Wall clock time and date at job start Sat Apr 11 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33558 * 124.38533 * 2 1 4 4 C 1.38170 * 115.09134 * 180.25061 * 3 2 1 5 5 N 1.39294 * 123.52044 * 179.73356 * 4 3 2 6 6 C 1.34781 * 119.99806 * 353.66665 * 5 4 3 7 7 O 1.21377 * 120.00303 * 5.39313 * 6 5 4 8 8 C 1.49334 * 119.99950 * 185.39198 * 6 5 4 9 9 O 1.21358 * 120.00241 * 0.02562 * 8 6 5 10 10 N 1.34780 * 119.99933 * 180.02562 * 8 6 5 11 11 C 1.46503 * 119.99956 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47264 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47161 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47194 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99441 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99908 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99829 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47277 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47303 * 119.99846 * 18 16 14 21 21 H 1.48511 * 109.47197 * 239.99719 * 18 16 14 22 22 C 1.37607 * 112.96106 * 359.51940 * 4 3 2 23 23 C 1.41503 * 125.49230 * 180.17366 * 22 4 3 24 24 O 1.21697 * 119.99830 * 0.30016 * 23 22 4 25 25 O 1.34978 * 119.99914 * 180.30473 * 23 22 4 26 26 S 1.70557 * 124.38657 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46889 * 89.99356 * 1 2 3 28 28 H 1.09000 * 109.46862 * 209.99097 * 1 2 3 29 29 H 1.08998 * 109.46938 * 329.99143 * 1 2 3 30 30 H 1.08004 * 122.44887 * 359.97438 * 3 2 1 31 31 H 0.96996 * 120.00173 * 173.66467 * 5 4 3 32 32 H 0.97001 * 120.00075 * 359.97438 * 10 8 6 33 33 H 1.08997 * 109.47304 * 300.00056 * 11 10 8 34 34 H 1.09008 * 109.47016 * 59.99547 * 11 10 8 35 35 H 1.09003 * 109.46655 * 300.00123 * 12 11 10 36 36 H 1.08996 * 109.46905 * 59.99678 * 12 11 10 37 37 H 1.09003 * 109.47334 * 299.99582 * 13 12 11 38 38 H 1.08996 * 109.47575 * 59.99964 * 13 12 11 39 39 H 0.97011 * 119.99554 * 180.02562 * 17 16 14 40 40 H 0.96698 * 113.99720 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2613 1.1022 0.0000 4 6 3.6249 0.8791 -0.0055 5 7 4.5715 1.9009 -0.0118 6 6 4.1779 3.1834 -0.1415 7 8 2.9954 3.4570 -0.1545 8 6 5.1966 4.2678 -0.2694 9 8 6.3789 3.9943 -0.2569 10 7 4.8030 5.5503 -0.3986 11 6 5.8024 6.6142 -0.5235 12 6 5.0957 7.9648 -0.6563 13 6 6.1394 9.0757 -0.7874 14 6 5.4434 10.4060 -0.9176 15 1 4.3645 10.4541 -0.9083 16 6 6.1840 11.5615 -1.0497 17 7 7.4977 11.5028 -1.0615 18 14 5.3212 13.2103 -1.2118 19 1 3.8509 13.0059 -1.1707 20 1 5.7299 14.0952 -0.0915 21 1 5.6969 13.8408 -2.5029 22 6 3.9500 -0.4580 0.0007 23 6 5.2636 -0.9841 0.0007 24 8 6.2203 -0.2319 0.0005 25 8 5.4556 -2.3201 0.0009 26 16 2.4703 -1.4075 0.0006 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3633 0.8899 0.5140 30 1 1.8364 2.0952 -0.0004 31 1 5.5140 1.6894 0.0773 32 1 3.8580 5.7689 -0.4090 33 1 6.4377 6.6218 0.3622 34 1 6.4142 6.4360 -1.4079 35 1 4.4607 7.9569 -1.5423 36 1 4.4837 8.1431 0.2278 37 1 6.7748 9.0837 0.0983 38 1 6.7511 8.8972 -1.6717 39 1 8.0187 12.3158 -1.1541 40 1 6.3859 -2.5838 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600248245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:42 Heat of formation + Delta-G solvation = -135.093204 kcal Electronic energy + Delta-G solvation = -25703.780559 eV Core-core repulsion = 21610.213807 eV Total energy + Delta-G solvation = -4093.566752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.60916 -40.50316 -39.30226 -37.91724 -36.43539 -35.86878 -34.85302 -33.38639 -32.03301 -31.31732 -28.51209 -27.47596 -25.73766 -23.77879 -22.95088 -22.42937 -20.93152 -20.48039 -19.94547 -18.99327 -18.57572 -17.85292 -16.73894 -16.53684 -16.48122 -16.07803 -16.04740 -15.71522 -15.23561 -15.02639 -14.47818 -14.44809 -14.32814 -14.00565 -13.86394 -13.72740 -12.96905 -12.86804 -12.73972 -12.34896 -11.97921 -11.93196 -11.85764 -11.80810 -11.26929 -11.05331 -11.00699 -10.95194 -10.80031 -10.59986 -9.94649 -9.87779 -9.45140 -9.22401 -9.15068 -9.09006 -8.42266 -8.40457 -6.04869 -4.07970 -0.26799 0.93345 1.09198 1.33215 1.83624 2.14246 2.52299 2.82050 3.05599 3.28663 3.36244 3.38947 3.41422 4.11575 4.32822 4.42603 4.54408 4.76036 4.94645 5.01517 5.17796 5.31253 5.42287 5.48272 5.52768 5.61886 5.63927 5.94799 6.02907 6.07493 6.15003 6.49235 6.60560 6.75399 6.90870 7.16698 7.38848 7.45224 7.59349 7.70364 7.87409 7.93584 8.34192 8.98714 9.56565 11.06391 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022466 B = 0.001866 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.007025 B =15002.537797 C =16207.715789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.162 4.162 3 C -0.189 4.189 4 C 0.255 3.745 5 N -0.619 5.619 6 C 0.513 3.487 7 O -0.490 6.490 8 C 0.503 3.497 9 O -0.512 6.512 10 N -0.687 5.687 11 C 0.113 3.887 12 C -0.122 4.122 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.348 4.348 23 C 0.562 3.438 24 O -0.519 6.519 25 O -0.505 6.505 26 S 0.259 5.741 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.190 0.810 31 H 0.440 0.560 32 H 0.412 0.588 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 -30.869 2.804 33.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.283 4.283 3 C -0.221 4.221 4 C 0.140 3.860 5 N -0.268 5.268 6 C 0.296 3.704 7 O -0.364 6.364 8 C 0.282 3.718 9 O -0.388 6.388 10 N -0.339 5.339 11 C -0.009 4.009 12 C -0.160 4.160 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.469 4.469 23 C 0.409 3.591 24 O -0.412 6.412 25 O -0.316 6.316 26 S 0.526 5.474 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.207 0.793 31 H 0.285 0.715 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -12.994 -31.919 2.771 34.574 hybrid contribution 0.637 2.314 -0.080 2.401 sum -12.357 -29.605 2.691 32.193 Atomic orbital electron populations 1.20510 0.86555 1.04092 1.03733 1.24431 1.02366 0.98136 1.03361 1.20724 0.90263 1.02997 1.08091 1.17190 0.89801 0.85675 0.93315 1.43331 1.12590 1.04015 1.66855 1.20778 0.89413 0.83761 0.76486 1.90583 1.17409 1.82498 1.45881 1.19560 0.88213 0.84067 0.79985 1.90830 1.16861 1.82560 1.48532 1.46052 1.12484 1.05270 1.70058 1.21918 0.90618 0.85774 1.02595 1.21933 1.00347 0.92476 1.01280 1.19041 0.93360 0.91302 0.97697 1.21226 0.93070 0.91514 1.50254 0.92507 1.25034 0.94851 0.99348 0.95286 1.69975 1.04712 1.28278 1.50265 0.86514 0.79775 0.83899 0.77668 1.19732 1.20992 1.20996 1.21835 0.97217 0.95709 1.32117 1.17842 0.87816 0.80798 0.72669 1.90896 1.42690 1.59189 1.48383 1.85013 1.36292 1.23806 1.86468 1.83106 0.91013 1.04962 1.68275 0.89659 0.90609 0.89568 0.79343 0.71531 0.75211 0.90828 0.90847 0.92366 0.92355 0.96148 0.96148 0.92949 0.72795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.30 36.01 0.37 -0.04 16 2 C -0.16 -1.21 6.26 -35.95 -0.23 -1.44 16 3 C -0.19 -1.90 8.93 -41.24 -0.37 -2.27 16 4 C 0.26 2.90 6.63 -84.72 -0.56 2.34 16 5 N -0.62 -7.82 5.32 -10.90 -0.06 -7.88 16 6 C 0.51 6.78 7.84 -11.64 -0.09 6.69 16 7 O -0.49 -6.44 13.25 5.47 0.07 -6.37 16 8 C 0.50 7.48 7.89 -11.64 -0.09 7.39 16 9 O -0.51 -8.97 16.48 5.49 0.09 -8.88 16 10 N -0.69 -9.83 5.55 -60.76 -0.34 -10.16 16 11 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 12 C -0.12 -2.31 5.27 -26.74 -0.14 -2.45 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 14 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.35 -3.55 6.29 -38.57 -0.24 -3.79 16 23 C 0.56 5.79 8.08 31.98 0.26 6.04 16 24 O -0.52 -6.68 15.21 -19.42 -0.30 -6.98 16 25 O -0.51 -3.53 13.31 -41.26 -0.55 -4.08 16 26 S 0.26 1.84 22.76 -107.50 -2.45 -0.61 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.19 2.04 5.21 -52.55 -0.27 1.77 16 31 H 0.44 5.89 5.73 -40.82 -0.23 5.66 16 32 H 0.41 5.15 7.94 -40.82 -0.32 4.83 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.41 1.15 8.98 45.56 0.41 1.56 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -33.51 365.90 -7.73 -41.24 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -3.77 Total: 6.09 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.66 Total: 1.59 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.34 Total: -43.83 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.68 Total: -26.31 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.45 Total: -0.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.51 -7.73 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600248245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.857 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds