Wall clock time and date at job start Sat Apr 11 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47255 * 239.99898 * 3 2 1 5 5 H 1.48504 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47176 * 120.00188 * 3 2 1 7 7 C 1.37880 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00146 * 172.22595 * 7 2 1 9 9 C 1.50696 * 119.99679 * 352.22603 * 7 2 1 10 10 C 1.53005 * 115.55086 * 84.78351 * 9 7 2 11 11 S 1.81395 * 109.46896 * 65.19495 * 10 9 7 12 12 O 1.42103 * 110.54200 * 285.43312 * 11 10 9 13 13 O 1.42096 * 110.54486 * 62.18907 * 11 10 9 14 14 N 1.65609 * 104.44976 * 173.81644 * 11 10 9 15 15 C 1.46494 * 120.00301 * 64.99603 * 14 11 10 16 16 C 1.50693 * 109.47271 * 165.00277 * 15 14 11 17 17 C 1.38359 * 119.45361 * 94.72707 * 16 15 14 18 18 C 1.38344 * 119.30591 * 179.79086 * 17 16 15 19 19 C 1.40076 * 118.28472 * 0.47277 * 18 17 16 20 20 C 1.47726 * 120.56133 * 179.76783 * 19 18 17 21 21 O 1.21467 * 120.00345 * 359.97438 * 20 19 18 22 22 O 1.34710 * 119.99703 * 179.97438 * 20 19 18 23 23 C 1.39569 * 118.87118 * 359.75159 * 19 18 17 24 24 N 1.31685 * 120.55964 * 0.02562 * 23 19 18 25 25 C 1.53004 * 117.50110 * 230.45463 * 9 7 2 26 26 C 1.53006 * 117.50229 * 299.11233 * 9 7 2 27 27 H 0.96997 * 119.99944 * 5.02258 * 1 2 3 28 28 H 1.08997 * 109.46909 * 305.19207 * 10 9 7 29 29 H 1.09004 * 109.46859 * 185.19301 * 10 9 7 30 30 H 0.96996 * 119.99467 * 245.00080 * 14 11 10 31 31 H 1.09009 * 109.46874 * 285.00793 * 15 14 11 32 32 H 1.09003 * 109.47301 * 44.99783 * 15 14 11 33 33 H 1.07999 * 120.34880 * 0.02562 * 17 16 15 34 34 H 1.08009 * 120.85435 * 180.22629 * 18 17 16 35 35 H 0.96697 * 117.00132 * 179.97438 * 22 20 19 36 36 H 1.08000 * 119.72066 * 179.97438 * 23 19 18 37 37 H 1.09004 * 117.50060 * 215.00654 * 25 9 7 38 38 H 1.08999 * 117.49298 * 0.02562 * 25 9 7 39 39 H 1.08999 * 117.49430 * 359.97438 * 26 9 7 40 40 H 1.08997 * 117.50062 * 144.97462 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0771 -1.1983 -0.1270 9 6 1.2614 -2.4932 0.1754 10 6 0.6668 -3.0914 -1.1011 11 16 2.0069 -3.5624 -2.2293 12 8 2.5775 -2.4101 -2.8342 13 8 2.8265 -4.5625 -1.6401 14 7 1.2434 -4.3417 -3.4752 15 6 0.3173 -3.6074 -4.3408 16 6 0.0483 -4.4123 -5.5860 17 6 -1.0629 -5.2351 -5.6374 18 6 -1.3093 -5.9694 -6.7838 19 6 -0.4094 -5.8556 -7.8511 20 6 -0.6211 -6.6208 -9.0969 21 8 -1.5818 -7.3567 -9.2019 22 8 0.2513 -6.5024 -10.1165 23 6 0.6905 -5.0069 -7.7177 24 7 0.8792 -4.3250 -6.6071 25 6 1.7805 -3.4660 1.2362 26 6 0.4827 -2.6910 1.4776 27 1 -0.4850 0.8368 -0.0735 28 1 0.0272 -2.3530 -1.5847 29 1 0.0775 -3.9731 -0.8489 30 1 1.4094 -5.2845 -3.6318 31 1 -0.6189 -3.4366 -3.8091 32 1 0.7589 -2.6495 -4.6156 33 1 -1.7329 -5.3006 -4.7930 34 1 -2.1712 -6.6167 -6.8524 35 1 0.0711 -7.0231 -10.9112 36 1 1.3933 -4.9091 -8.5320 37 1 1.6984 -4.5321 1.0247 38 1 2.6592 -3.1660 1.8071 39 1 0.5083 -1.8815 2.2071 40 1 -0.4533 -3.2469 1.4247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:50 Heat of formation + Delta-G solvation = -100.471983 kcal Electronic energy + Delta-G solvation = -26662.138205 eV Core-core repulsion = 22570.072742 eV Total energy + Delta-G solvation = -4092.065463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17159 -39.93338 -36.78135 -36.59126 -36.31101 -35.51527 -35.05166 -32.98383 -32.05967 -31.78394 -28.20539 -27.21145 -25.47004 -24.24415 -23.71771 -21.63289 -21.23533 -19.79379 -18.81558 -18.71932 -17.94219 -17.30006 -16.84148 -16.57602 -16.25415 -16.11862 -15.46101 -15.12362 -14.78387 -14.65922 -14.42886 -14.01559 -13.83029 -13.67690 -13.55262 -13.22116 -13.10805 -12.47665 -12.06779 -11.97272 -11.84524 -11.41982 -11.30485 -11.27894 -11.17076 -11.04576 -10.91121 -10.61129 -10.48088 -10.40998 -10.14663 -9.86027 -9.76909 -9.61033 -9.34241 -8.98469 -8.57718 -8.12049 -6.15750 -4.26246 -0.01498 0.79652 1.02599 2.05040 2.47354 3.21185 3.32579 3.34449 3.41562 3.57583 3.76925 4.21908 4.34725 4.36724 4.39338 4.51960 4.73893 4.80889 4.97905 5.11966 5.18761 5.24659 5.25291 5.41652 5.58423 5.60364 5.68785 5.90705 5.96100 5.97102 6.10067 6.22850 6.34056 6.57847 6.70276 6.95645 7.11487 7.22530 7.35745 7.37183 7.51249 7.79096 8.18429 8.79305 9.45196 10.91836 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.002603 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.293889 B =10752.249007 C =11150.117972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.083 3.917 3 Si 0.890 3.110 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.554 4.554 11 S 2.606 3.394 12 O -0.944 6.944 13 O -0.971 6.971 14 N -1.127 6.127 15 C 0.161 3.839 16 C 0.161 3.839 17 C -0.168 4.168 18 C -0.010 4.010 19 C -0.188 4.188 20 C 0.536 3.464 21 O -0.513 6.513 22 O -0.509 6.509 23 C 0.164 3.836 24 N -0.472 5.472 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.264 0.736 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.410 0.590 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.418 0.582 36 H 0.174 0.826 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.187 -11.910 -15.058 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.122 4.122 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.041 3.959 10 C -0.687 4.687 11 S 2.703 3.297 12 O -0.934 6.934 13 O -0.961 6.961 14 N -0.883 5.883 15 C 0.034 3.966 16 C 0.023 3.977 17 C -0.188 4.188 18 C -0.035 4.035 19 C -0.191 4.191 20 C 0.380 3.620 21 O -0.402 6.402 22 O -0.322 6.322 23 C 0.005 3.995 24 N -0.180 5.180 25 C -0.246 4.246 26 C -0.180 4.180 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.119 0.881 30 H 0.242 0.758 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.277 0.723 36 H 0.191 0.809 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.897 -10.836 -14.537 18.545 hybrid contribution -1.275 -0.472 -0.658 1.510 sum -5.171 -11.307 -15.195 19.634 Atomic orbital electron populations 1.69957 1.06029 1.27326 1.47735 1.24941 0.94813 0.99212 0.93254 0.86655 0.79939 0.82371 0.79314 1.19378 1.21144 1.19916 1.20496 0.93720 0.88593 1.52619 0.91357 1.18268 0.99025 0.94335 0.84270 1.29991 1.16467 1.08533 1.13722 1.05259 0.76479 0.73766 0.74150 1.93551 1.74708 1.50746 1.74345 1.93513 1.65262 1.59540 1.77801 1.56010 1.62246 1.22494 1.47509 1.20210 0.94744 0.95320 0.86338 1.21659 0.89505 0.92541 0.93986 1.22101 0.99522 0.97839 0.99381 1.21747 0.96842 0.94549 0.90408 1.20128 1.01026 1.04021 0.93966 1.20594 0.79284 0.79001 0.83168 1.90906 1.30057 1.37440 1.81782 1.84545 1.52736 1.67595 1.27276 1.23308 0.93364 0.87930 0.94894 1.67711 1.28817 1.21590 0.99914 1.23204 0.98698 0.96034 1.06626 1.22555 0.92559 1.01033 1.01858 0.92662 0.84743 0.88119 0.75804 0.89428 0.87649 0.82925 0.83077 0.72321 0.80922 0.90662 0.89519 0.89582 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.39 12.98 55.43 0.72 -22.67 16 2 C 0.08 2.21 5.38 -17.82 -0.10 2.12 16 3 Si 0.89 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.84 8.18 -34.44 -0.28 -14.12 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C 0.04 1.02 1.32 -155.65 -0.21 0.82 16 10 C -0.55 -10.89 5.93 37.16 0.22 -10.67 16 11 S 2.61 50.42 5.19 -107.50 -0.56 49.87 16 12 O -0.94 -21.96 17.16 -57.54 -0.99 -22.94 16 13 O -0.97 -20.74 18.08 -57.54 -1.04 -21.78 16 14 N -1.13 -15.86 5.88 -11.66 -0.07 -15.93 16 15 C 0.16 1.99 6.43 -5.20 -0.03 1.96 16 16 C 0.16 1.79 6.18 -82.51 -0.51 1.28 16 17 C -0.17 -1.42 9.70 -39.50 -0.38 -1.81 16 18 C -0.01 -0.08 9.72 -38.85 -0.38 -0.46 16 19 C -0.19 -1.69 5.89 -104.83 -0.62 -2.31 16 20 C 0.54 4.63 8.28 34.61 0.29 4.92 16 21 O -0.51 -5.73 17.21 -19.24 -0.33 -6.06 16 22 O -0.51 -2.91 12.71 -40.52 -0.51 -3.43 16 23 C 0.16 1.58 10.79 -17.12 -0.18 1.40 16 24 N -0.47 -5.71 10.25 -9.13 -0.09 -5.80 16 25 C -0.21 -4.46 9.96 -26.69 -0.27 -4.72 16 26 C -0.14 -3.11 9.49 -26.69 -0.25 -3.36 16 27 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 28 H 0.13 2.69 8.14 -51.93 -0.42 2.27 16 29 H 0.10 1.62 8.09 -51.92 -0.42 1.20 16 30 H 0.41 4.98 8.61 -34.47 -0.30 4.69 16 31 H 0.09 0.84 8.04 -51.92 -0.42 0.42 16 32 H 0.11 1.47 7.69 -51.93 -0.40 1.07 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.15 1.05 7.74 -52.48 -0.41 0.64 16 35 H 0.42 0.54 9.11 45.56 0.42 0.95 16 36 H 0.17 1.29 7.62 -52.49 -0.40 0.89 16 37 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.09 2.02 8.14 -51.93 -0.42 1.59 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -35.85 369.39 -9.04 -44.88 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.01 Total: 7.26 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -2.70 Total: -24.97 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.56 Total: -44.40 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -2.87 Total: -54.22 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 50.42 SS G_CDS: -0.56 Total: 49.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.85 -9.04 -44.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.588 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds