Wall clock time and date at job start Sat Apr 11 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33626 * 123.54252 * 2 1 4 4 N 1.39362 * 124.74856 * 359.97330 * 3 2 1 5 5 C 1.34771 * 120.00022 * 179.72549 * 4 3 2 6 6 O 1.21414 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.49270 * 119.99949 * 179.97438 * 5 4 3 8 8 O 1.21372 * 120.00002 * 5.79540 * 7 5 4 9 9 N 1.34781 * 120.00046 * 185.78473 * 7 5 4 10 10 C 1.46499 * 119.99926 * 5.68303 * 9 7 5 11 11 C 1.46500 * 119.99819 * 185.68070 * 9 7 5 12 12 H 1.08994 * 109.47170 * 0.02562 * 11 9 7 13 13 C 1.53001 * 109.46730 * 240.00046 * 11 9 7 14 14 C 1.50696 * 109.46970 * 120.00381 * 11 9 7 15 15 H 1.08002 * 120.00349 * 5.65641 * 14 11 9 16 16 C 1.37874 * 119.99975 * 185.65553 * 14 11 9 17 17 N 1.31519 * 120.00214 * 197.81722 * 16 14 11 18 18 Si 1.86808 * 119.99915 * 18.09288 * 16 14 11 19 19 H 1.48497 * 109.47031 * 179.72220 * 18 16 14 20 20 H 1.48497 * 109.47196 * 299.72712 * 18 16 14 21 21 H 1.48505 * 109.46763 * 59.72518 * 18 16 14 22 22 S 1.75500 * 110.50493 * 179.71004 * 3 2 1 23 23 C 1.70422 * 92.50666 * 0.26382 * 22 3 2 24 24 C 1.36086 * 110.95610 * 0.02562 * 23 22 3 25 25 C 1.47033 * 123.43867 * 180.02562 * 24 23 22 26 26 O 1.21563 * 120.00040 * 179.97438 * 25 24 23 27 27 O 1.34807 * 120.00026 * 359.97296 * 25 24 23 28 28 H 1.09000 * 109.46956 * 90.00007 * 1 2 3 29 29 H 1.09001 * 109.47187 * 209.99893 * 1 2 3 30 30 H 1.09000 * 109.47386 * 330.00740 * 1 2 3 31 31 H 0.96999 * 120.00018 * 359.72059 * 4 3 2 32 32 H 1.09000 * 109.47135 * 275.61700 * 10 9 7 33 33 H 1.09003 * 109.47479 * 35.61422 * 10 9 7 34 34 H 1.08998 * 109.47548 * 155.61453 * 10 9 7 35 35 H 1.08999 * 109.47056 * 54.27554 * 13 11 9 36 36 H 1.08996 * 109.46827 * 174.27476 * 13 11 9 37 37 H 1.09000 * 109.47479 * 294.27726 * 13 11 9 38 38 H 0.96998 * 119.99618 * 355.24179 * 17 16 14 39 39 H 1.08000 * 124.52199 * 180.02562 * 23 22 3 40 40 H 0.96701 * 116.99436 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2453 1.1137 0.0000 4 7 1.7298 2.4085 -0.0005 5 6 2.5649 3.4663 0.0051 6 8 3.7664 3.2913 0.0111 7 6 2.0128 4.8531 0.0040 8 8 0.8162 5.0300 0.1041 9 7 2.8430 5.9089 -0.1081 10 6 4.2713 5.6948 -0.3535 11 6 2.3170 7.2707 0.0155 12 1 1.2428 7.2303 0.1953 13 6 2.5897 8.0419 -1.2775 14 6 2.9930 7.9675 1.1681 15 1 3.8029 7.4823 1.6926 16 6 2.5774 9.2245 1.5532 17 7 3.3581 9.9754 2.2990 18 14 0.9022 9.8579 1.0219 19 1 0.6932 11.2229 1.5681 20 1 0.8375 9.9028 -0.4610 21 1 -0.1556 8.9515 1.5364 22 16 3.9550 0.7178 0.0083 23 6 3.6436 -0.9577 0.0039 24 6 2.3052 -1.2039 -0.0042 25 6 1.7304 -2.5572 -0.0091 26 8 0.5239 -2.7051 -0.0157 27 8 2.5415 -3.6340 -0.0062 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 0.7700 2.5484 -0.0050 32 1 4.7800 5.5161 0.5938 33 1 4.4026 4.8308 -1.0050 34 1 4.6943 6.5781 -0.8320 35 1 2.1880 7.4852 -2.1241 36 1 2.1106 9.0196 -1.2252 37 1 3.6646 8.1703 -1.4042 38 1 4.1955 9.6199 2.6355 39 1 4.4066 -1.7220 0.0070 40 1 2.1173 -4.5031 -0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599999723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:38 Heat of formation + Delta-G solvation = -113.464393 kcal Electronic energy + Delta-G solvation = -26905.983326 eV Core-core repulsion = 22813.354469 eV Total energy + Delta-G solvation = -4092.628857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98241 -40.46618 -38.77645 -37.84807 -36.31620 -36.05728 -34.67803 -32.85161 -30.97428 -30.38422 -27.97142 -26.53200 -25.38536 -24.98467 -24.45711 -22.10120 -21.21248 -20.16416 -18.87530 -18.31500 -18.05591 -17.63624 -17.12953 -16.56403 -16.49531 -16.19503 -15.87102 -15.47101 -15.20537 -14.55915 -14.06491 -13.82848 -13.74324 -13.37625 -13.31843 -12.99953 -12.88528 -12.72129 -12.44110 -12.22653 -12.16847 -11.92576 -11.85273 -11.84159 -11.43533 -11.29780 -11.06696 -10.96980 -10.60970 -10.55605 -10.03945 -9.86697 -9.26742 -9.17090 -8.65571 -8.46146 -8.30780 -8.02930 -6.61238 -4.26170 0.39472 1.01615 1.11372 1.68236 1.83842 2.25650 2.80339 2.87994 3.28741 3.35679 3.40413 3.52730 3.74765 4.36002 4.45868 4.51256 4.92747 4.98928 5.11004 5.11603 5.31061 5.53444 5.57687 5.70929 5.76459 5.94273 6.03717 6.05806 6.17088 6.27968 6.29041 6.35309 6.42746 6.67516 6.76793 6.92093 7.12312 7.45563 7.62382 7.63000 7.97212 8.20639 8.27487 8.74364 9.42744 10.77563 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.002568 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.173643 B =10899.961163 C =11506.068074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.104 4.104 3 C 0.008 3.992 4 N -0.609 5.609 5 C 0.502 3.498 6 O -0.489 6.489 7 C 0.500 3.500 8 O -0.533 6.533 9 N -0.543 5.543 10 C 0.085 3.915 11 C 0.232 3.768 12 H 0.058 0.942 13 C -0.164 4.164 14 C -0.616 4.616 15 H 0.064 0.936 16 C 0.039 3.961 17 N -0.895 5.895 18 Si 1.039 2.961 19 H -0.282 1.282 20 H -0.271 1.271 21 H -0.278 1.278 22 S 0.327 5.673 23 C -0.235 4.235 24 C -0.133 4.133 25 C 0.548 3.452 26 O -0.511 6.511 27 O -0.514 6.514 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.430 0.570 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.270 0.730 39 H 0.179 0.821 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 -22.572 -7.091 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.205 4.205 4 N -0.257 5.257 5 C 0.285 3.715 6 O -0.364 6.364 7 C 0.281 3.719 8 O -0.412 6.412 9 N -0.273 5.273 10 C -0.057 4.057 11 C 0.132 3.868 12 H 0.076 0.924 13 C -0.222 4.222 14 C -0.654 4.654 15 H 0.082 0.918 16 C -0.168 4.168 17 N -0.528 5.528 18 Si 0.867 3.133 19 H -0.208 1.208 20 H -0.198 1.198 21 H -0.204 1.204 22 S 0.592 5.408 23 C -0.374 4.374 24 C -0.150 4.150 25 C 0.391 3.609 26 O -0.401 6.401 27 O -0.326 6.326 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.270 0.730 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.196 0.804 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 1.004 -19.871 -6.953 21.077 hybrid contribution -0.831 -2.900 0.096 3.018 sum 0.173 -22.771 -6.858 23.782 Atomic orbital electron populations 1.20566 0.88388 1.03738 1.02963 1.19339 0.97292 0.88332 1.06704 1.21722 0.99528 0.87448 1.11823 1.42629 1.12022 1.01290 1.69713 1.21090 0.86458 0.87209 0.76708 1.90636 1.14459 1.84795 1.46527 1.19309 0.87001 0.84605 0.81030 1.90741 1.14350 1.85209 1.50927 1.48005 1.08683 1.06694 1.63906 1.21939 0.80337 1.01753 1.01719 1.19455 0.96723 0.75643 0.95030 0.92419 1.22544 1.01708 1.00883 0.97047 1.22122 1.21493 1.04476 1.17331 0.91828 1.25691 1.02958 0.92807 0.95322 1.70874 1.12120 1.35714 1.34077 0.84137 0.75609 0.76765 0.76824 1.20762 1.19798 1.20378 1.84300 0.98213 0.91648 1.66624 1.26488 0.99852 1.06249 1.04839 1.18581 0.92097 0.89996 1.14318 1.20139 0.84092 0.84684 0.72006 1.90866 1.15785 1.86899 1.46573 1.84572 1.43889 1.18063 1.86099 0.90897 0.89023 0.91888 0.72960 0.92269 0.90747 0.90817 0.95176 0.91256 0.92766 0.92018 0.80375 0.72815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.25 36.00 0.33 -0.71 16 2 C -0.10 -1.21 6.04 -103.79 -0.63 -1.84 16 3 C 0.01 0.09 7.06 -15.74 -0.11 -0.02 16 4 N -0.61 -8.09 5.37 -11.48 -0.06 -8.15 16 5 C 0.50 7.89 7.66 -11.67 -0.09 7.80 16 6 O -0.49 -7.68 10.85 5.44 0.06 -7.62 16 7 C 0.50 9.54 7.72 -11.67 -0.09 9.45 16 8 O -0.53 -11.15 15.83 5.48 0.09 -11.06 16 9 N -0.54 -11.00 2.75 -175.84 -0.48 -11.48 16 10 C 0.09 1.48 8.36 59.85 0.50 1.98 16 11 C 0.23 5.36 2.21 -69.08 -0.15 5.21 16 12 H 0.06 1.42 5.56 -51.93 -0.29 1.13 16 13 C -0.16 -3.36 8.74 37.16 0.32 -3.04 16 14 C -0.62 -16.38 8.67 -34.44 -0.30 -16.67 16 15 H 0.06 1.82 7.80 -52.49 -0.41 1.41 16 16 C 0.04 1.07 5.34 -17.82 -0.10 0.98 16 17 N -0.89 -26.22 13.70 55.43 0.76 -25.46 16 18 Si 1.04 24.17 26.45 -169.99 -4.50 19.68 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -5.73 5.51 56.52 0.31 -5.42 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 S 0.33 3.52 20.05 -107.50 -2.16 1.36 16 23 C -0.24 -2.21 10.54 29.96 0.32 -1.89 16 24 C -0.13 -1.46 5.98 -104.66 -0.63 -2.08 16 25 C 0.55 5.73 8.30 34.30 0.28 6.02 16 26 O -0.51 -6.44 15.01 -19.31 -0.29 -6.73 16 27 O -0.51 -3.71 13.08 -40.78 -0.53 -4.24 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.04 6.05 -51.93 -0.31 0.73 16 30 H 0.06 0.60 7.16 -51.93 -0.37 0.23 16 31 H 0.43 5.21 6.98 -40.82 -0.28 4.93 16 32 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.07 1.14 6.00 -51.93 -0.31 0.83 16 34 H 0.07 1.26 6.55 -51.93 -0.34 0.92 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.46 4.85 -51.93 -0.25 1.20 16 37 H 0.05 1.07 6.89 -51.93 -0.36 0.71 16 38 H 0.27 7.86 8.73 -40.82 -0.36 7.51 16 39 H 0.18 1.25 8.01 -52.49 -0.42 0.83 16 40 H 0.41 1.10 9.11 45.56 0.42 1.51 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -32.20 346.71 -5.66 -37.86 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.44 Total: 5.42 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -0.33 Total: 5.19 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.21 Total: -45.09 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.68 Total: -29.65 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.50 Total: 19.68 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.16 Total: 1.36 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.20 -5.66 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599999723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.605 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds