Wall clock time and date at job start Sat Apr 11 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33558 * 124.38533 * 2 1 4 4 C 1.38170 * 115.09134 * 180.25061 * 3 2 1 5 5 N 1.39294 * 123.52044 * 179.73356 * 4 3 2 6 6 C 1.34781 * 119.99806 * 353.66665 * 5 4 3 7 7 O 1.21377 * 120.00303 * 5.39313 * 6 5 4 8 8 C 1.49334 * 119.99950 * 185.39198 * 6 5 4 9 9 O 1.21358 * 120.00241 * 0.02562 * 8 6 5 10 10 N 1.34780 * 119.99933 * 180.02562 * 8 6 5 11 11 C 1.46503 * 119.99956 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47264 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47161 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47194 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99441 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99908 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99829 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47277 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47303 * 119.99846 * 18 16 14 21 21 H 1.48511 * 109.47197 * 239.99719 * 18 16 14 22 22 C 1.37607 * 112.96106 * 359.51940 * 4 3 2 23 23 C 1.41503 * 125.49230 * 180.17366 * 22 4 3 24 24 O 1.21697 * 119.99830 * 0.30016 * 23 22 4 25 25 O 1.34978 * 119.99914 * 180.30473 * 23 22 4 26 26 S 1.70557 * 124.38657 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46889 * 89.99356 * 1 2 3 28 28 H 1.09000 * 109.46862 * 209.99097 * 1 2 3 29 29 H 1.08998 * 109.46938 * 329.99143 * 1 2 3 30 30 H 1.08004 * 122.44887 * 359.97438 * 3 2 1 31 31 H 0.96996 * 120.00173 * 173.66467 * 5 4 3 32 32 H 0.97001 * 120.00075 * 359.97438 * 10 8 6 33 33 H 1.08997 * 109.47304 * 300.00056 * 11 10 8 34 34 H 1.09008 * 109.47016 * 59.99547 * 11 10 8 35 35 H 1.09003 * 109.46655 * 300.00123 * 12 11 10 36 36 H 1.08996 * 109.46905 * 59.99678 * 12 11 10 37 37 H 1.09003 * 109.47334 * 299.99582 * 13 12 11 38 38 H 1.08996 * 109.47575 * 59.99964 * 13 12 11 39 39 H 0.97011 * 119.99554 * 180.02562 * 17 16 14 40 40 H 0.96698 * 113.99720 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2613 1.1022 0.0000 4 6 3.6249 0.8791 -0.0055 5 7 4.5715 1.9009 -0.0118 6 6 4.1779 3.1834 -0.1415 7 8 2.9954 3.4570 -0.1545 8 6 5.1966 4.2678 -0.2694 9 8 6.3789 3.9943 -0.2569 10 7 4.8030 5.5503 -0.3986 11 6 5.8024 6.6142 -0.5235 12 6 5.0957 7.9648 -0.6563 13 6 6.1394 9.0757 -0.7874 14 6 5.4434 10.4060 -0.9176 15 1 4.3645 10.4541 -0.9083 16 6 6.1840 11.5615 -1.0497 17 7 7.4977 11.5028 -1.0615 18 14 5.3212 13.2103 -1.2118 19 1 3.8509 13.0059 -1.1707 20 1 5.7299 14.0952 -0.0915 21 1 5.6969 13.8408 -2.5029 22 6 3.9500 -0.4580 0.0007 23 6 5.2636 -0.9841 0.0007 24 8 6.2203 -0.2319 0.0005 25 8 5.4556 -2.3201 0.0009 26 16 2.4703 -1.4075 0.0006 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3633 0.8899 0.5140 30 1 1.8364 2.0952 -0.0004 31 1 5.5140 1.6894 0.0773 32 1 3.8580 5.7689 -0.4090 33 1 6.4377 6.6218 0.3622 34 1 6.4142 6.4360 -1.4079 35 1 4.4607 7.9569 -1.5423 36 1 4.4837 8.1431 0.2278 37 1 6.7748 9.0837 0.0983 38 1 6.7511 8.8972 -1.6717 39 1 8.0187 12.3158 -1.1541 40 1 6.3859 -2.5838 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600248245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:42 Heat of formation + Delta-G solvation = -159.778470 kcal Electronic energy + Delta-G solvation = -25704.850993 eV Core-core repulsion = 21610.213807 eV Total energy + Delta-G solvation = -4094.637186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.55470 -41.36206 -40.36202 -38.78895 -37.27887 -37.12675 -35.84109 -35.18274 -33.10289 -32.70643 -29.27608 -28.95611 -27.00661 -25.10332 -23.96031 -23.35025 -22.41171 -21.73393 -20.71628 -19.93475 -19.50039 -18.69602 -18.48652 -17.76283 -17.50470 -17.06486 -16.93573 -16.61837 -16.43924 -16.31072 -16.15096 -15.32505 -15.28749 -15.00647 -14.81187 -14.55246 -14.30127 -13.78924 -13.63604 -13.57865 -13.47478 -13.15526 -12.85828 -12.79400 -12.69708 -12.55932 -12.38086 -11.96759 -11.85730 -11.77741 -11.71412 -11.53992 -11.21986 -10.80676 -10.55805 -10.39742 -9.88535 -9.12775 -8.19747 -6.30538 -1.02258 0.06357 0.26862 0.64190 1.07112 1.13686 1.41767 1.42313 1.55243 1.65968 2.01853 2.18483 2.34112 2.43074 3.10033 3.14416 3.60673 3.83228 4.05139 4.16608 4.25135 4.34474 4.50856 4.54593 4.62222 4.73606 4.79981 4.90335 5.02711 5.14151 5.14897 5.17436 5.30033 5.37914 5.51722 5.70410 5.72199 5.84449 6.07748 6.22921 6.37027 6.70708 6.77121 6.86917 7.38924 8.92359 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022466 B = 0.001866 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.007025 B =15002.537797 C =16207.715789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.152 4.152 3 C -0.213 4.213 4 C 0.230 3.770 5 N -0.620 5.620 6 C 0.520 3.480 7 O -0.491 6.491 8 C 0.506 3.494 9 O -0.542 6.542 10 N -0.676 5.676 11 C 0.125 3.875 12 C -0.105 4.105 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.066 0.934 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.373 4.373 23 C 0.563 3.437 24 O -0.554 6.554 25 O -0.495 6.495 26 S 0.331 5.669 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.179 0.821 31 H 0.435 0.565 32 H 0.423 0.577 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.070 0.930 37 H -0.004 1.004 38 H -0.004 1.004 39 H 0.263 0.737 40 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.646 -32.450 2.841 36.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.273 4.273 3 C -0.244 4.244 4 C 0.116 3.884 5 N -0.268 5.268 6 C 0.302 3.698 7 O -0.365 6.365 8 C 0.285 3.715 9 O -0.420 6.420 10 N -0.329 5.329 11 C 0.002 3.998 12 C -0.143 4.143 13 C -0.014 4.014 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.494 4.494 23 C 0.411 3.589 24 O -0.448 6.448 25 O -0.307 6.307 26 S 0.599 5.401 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.196 0.804 31 H 0.278 0.722 32 H 0.261 0.739 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.072 0.928 40 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -15.915 -33.557 2.811 37.246 hybrid contribution 1.488 2.602 -0.085 2.999 sum -14.427 -30.955 2.726 34.261 Atomic orbital electron populations 1.20700 0.84187 1.05366 1.04960 1.24865 1.03972 0.97794 1.00669 1.20618 0.89921 1.03420 1.10397 1.17451 0.90117 0.85803 0.95058 1.43252 1.12689 1.04081 1.66743 1.20260 0.88808 0.83689 0.77083 1.90594 1.16993 1.82532 1.46368 1.19848 0.88192 0.84404 0.79041 1.90815 1.18266 1.83051 1.49828 1.45808 1.12593 1.04738 1.69760 1.21558 0.90659 0.85517 1.02025 1.21639 0.98804 0.91466 1.02363 1.18948 0.94194 0.92903 0.95401 1.21705 0.93711 0.92719 1.49618 0.91610 1.26003 0.95542 1.03624 0.94972 1.70112 1.06404 1.29435 1.51467 0.85381 0.79151 0.78793 0.77601 1.18301 1.20615 1.20629 1.22136 0.98789 0.96097 1.32334 1.17947 0.87588 0.81424 0.71926 1.90880 1.43772 1.60135 1.50060 1.84967 1.38122 1.21899 1.85731 1.82843 0.88312 1.03186 1.65780 0.88255 0.88438 0.89238 0.80436 0.72156 0.73888 0.91511 0.91586 0.91199 0.91159 0.98552 0.98569 0.92829 0.70650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.30 71.24 0.73 0.19 16 2 C -0.15 -1.92 6.26 24.62 0.15 -1.77 16 3 C -0.21 -4.09 8.93 21.19 0.19 -3.90 16 4 C 0.23 5.20 6.63 37.79 0.25 5.46 16 5 N -0.62 -16.08 5.32 -306.75 -1.63 -17.71 16 6 C 0.52 13.92 7.84 87.23 0.68 14.61 16 7 O -0.49 -12.82 13.25 -3.33 -0.04 -12.86 16 8 C 0.51 15.27 7.89 87.23 0.69 15.96 16 9 O -0.54 -19.59 16.48 -3.27 -0.05 -19.64 16 10 N -0.68 -19.21 5.55 -464.51 -2.58 -21.79 16 11 C 0.13 4.22 5.67 86.38 0.49 4.71 16 12 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.54 -29.81 9.11 25.60 0.23 -29.57 16 15 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 17 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 18 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.37 -7.28 6.29 22.93 0.14 -7.13 16 23 C 0.56 11.32 8.08 68.62 0.55 11.87 16 24 O -0.55 -14.57 15.21 19.19 0.29 -14.28 16 25 O -0.49 -6.14 13.31 -58.96 -0.78 -6.93 16 26 S 0.33 3.81 22.76 -56.49 -1.29 2.53 16 27 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.18 3.77 5.21 -3.96 -0.02 3.75 16 31 H 0.43 12.21 5.73 -92.71 -0.53 11.68 16 32 H 0.42 10.18 7.94 -92.71 -0.74 9.44 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 40 H 0.43 1.77 8.98 -74.06 -0.67 1.11 16 Total: -1.00 -73.49 365.90 0.32 -73.17 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.80 Total: 19.85 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 4.89 Total: 8.22 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -3.92 Total: -95.81 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -0.59 Total: -53.72 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.29 Total: 2.53 kcal Total: -73.49 0.32 -73.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600248245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.606 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds