Wall clock time and date at job start Sat Apr 11 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00018 * 2 1 4 4 H 1.48507 * 109.46675 * 269.99529 * 3 2 1 5 5 H 1.48502 * 109.47148 * 29.99454 * 3 2 1 6 6 H 1.48499 * 109.47254 * 149.99824 * 3 2 1 7 7 C 1.37877 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.46166 * 179.97438 * 9 7 2 11 11 C 1.53188 * 109.30745 * 181.37397 * 10 9 7 12 12 N 1.46922 * 108.77878 * 305.36075 * 11 10 9 13 13 S 1.65598 * 120.63340 * 233.59016 * 12 11 10 14 14 O 1.42102 * 106.40194 * 336.45892 * 13 12 11 15 15 O 1.42104 * 106.40156 * 203.54257 * 13 12 11 16 16 C 1.76197 * 107.21870 * 90.00106 * 13 12 11 17 17 C 1.38618 * 120.32096 * 270.01955 * 16 13 12 18 18 C 1.38589 * 118.48998 * 179.97438 * 17 16 13 19 19 C 1.39351 * 119.05589 * 0.02562 * 18 17 16 20 20 C 1.48071 * 119.72468 * 180.02562 * 19 18 17 21 21 O 1.21427 * 120.00527 * 359.97438 * 20 19 18 22 22 O 1.34678 * 119.99518 * 180.02562 * 20 19 18 23 23 N 1.32746 * 120.54889 * 359.97438 * 19 18 17 24 24 C 1.31507 * 121.63762 * 359.97438 * 23 19 18 25 25 C 1.46924 * 118.73573 * 53.86882 * 12 11 10 26 26 C 1.53042 * 109.44601 * 300.06421 * 9 7 2 27 27 H 0.97000 * 120.00026 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.45557 * 60.02283 * 9 7 2 29 29 H 1.08997 * 109.49385 * 61.42405 * 10 9 7 30 30 H 1.08999 * 109.52203 * 301.33909 * 10 9 7 31 31 H 1.09006 * 109.58137 * 185.57881 * 11 10 9 32 32 H 1.08994 * 109.70816 * 65.22949 * 11 10 9 33 33 H 1.08000 * 120.75790 * 0.02562 * 17 16 13 34 34 H 1.08004 * 120.47441 * 179.97438 * 18 17 16 35 35 H 0.96701 * 116.99918 * 180.02562 * 22 20 19 36 36 H 1.08004 * 119.54293 * 180.27514 * 24 23 19 37 37 H 1.08998 * 109.59000 * 65.92085 * 25 12 11 38 38 H 1.09000 * 109.58997 * 186.35243 * 25 12 11 39 39 H 1.08998 * 109.49902 * 298.56831 * 26 9 7 40 40 H 1.09001 * 109.50101 * 58.67317 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4767 -4.9866 -0.0341 12 7 0.5225 -5.0087 1.0829 13 16 0.5093 -6.2695 2.1564 14 8 1.0833 -7.3791 1.4792 15 8 -0.7914 -6.2960 2.7281 16 6 1.6181 -5.8550 3.4614 17 6 2.9561 -6.2086 3.3817 18 6 3.7947 -5.8631 4.4296 19 6 3.2665 -5.1765 5.5211 20 6 4.1492 -4.7996 6.6486 21 8 5.3281 -5.0891 6.6198 22 8 3.6443 -4.1365 7.7065 23 7 1.9786 -4.8568 5.5581 24 6 1.1613 -5.1716 4.5771 25 6 -0.4238 -3.8940 1.2257 26 6 0.3698 -2.5787 1.2492 27 1 -0.4850 0.8400 -0.0004 28 1 0.6252 -2.5571 -0.8900 29 1 2.8558 -3.6192 0.9029 30 1 2.8887 -3.5917 -0.8769 31 1 2.1752 -5.8174 0.0655 32 1 0.9374 -5.0738 -0.9773 33 1 3.3366 -6.7404 2.5222 34 1 4.8427 -6.1229 4.4010 35 1 4.2594 -3.9116 8.4180 36 1 0.1203 -4.8907 4.6404 37 1 -1.1152 -3.8913 0.3830 38 1 -0.9798 -4.0035 2.1568 39 1 0.9971 -2.5457 2.1400 40 1 -0.3228 -1.7371 1.2599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:59 Heat of formation + Delta-G solvation = -123.927020 kcal Electronic energy + Delta-G solvation = -27933.027187 eV Core-core repulsion = 23839.944637 eV Total energy + Delta-G solvation = -4093.082550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10022 -39.71029 -37.86738 -37.33101 -36.49993 -35.88986 -33.53399 -33.17262 -32.08901 -30.98465 -30.19350 -26.15568 -25.84364 -24.18052 -22.67273 -22.45779 -22.22329 -19.78630 -18.87018 -18.69466 -18.17856 -17.75854 -17.22292 -16.84587 -16.29290 -16.14747 -15.55037 -15.14756 -14.63357 -14.33355 -14.21349 -14.12678 -13.66837 -13.60128 -13.27230 -13.24972 -12.92901 -12.89044 -12.29540 -12.12239 -12.04563 -11.92557 -11.53564 -11.50824 -11.31193 -11.01681 -10.99044 -10.72093 -10.59535 -10.47937 -10.15857 -10.03652 -9.89700 -9.69656 -9.30994 -9.09722 -8.52584 -8.35621 -6.07970 -4.14383 -0.29938 0.37093 0.78309 1.87988 2.41901 2.92443 3.24398 3.29082 3.32143 3.34672 3.70128 3.83475 4.04596 4.36362 4.43196 4.55039 4.62214 4.82951 5.00082 5.22031 5.24300 5.33767 5.46582 5.59990 5.76256 5.95669 5.99871 6.00688 6.02895 6.19699 6.29710 6.30514 6.59321 6.76247 6.95036 7.05732 7.13824 7.30729 7.53703 7.63101 7.86117 7.99564 8.34202 8.89022 9.51216 10.97436 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.004521 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.209874 B = 6191.648319 C = 8135.247499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.051 3.949 10 C -0.125 4.125 11 C 0.120 3.880 12 N -0.983 5.983 13 S 2.692 3.308 14 O -0.956 6.956 15 O -0.951 6.951 16 C -0.703 4.703 17 C 0.023 3.977 18 C -0.127 4.127 19 C 0.135 3.865 20 C 0.543 3.457 21 O -0.499 6.499 22 O -0.487 6.487 23 N -0.445 5.445 24 C 0.199 3.801 25 C 0.115 3.885 26 C -0.124 4.124 27 H 0.261 0.739 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.415 0.585 36 H 0.183 0.817 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 -11.573 8.619 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.032 3.968 10 C -0.164 4.164 11 C -0.004 4.004 12 N -0.824 5.824 13 S 2.778 3.222 14 O -0.946 6.946 15 O -0.941 6.941 16 C -0.788 4.788 17 C -0.004 4.004 18 C -0.147 4.147 19 C -0.001 4.001 20 C 0.384 3.616 21 O -0.387 6.387 22 O -0.297 6.297 23 N -0.156 5.156 24 C 0.038 3.962 25 C -0.009 4.009 26 C -0.164 4.164 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.181 0.819 34 H 0.178 0.822 35 H 0.274 0.726 36 H 0.200 0.800 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.916 -11.920 9.029 15.235 hybrid contribution 1.788 1.253 0.220 2.194 sum 4.703 -10.667 9.249 14.881 Atomic orbital electron populations 1.69825 1.05806 1.26543 1.50666 1.24944 0.94851 0.99008 0.95048 0.86649 0.79882 0.83666 0.78110 1.20688 1.21225 1.20095 1.21187 0.92858 0.90619 1.50563 0.92823 1.18590 0.92574 0.91457 0.94176 1.22027 0.98907 0.94559 1.00898 1.21609 0.90867 0.99391 0.88576 1.57608 1.46248 1.39367 1.39170 1.02198 0.73611 0.73469 0.72898 1.93569 1.79561 1.48849 1.72582 1.93585 1.35556 1.86296 1.78664 1.32733 1.12845 1.13246 1.19946 1.21399 0.90600 0.90846 0.97520 1.22180 1.02448 0.97347 0.92764 1.20297 0.91001 0.96316 0.92507 1.20433 0.85246 0.74373 0.81511 1.90926 1.16671 1.51758 1.79307 1.84694 1.46328 1.68775 1.29939 1.67802 1.02755 1.17032 1.28041 1.22691 0.99893 0.87684 0.85919 1.21915 0.90616 0.86680 1.01642 1.22117 1.00013 0.94844 0.99402 0.92901 0.95212 0.93156 0.91957 0.90648 0.90888 0.81866 0.82162 0.72579 0.79972 0.90942 0.90700 0.94435 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 11.30 55.43 0.63 -23.09 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.07 8.56 -34.44 -0.29 -13.36 16 8 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 9 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 10 C -0.12 -2.22 5.30 -26.61 -0.14 -2.36 16 11 C 0.12 1.78 6.37 -3.71 -0.02 1.76 16 12 N -0.98 -14.85 3.28 -113.27 -0.37 -15.22 16 13 S 2.69 37.80 5.70 -107.50 -0.61 37.19 16 14 O -0.96 -14.45 16.07 -57.17 -0.92 -15.36 16 15 O -0.95 -14.94 16.01 -57.17 -0.92 -15.86 16 16 C -0.70 -9.09 6.00 -39.31 -0.24 -9.32 16 17 C 0.02 0.26 9.64 -39.31 -0.38 -0.12 16 18 C -0.13 -1.43 9.63 -39.04 -0.38 -1.81 16 19 C 0.14 1.76 6.75 -83.02 -0.56 1.20 16 20 C 0.54 6.50 8.32 34.76 0.29 6.79 16 21 O -0.50 -6.59 17.11 -19.21 -0.33 -6.92 16 22 O -0.49 -4.74 13.24 -40.43 -0.54 -5.27 16 23 N -0.44 -6.24 10.12 -9.81 -0.10 -6.34 16 24 C 0.20 2.65 10.68 -17.56 -0.19 2.47 16 25 C 0.12 1.92 6.41 -3.48 -0.02 1.90 16 26 C -0.12 -2.56 5.17 -26.38 -0.14 -2.70 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 0.94 7.13 -51.93 -0.37 0.57 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.16 1.46 7.70 -52.49 -0.40 1.06 16 34 H 0.16 1.47 7.64 -52.48 -0.40 1.07 16 35 H 0.42 1.78 9.11 45.56 0.42 2.19 16 36 H 0.18 2.11 7.63 -52.48 -0.40 1.71 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.12 7.12 -51.93 -0.37 0.75 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.11 2.47 6.03 -51.93 -0.31 2.16 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -32.27 351.15 -9.16 -41.43 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -3.92 Total: 1.84 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -2.35 Total: -13.10 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.16 Total: -44.65 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -2.70 Total: -43.41 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 37.80 SS G_CDS: -0.61 Total: 37.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.27 -9.16 -41.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.496 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds