Wall clock time and date at job start Sat Apr 11 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99611 * 2 1 4 4 H 1.48500 * 109.46909 * 266.06874 * 3 2 1 5 5 H 1.48498 * 109.47146 * 26.06848 * 3 2 1 6 6 H 1.48499 * 109.47322 * 146.06883 * 3 2 1 7 7 C 1.37874 * 120.00720 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99569 * 353.91490 * 7 2 1 9 9 C 1.50693 * 120.00412 * 173.91989 * 7 2 1 10 10 O 1.42906 * 110.64319 * 325.50712 * 9 7 2 11 11 C 1.55158 * 110.72290 * 88.64670 * 9 7 2 12 12 C 1.54912 * 101.58259 * 154.04229 * 11 9 7 13 13 N 1.47428 * 104.83331 * 322.99354 * 12 11 9 14 14 C 1.34776 * 125.64818 * 204.09199 * 13 12 11 15 15 O 1.21588 * 120.00033 * 180.02562 * 14 13 12 16 16 N 1.34775 * 119.99810 * 0.29704 * 14 13 12 17 17 C 1.46502 * 120.00019 * 179.72544 * 16 14 13 18 18 C 1.50697 * 109.47115 * 179.97438 * 17 16 14 19 19 C 1.33863 * 124.51587 * 89.72950 * 18 17 16 20 20 C 1.37413 * 115.10984 * 179.85381 * 19 18 17 21 21 C 1.36755 * 113.28786 * 0.41565 * 20 19 18 22 22 C 1.46392 * 125.46390 * 179.77486 * 21 20 19 23 23 O 1.21625 * 120.00188 * 0.02945 * 22 21 20 24 24 O 1.34902 * 119.99951 * 180.02562 * 22 21 20 25 25 S 1.70616 * 124.52042 * 270.02070 * 18 17 16 26 26 C 1.47026 * 108.70197 * 24.35321 * 13 12 11 27 27 H 0.96996 * 120.00438 * 0.02562 * 1 2 3 28 28 H 0.96703 * 113.99363 * 297.56230 * 10 9 7 29 29 H 1.09004 * 111.00396 * 35.97019 * 11 9 7 30 30 H 1.08997 * 111.03452 * 272.13419 * 11 9 7 31 31 H 1.09000 * 110.36912 * 204.15023 * 12 11 9 32 32 H 1.09002 * 110.36581 * 81.83027 * 12 11 9 33 33 H 0.96998 * 120.00061 * 359.72824 * 16 14 13 34 34 H 1.08996 * 109.46916 * 300.00034 * 17 16 14 35 35 H 1.08997 * 109.46737 * 59.99687 * 17 16 14 36 36 H 1.08002 * 122.44484 * 0.02562 * 19 18 17 37 37 H 1.07996 * 123.35860 * 180.17590 * 20 19 18 38 38 H 0.96695 * 116.99931 * 180.02562 * 24 22 21 39 39 H 1.09004 * 109.87830 * 118.13068 * 26 13 12 40 40 H 1.09000 * 109.88290 * 239.29706 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5796 1.9985 -1.3968 5 1 1.4073 2.6753 0.6152 6 1 3.5026 1.4658 0.7815 7 6 2.0047 -1.1939 0.0005 8 1 1.4692 -2.1266 0.1001 9 6 3.5052 -1.1976 -0.1377 10 8 3.9347 -0.1386 -0.9958 11 6 4.1849 -1.0872 1.2527 12 6 5.5508 -1.7676 0.9861 13 7 5.2465 -2.8764 0.0634 14 6 5.9836 -3.9939 -0.0919 15 8 5.6358 -4.8462 -0.8863 16 7 7.1034 -4.1693 0.6373 17 6 7.9015 -5.3868 0.4729 18 6 9.0916 -5.3357 1.3959 19 6 9.0982 -5.7993 2.6516 20 6 10.2904 -5.6566 3.3197 21 6 11.2608 -5.0506 2.5705 22 6 12.6243 -4.7626 3.0191 23 8 12.9720 -5.0689 4.1436 24 8 13.4951 -4.1576 2.1851 25 16 10.6083 -4.6728 0.9820 26 6 4.0089 -2.5582 -0.6639 27 1 -0.4850 0.8400 -0.0004 28 1 3.6061 -0.2094 -1.9025 29 1 3.6185 -1.6310 2.0088 30 1 4.3175 -0.0446 1.5417 31 1 5.9711 -2.1520 1.9155 32 1 6.2404 -1.0641 0.5194 33 1 7.3809 -3.4894 1.2711 34 1 7.2909 -6.2568 0.7145 35 1 8.2451 -5.4593 -0.5589 36 1 8.2305 -6.2550 3.1055 37 1 10.4446 -5.9863 4.3365 38 1 14.3840 -3.9885 2.5260 39 1 4.2137 -2.4919 -1.7325 40 1 3.2597 -3.3270 -0.4749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:55 Heat of formation + Delta-G solvation = -122.044172 kcal Electronic energy + Delta-G solvation = -26373.435526 eV Core-core repulsion = 22280.434623 eV Total energy + Delta-G solvation = -4093.000904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56355 -40.06283 -38.57367 -37.78579 -36.50280 -34.87207 -34.77283 -32.40288 -31.29440 -30.07042 -28.45873 -27.46746 -25.25839 -23.94368 -22.94282 -22.57113 -20.08297 -19.79201 -19.59973 -19.16160 -18.21166 -17.61667 -17.31621 -16.50519 -16.20971 -16.04959 -15.59629 -15.15018 -15.11193 -14.73327 -14.35406 -14.16350 -13.69346 -13.53646 -13.32324 -13.23261 -12.88193 -12.68462 -12.54828 -12.31675 -12.09333 -12.07438 -11.70762 -11.53358 -11.40249 -11.16517 -11.12431 -10.57113 -10.37309 -10.21630 -9.96137 -9.38316 -9.25496 -9.21332 -9.06449 -8.69163 -8.57987 -8.13261 -6.22815 -4.35248 -0.21233 0.90537 1.39389 1.66551 2.43173 2.48983 2.88765 3.39617 3.41262 3.48204 3.62381 4.11507 4.16561 4.44122 4.67061 4.70658 4.85823 4.97898 5.10472 5.17117 5.23844 5.37713 5.52782 5.56779 5.59244 5.71631 5.81202 5.81903 5.92241 6.05204 6.34963 6.45342 6.50122 6.61105 6.71462 7.01922 7.21261 7.33884 7.42755 8.08595 8.16842 8.59718 8.76257 8.79011 9.37753 10.86154 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021644 B = 0.002276 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.375474 B =12298.220541 C =12854.448809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.075 3.925 3 Si 0.946 3.054 4 H -0.290 1.290 5 H -0.324 1.324 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.219 3.781 10 O -0.564 6.564 11 C -0.121 4.121 12 C 0.098 3.902 13 N -0.626 5.626 14 C 0.721 3.279 15 O -0.595 6.595 16 N -0.748 5.748 17 C 0.209 3.791 18 C -0.213 4.213 19 C -0.136 4.136 20 C -0.039 4.039 21 C -0.272 4.272 22 C 0.560 3.440 23 O -0.507 6.507 24 O -0.513 6.513 25 S 0.276 5.724 26 C 0.112 3.888 27 H 0.267 0.733 28 H 0.373 0.627 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.419 0.581 39 H 0.058 0.942 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.231 -8.324 4.531 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.130 4.130 3 Si 0.781 3.219 4 H -0.218 1.218 5 H -0.256 1.256 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.099 0.901 9 C 0.179 3.821 10 O -0.372 6.372 11 C -0.159 4.159 12 C -0.025 4.025 13 N -0.363 5.363 14 C 0.422 3.578 15 O -0.474 6.474 16 N -0.407 5.407 17 C 0.083 3.917 18 C -0.334 4.334 19 C -0.167 4.167 20 C -0.073 4.073 21 C -0.391 4.391 22 C 0.403 3.597 23 O -0.397 6.397 24 O -0.325 6.325 25 S 0.547 5.453 26 C -0.011 4.011 27 H 0.077 0.923 28 H 0.222 0.778 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.278 0.722 39 H 0.076 0.924 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 24.417 -8.219 3.260 25.969 hybrid contribution 0.180 0.351 1.447 1.499 sum 24.597 -7.868 4.707 26.250 Atomic orbital electron populations 1.69960 1.06828 1.27843 1.47514 1.25115 0.94880 1.00428 0.92624 0.85784 0.77869 0.80129 0.78140 1.21786 1.25567 1.19386 1.21170 0.88330 0.95468 1.54061 0.90100 1.20115 0.93965 0.81394 0.86662 1.86123 1.76602 1.49897 1.24627 1.23117 0.92921 1.01078 0.98786 1.22382 0.99535 0.88624 0.91935 1.47701 1.26908 1.18082 1.43628 1.15380 0.79556 0.81718 0.81106 1.90909 1.72324 1.43710 1.40418 1.45130 1.26675 1.22756 1.46099 1.19480 0.86897 0.88524 0.96751 1.24589 1.01907 1.06603 1.00274 1.20069 0.99377 1.03799 0.93487 1.20800 0.90526 0.95031 1.00932 1.23563 0.96517 1.17086 1.01912 1.19298 0.84236 0.73864 0.82261 1.90961 1.78111 1.50251 1.20328 1.84593 1.27376 1.73138 1.47410 1.83441 1.00047 1.52415 1.09379 1.22763 0.83478 0.99659 0.95194 0.92344 0.77842 0.89652 0.89823 0.92256 0.91793 0.76835 0.89239 0.90222 0.82918 0.82491 0.72162 0.92377 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.95 22.38 24.83 -169.99 -4.22 18.16 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.32 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.09 5.19 56.52 0.29 -5.80 16 7 C -0.55 -14.25 8.82 -34.45 -0.30 -14.55 16 8 H 0.08 2.30 7.81 -52.48 -0.41 1.89 16 9 C 0.22 4.64 0.68 -89.93 -0.06 4.58 16 10 O -0.56 -11.63 8.75 -35.23 -0.31 -11.94 16 11 C -0.12 -2.26 5.88 -24.58 -0.14 -2.40 16 12 C 0.10 1.50 6.57 -2.53 -0.02 1.49 16 13 N -0.63 -10.91 3.33 -176.22 -0.59 -11.50 16 14 C 0.72 12.20 8.49 -86.92 -0.74 11.46 16 15 O -0.59 -12.17 16.67 5.29 0.09 -12.08 16 16 N -0.75 -9.14 5.51 -66.42 -0.37 -9.51 16 17 C 0.21 2.09 6.10 -5.19 -0.03 2.06 16 18 C -0.21 -1.72 5.65 -35.85 -0.20 -1.92 16 19 C -0.14 -1.00 9.99 -41.42 -0.41 -1.42 16 20 C -0.04 -0.30 10.01 -40.42 -0.40 -0.70 16 21 C -0.27 -2.30 6.45 -36.84 -0.24 -2.54 16 22 C 0.56 4.97 8.30 34.01 0.28 5.25 16 23 O -0.51 -5.81 17.63 -19.36 -0.34 -6.15 16 24 O -0.51 -3.14 13.29 -41.05 -0.55 -3.68 16 25 S 0.28 2.09 22.87 -107.50 -2.46 -0.37 16 26 C 0.11 2.22 6.22 -3.05 -0.02 2.20 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.37 6.87 8.97 45.56 0.41 7.28 16 29 H 0.08 1.61 8.04 -51.93 -0.42 1.19 16 30 H 0.08 1.60 6.23 -51.93 -0.32 1.27 16 31 H 0.06 0.73 7.29 -51.93 -0.38 0.35 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 4.16 6.94 -40.82 -0.28 3.87 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.42 0.63 9.11 45.56 0.42 1.05 16 39 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 40 H 0.07 1.57 7.66 -51.93 -0.40 1.18 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -34.46 353.79 -8.18 -42.64 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.16 Total: 8.63 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.39 Total: 5.43 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.18 Total: -45.98 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.11 Total: -33.85 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.22 Total: 18.16 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.46 Total: -0.37 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.46 -8.18 -42.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.403 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds