Wall clock time and date at job start Sat Apr 11 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99611 * 2 1 4 4 H 1.48500 * 109.46909 * 266.06874 * 3 2 1 5 5 H 1.48498 * 109.47146 * 26.06848 * 3 2 1 6 6 H 1.48499 * 109.47322 * 146.06883 * 3 2 1 7 7 C 1.37874 * 120.00720 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99569 * 353.91490 * 7 2 1 9 9 C 1.50693 * 120.00412 * 173.91989 * 7 2 1 10 10 O 1.42906 * 110.64319 * 325.50712 * 9 7 2 11 11 C 1.55158 * 110.72290 * 88.64670 * 9 7 2 12 12 C 1.54912 * 101.58259 * 154.04229 * 11 9 7 13 13 N 1.47428 * 104.83331 * 322.99354 * 12 11 9 14 14 C 1.34776 * 125.64818 * 204.09199 * 13 12 11 15 15 O 1.21588 * 120.00033 * 180.02562 * 14 13 12 16 16 N 1.34775 * 119.99810 * 0.29704 * 14 13 12 17 17 C 1.46502 * 120.00019 * 179.72544 * 16 14 13 18 18 C 1.50697 * 109.47115 * 179.97438 * 17 16 14 19 19 C 1.33863 * 124.51587 * 89.72950 * 18 17 16 20 20 C 1.37413 * 115.10984 * 179.85381 * 19 18 17 21 21 C 1.36755 * 113.28786 * 0.41565 * 20 19 18 22 22 C 1.46392 * 125.46390 * 179.77486 * 21 20 19 23 23 O 1.21625 * 120.00188 * 0.02945 * 22 21 20 24 24 O 1.34902 * 119.99951 * 180.02562 * 22 21 20 25 25 S 1.70616 * 124.52042 * 270.02070 * 18 17 16 26 26 C 1.47026 * 108.70197 * 24.35321 * 13 12 11 27 27 H 0.96996 * 120.00438 * 0.02562 * 1 2 3 28 28 H 0.96703 * 113.99363 * 297.56230 * 10 9 7 29 29 H 1.09004 * 111.00396 * 35.97019 * 11 9 7 30 30 H 1.08997 * 111.03452 * 272.13419 * 11 9 7 31 31 H 1.09000 * 110.36912 * 204.15023 * 12 11 9 32 32 H 1.09002 * 110.36581 * 81.83027 * 12 11 9 33 33 H 0.96998 * 120.00061 * 359.72824 * 16 14 13 34 34 H 1.08996 * 109.46916 * 300.00034 * 17 16 14 35 35 H 1.08997 * 109.46737 * 59.99687 * 17 16 14 36 36 H 1.08002 * 122.44484 * 0.02562 * 19 18 17 37 37 H 1.07996 * 123.35860 * 180.17590 * 20 19 18 38 38 H 0.96695 * 116.99931 * 180.02562 * 24 22 21 39 39 H 1.09004 * 109.87830 * 118.13068 * 26 13 12 40 40 H 1.09000 * 109.88290 * 239.29706 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5796 1.9985 -1.3968 5 1 1.4073 2.6753 0.6152 6 1 3.5026 1.4658 0.7815 7 6 2.0047 -1.1939 0.0005 8 1 1.4692 -2.1266 0.1001 9 6 3.5052 -1.1976 -0.1377 10 8 3.9347 -0.1386 -0.9958 11 6 4.1849 -1.0872 1.2527 12 6 5.5508 -1.7676 0.9861 13 7 5.2465 -2.8764 0.0634 14 6 5.9836 -3.9939 -0.0919 15 8 5.6358 -4.8462 -0.8863 16 7 7.1034 -4.1693 0.6373 17 6 7.9015 -5.3868 0.4729 18 6 9.0916 -5.3357 1.3959 19 6 9.0982 -5.7993 2.6516 20 6 10.2904 -5.6566 3.3197 21 6 11.2608 -5.0506 2.5705 22 6 12.6243 -4.7626 3.0191 23 8 12.9720 -5.0689 4.1436 24 8 13.4951 -4.1576 2.1851 25 16 10.6083 -4.6728 0.9820 26 6 4.0089 -2.5582 -0.6639 27 1 -0.4850 0.8400 -0.0004 28 1 3.6061 -0.2094 -1.9025 29 1 3.6185 -1.6310 2.0088 30 1 4.3175 -0.0446 1.5417 31 1 5.9711 -2.1520 1.9155 32 1 6.2404 -1.0641 0.5194 33 1 7.3809 -3.4894 1.2711 34 1 7.2909 -6.2568 0.7145 35 1 8.2451 -5.4593 -0.5589 36 1 8.2305 -6.2550 3.1055 37 1 10.4446 -5.9863 4.3365 38 1 14.3840 -3.9885 2.5260 39 1 4.2137 -2.4919 -1.7325 40 1 3.2597 -3.3270 -0.4749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:54 Heat of formation + Delta-G solvation = -149.803981 kcal Electronic energy + Delta-G solvation = -26374.639282 eV Core-core repulsion = 22280.434623 eV Total energy + Delta-G solvation = -4094.204659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40609 -41.17819 -39.60355 -38.92059 -37.11890 -36.34925 -35.89105 -34.43925 -32.36686 -31.31512 -29.95776 -28.40879 -26.85813 -24.84869 -23.96455 -23.50961 -21.57782 -21.15202 -20.27733 -19.95022 -19.54703 -19.06190 -18.16155 -17.42253 -17.16726 -16.95543 -16.78271 -16.77169 -16.56095 -15.87548 -15.49001 -15.19387 -15.11269 -14.55491 -14.47629 -14.15624 -14.08156 -14.00780 -13.83596 -13.38724 -13.25936 -13.18187 -13.04837 -12.74658 -12.68320 -12.31358 -12.20795 -12.05786 -11.84908 -11.81222 -11.39461 -11.20659 -10.62353 -10.40908 -10.33167 -10.04029 -9.63606 -9.48664 -8.32576 -6.47431 -0.83975 0.30580 0.80080 1.02355 1.53723 1.55425 1.63567 1.75890 1.87870 1.98396 2.08207 2.46253 2.99258 3.02003 3.41238 3.51898 3.82857 4.03538 4.08204 4.13110 4.30291 4.31127 4.45265 4.49880 4.58502 4.60771 4.85086 4.96055 4.97368 5.01468 5.14399 5.22048 5.23982 5.32680 5.42952 5.44867 5.53952 6.02589 6.06248 6.59948 6.84642 6.92832 6.96307 7.30620 7.47615 8.80631 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021644 B = 0.002276 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.375474 B =12298.220541 C =12854.448809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.024 3.976 3 Si 1.007 2.993 4 H -0.282 1.282 5 H -0.337 1.337 6 H -0.247 1.247 7 C -0.550 4.550 8 H 0.038 0.962 9 C 0.219 3.781 10 O -0.561 6.561 11 C -0.121 4.121 12 C 0.107 3.893 13 N -0.630 5.630 14 C 0.719 3.281 15 O -0.635 6.635 16 N -0.729 5.729 17 C 0.210 3.790 18 C -0.219 4.219 19 C -0.127 4.127 20 C -0.040 4.040 21 C -0.287 4.287 22 C 0.564 3.436 23 O -0.540 6.540 24 O -0.507 6.507 25 S 0.299 5.701 26 C 0.121 3.879 27 H 0.267 0.733 28 H 0.382 0.618 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.409 0.591 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.438 0.562 39 H 0.058 0.942 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.377 -7.648 5.117 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.176 4.176 3 Si 0.839 3.161 4 H -0.208 1.208 5 H -0.270 1.270 6 H -0.172 1.172 7 C -0.588 4.588 8 H 0.056 0.944 9 C 0.178 3.822 10 O -0.370 6.370 11 C -0.159 4.159 12 C -0.015 4.015 13 N -0.367 5.367 14 C 0.421 3.579 15 O -0.517 6.517 16 N -0.387 5.387 17 C 0.085 3.915 18 C -0.340 4.340 19 C -0.159 4.159 20 C -0.074 4.074 21 C -0.406 4.406 22 C 0.408 3.592 23 O -0.432 6.432 24 O -0.322 6.322 25 S 0.570 5.430 26 C -0.003 4.003 27 H 0.076 0.924 28 H 0.232 0.768 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.246 0.754 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.184 0.816 37 H 0.182 0.818 38 H 0.301 0.699 39 H 0.077 0.923 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 27.649 -7.539 3.851 28.916 hybrid contribution -0.776 0.034 1.233 1.457 sum 26.874 -7.505 5.084 28.361 Atomic orbital electron populations 1.70093 1.08720 1.28605 1.50181 1.25920 0.95338 1.03872 0.92453 0.84794 0.76993 0.75637 0.78687 1.20832 1.26979 1.17173 1.21396 0.91120 0.93606 1.52683 0.94403 1.19950 0.91322 0.82383 0.88512 1.86079 1.76186 1.49400 1.25299 1.23021 0.94656 1.01725 0.96509 1.22450 0.97685 0.88046 0.93284 1.47618 1.26174 1.19009 1.43876 1.15508 0.80330 0.80936 0.81143 1.90885 1.73542 1.44953 1.42290 1.44988 1.25088 1.23646 1.44937 1.19516 0.87232 0.87445 0.97297 1.24387 1.01548 1.07768 1.00266 1.20193 0.99658 1.02985 0.93092 1.20946 0.90444 0.94711 1.01324 1.23739 0.96690 1.17534 1.02594 1.19378 0.84602 0.73299 0.81878 1.90948 1.78784 1.51812 1.21686 1.84558 1.28505 1.72272 1.46842 1.83366 0.99331 1.51774 1.08518 1.22374 0.84309 0.98088 0.95552 0.92398 0.76794 0.90343 0.89491 0.88401 0.90093 0.75392 0.89318 0.90310 0.81620 0.81806 0.69915 0.92327 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 13.96 21.45 0.30 -55.90 16 2 C 0.02 1.31 5.46 84.65 0.46 1.77 16 3 Si 1.01 45.47 24.83 68.60 1.70 47.17 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.34 -15.93 7.11 99.48 0.71 -15.22 16 6 H -0.25 -10.22 5.19 99.48 0.52 -9.70 16 7 C -0.55 -28.98 8.82 25.60 0.23 -28.76 16 8 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 9 C 0.22 9.06 0.68 -10.35 -0.01 9.06 16 10 O -0.56 -21.74 8.75 -148.98 -1.30 -23.05 16 11 C -0.12 -4.23 5.88 31.99 0.19 -4.04 16 12 C 0.11 2.87 6.57 86.86 0.57 3.44 16 13 N -0.63 -20.66 3.33 -829.70 -2.76 -23.42 16 14 C 0.72 22.99 8.49 179.06 1.52 24.51 16 15 O -0.63 -25.55 16.67 -3.99 -0.07 -25.61 16 16 N -0.73 -15.71 5.51 -482.31 -2.66 -18.36 16 17 C 0.21 3.71 6.10 85.63 0.52 4.24 16 18 C -0.22 -2.94 5.65 24.69 0.14 -2.80 16 19 C -0.13 -1.53 9.99 21.08 0.21 -1.32 16 20 C -0.04 -0.53 10.01 21.73 0.22 -0.31 16 21 C -0.29 -4.22 6.45 24.05 0.16 -4.06 16 22 C 0.56 9.01 8.30 69.94 0.58 9.59 16 23 O -0.54 -11.76 17.63 19.43 0.34 -11.42 16 24 O -0.51 -5.09 13.29 -58.17 -0.77 -5.86 16 25 S 0.30 3.74 22.87 -56.49 -1.29 2.45 16 26 C 0.12 4.77 6.22 86.73 0.54 5.31 16 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.38 13.34 8.97 -74.06 -0.66 12.68 16 29 H 0.08 2.84 8.04 -2.38 -0.02 2.82 16 30 H 0.09 3.01 6.23 -2.39 -0.01 2.99 16 31 H 0.10 1.92 7.29 -2.39 -0.02 1.90 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.41 6.91 6.94 -92.71 -0.64 6.27 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.44 0.38 9.11 -74.06 -0.67 -0.30 16 39 H 0.06 2.28 8.04 -2.38 -0.02 2.26 16 40 H 0.05 2.02 7.66 -2.39 -0.02 2.01 16 Total: -1.00 -75.98 353.79 -2.22 -78.20 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -1.04 Total: 19.17 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 5.32 Total: 16.62 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -5.12 Total: -97.68 kcal Atomic # 8 Polarization: -64.14 SS G_CDS: -1.80 Total: -65.94 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.70 Total: 47.17 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.29 Total: 2.45 kcal Total: -75.98 -2.22 -78.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.604 kcal (2) G-P(sol) polarization free energy of solvation -75.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds