.23807 0.95785 1.01791 0.99979 1.23452 0.96755 0.98860 1.00432 1.20438 0.93328 0.95576 0.88852 1.57459 1.27031 1.78077 1.18613 1.19154 0.96413 0.95451 0.75593 1.21449 1.43960 0.91518 1.00007 0.91910 1.24915 0.94861 0.98714 0.95344 1.69912 1.43553 1.35699 1.04154 0.86513 0.78470 0.85125 0.77469 1.20617 1.21073 1.19603 1.02406 0.73838 0.72862 0.73640 1.93626 1.69074 1.71714 1.57785 1.93516 1.83974 1.85041 1.33210 1.32692 1.18748 1.30898 1.01156 1.22883 0.83435 0.87715 0.98422 1.67868 1.16045 1.14883 1.22354 1.21836 0.83958 0.97518 0.86738 1.21212 1.05073 0.87285 1.03921 1.19928 1.14002 0.94985 0.92487 1.20390 0.72665 0.83994 0.84697 1.90841 1.49072 1.15941 1.84025 1.84604 1.81239 1.43604 1.22063 1.21778 0.80945 0.94658 0.96008 0.88030 0.88932 0.88356 0.88518 0.89115 0.94232 0.94384 0.92622 0.80327 0.88951 0.90266 0.87810 0.72226 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 29.02 0.42 -1.85 16 2 C -0.18 -2.45 9.84 -36.02 -0.35 -2.80 16 3 C 0.14 2.29 6.12 -5.20 -0.03 2.26 16 4 N -0.97 -18.54 2.75 -116.95 -0.32 -18.87 16 5 C 0.26 5.96 5.10 -5.19 -0.03 5.93 16 6 C -0.53 -14.00 9.38 -34.44 -0.32 -14.32 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.04 13.29 55.43 0.74 -24.31 16 10 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 S 2.69 49.21 5.66 -107.50 -0.61 48.60 16 15 O -0.93 -20.35 16.32 -57.17 -0.93 -21.28 16 16 O -0.97 -17.83 15.85 -57.17 -0.91 -18.74 16 17 C -0.75 -11.56 5.98 -39.50 -0.24 -11.80 16 18 C 0.23 3.22 10.06 -17.46 -0.18 3.05 16 19 N -0.50 -6.86 10.26 -9.13 -0.09 -6.95 16 20 C 0.24 3.12 6.82 -82.16 -0.56 2.56 16 21 C -0.12 -1.24 8.88 36.00 0.32 -0.92 16 22 C -0.21 -2.89 5.89 -104.83 -0.62 -3.51 16 23 C 0.54 6.75 8.21 34.61 0.28 7.03 16 24 O -0.51 -6.67 14.16 -19.24 -0.27 -6.94 16 25 O -0.50 -5.35 12.78 -40.51 -0.52 -5.87 16 26 C 0.09 1.39 9.21 -38.85 -0.36 1.03 16 27 H 0.10 1.28 7.84 -52.48 -0.41 0.87 16 28 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.10 1.28 7.43 -52.49 -0.39 0.89 16 30 H 0.10 1.57 7.76 -51.93 -0.40 1.17 16 31 H 0.09 1.31 6.91 -51.93 -0.36 0.95 16 32 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.18 2.07 7.62 -52.49 -0.40 1.67 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.11 5.85 -51.93 -0.30 0.80 16 39 H 0.42 2.31 9.11 45.56 0.42 2.72 16 40 H 0.17 2.57 7.36 -52.48 -0.39 2.18 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -33.01 363.26 -8.09 -41.10 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.87 Total: 3.49 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.76 Total: -11.69 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.32 Total: -50.12 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -2.63 Total: -52.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 49.21 SS G_CDS: -0.61 Total: 48.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.01 -8.09 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.135 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds