Wall clock time and date at job start Sat Apr 11 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00018 * 2 1 4 4 H 1.48507 * 109.46675 * 269.99529 * 3 2 1 5 5 H 1.48502 * 109.47148 * 29.99454 * 3 2 1 6 6 H 1.48499 * 109.47254 * 149.99824 * 3 2 1 7 7 C 1.37877 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.46166 * 179.97438 * 9 7 2 11 11 C 1.53188 * 109.30745 * 181.37397 * 10 9 7 12 12 N 1.46922 * 108.77878 * 305.36075 * 11 10 9 13 13 S 1.65598 * 120.63340 * 233.59016 * 12 11 10 14 14 O 1.42102 * 106.40194 * 336.45892 * 13 12 11 15 15 O 1.42104 * 106.40156 * 203.54257 * 13 12 11 16 16 C 1.76197 * 107.21870 * 90.00106 * 13 12 11 17 17 C 1.38618 * 120.32096 * 270.01955 * 16 13 12 18 18 C 1.38589 * 118.48998 * 179.97438 * 17 16 13 19 19 C 1.39351 * 119.05589 * 0.02562 * 18 17 16 20 20 C 1.48071 * 119.72468 * 180.02562 * 19 18 17 21 21 O 1.21427 * 120.00527 * 359.97438 * 20 19 18 22 22 O 1.34678 * 119.99518 * 180.02562 * 20 19 18 23 23 N 1.32746 * 120.54889 * 359.97438 * 19 18 17 24 24 C 1.31507 * 121.63762 * 359.97438 * 23 19 18 25 25 C 1.46924 * 118.73573 * 53.86882 * 12 11 10 26 26 C 1.53042 * 109.44601 * 300.06421 * 9 7 2 27 27 H 0.97000 * 120.00026 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.45557 * 60.02283 * 9 7 2 29 29 H 1.08997 * 109.49385 * 61.42405 * 10 9 7 30 30 H 1.08999 * 109.52203 * 301.33909 * 10 9 7 31 31 H 1.09006 * 109.58137 * 185.57881 * 11 10 9 32 32 H 1.08994 * 109.70816 * 65.22949 * 11 10 9 33 33 H 1.08000 * 120.75790 * 0.02562 * 17 16 13 34 34 H 1.08004 * 120.47441 * 179.97438 * 18 17 16 35 35 H 0.96701 * 116.99918 * 180.02562 * 22 20 19 36 36 H 1.08004 * 119.54293 * 180.27514 * 24 23 19 37 37 H 1.08998 * 109.59000 * 65.92085 * 25 12 11 38 38 H 1.09000 * 109.58997 * 186.35243 * 25 12 11 39 39 H 1.08998 * 109.49902 * 298.56831 * 26 9 7 40 40 H 1.09001 * 109.50101 * 58.67317 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4767 -4.9866 -0.0341 12 7 0.5225 -5.0087 1.0829 13 16 0.5093 -6.2695 2.1564 14 8 1.0833 -7.3791 1.4792 15 8 -0.7914 -6.2960 2.7281 16 6 1.6181 -5.8550 3.4614 17 6 2.9561 -6.2086 3.3817 18 6 3.7947 -5.8631 4.4296 19 6 3.2665 -5.1765 5.5211 20 6 4.1492 -4.7996 6.6486 21 8 5.3281 -5.0891 6.6198 22 8 3.6443 -4.1365 7.7065 23 7 1.9786 -4.8568 5.5581 24 6 1.1613 -5.1716 4.5771 25 6 -0.4238 -3.8940 1.2257 26 6 0.3698 -2.5787 1.2492 27 1 -0.4850 0.8400 -0.0004 28 1 0.6252 -2.5571 -0.8900 29 1 2.8558 -3.6192 0.9029 30 1 2.8887 -3.5917 -0.8769 31 1 2.1752 -5.8174 0.0655 32 1 0.9374 -5.0738 -0.9773 33 1 3.3366 -6.7404 2.5222 34 1 4.8427 -6.1229 4.4010 35 1 4.2594 -3.9116 8.4180 36 1 0.1203 -4.8907 4.6404 37 1 -1.1152 -3.8913 0.3830 38 1 -0.9798 -4.0035 2.1568 39 1 0.9971 -2.5457 2.1400 40 1 -0.3228 -1.7371 1.2599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:59 Heat of formation + Delta-G solvation = -147.204957 kcal Electronic energy + Delta-G solvation = -27934.036594 eV Core-core repulsion = 23839.944637 eV Total energy + Delta-G solvation = -4094.091957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01419 -40.61852 -39.28845 -38.50215 -37.34689 -37.06458 -35.27982 -34.11839 -33.02726 -32.62499 -31.64746 -27.62059 -27.08120 -25.11974 -24.17533 -23.91256 -23.16790 -21.16782 -20.00677 -19.68857 -19.21723 -18.86190 -18.44318 -18.08606 -17.80650 -17.04863 -16.72823 -16.50483 -16.04739 -15.43024 -15.25733 -15.18205 -14.91695 -14.86083 -14.55672 -14.47932 -14.33189 -14.14280 -13.70818 -13.50485 -13.29054 -12.94157 -12.82623 -12.76638 -12.62687 -12.52551 -12.37645 -12.23877 -12.05459 -11.85301 -11.58215 -11.39156 -11.05789 -10.91635 -10.81752 -10.75981 -10.35343 -9.85818 -8.04879 -6.17079 -1.26570 -0.74251 -0.13004 0.95671 1.40302 1.43494 1.50597 1.60833 1.80874 2.31599 2.44759 2.61428 2.92441 3.01116 3.22310 3.56916 3.62646 3.72181 3.78380 3.92712 4.32972 4.38497 4.41492 4.46332 4.54798 4.61050 4.68865 4.77894 4.84777 4.97323 5.10284 5.17264 5.25056 5.33839 5.38494 5.57299 5.66240 5.73285 6.07681 6.23212 6.23395 6.44621 6.78667 6.94952 7.50718 8.98109 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.004521 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.209874 B = 6191.648319 C = 8135.247499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.048 0.952 9 C 0.044 3.956 10 C -0.118 4.118 11 C 0.121 3.879 12 N -0.986 5.986 13 S 2.714 3.286 14 O -0.961 6.961 15 O -0.968 6.968 16 C -0.708 4.708 17 C 0.026 3.974 18 C -0.122 4.122 19 C 0.117 3.883 20 C 0.548 3.452 21 O -0.516 6.516 22 O -0.488 6.488 23 N -0.465 5.465 24 C 0.187 3.813 25 C 0.124 3.876 26 C -0.116 4.116 27 H 0.259 0.741 28 H 0.004 0.996 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.192 0.808 34 H 0.183 0.817 35 H 0.437 0.563 36 H 0.192 0.808 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.031 0.969 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 -12.789 8.934 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.157 4.157 11 C -0.004 4.004 12 N -0.825 5.825 13 S 2.802 3.198 14 O -0.951 6.951 15 O -0.959 6.959 16 C -0.795 4.795 17 C -0.001 4.001 18 C -0.142 4.142 19 C -0.019 4.019 20 C 0.390 3.610 21 O -0.404 6.404 22 O -0.301 6.301 23 N -0.176 5.176 24 C 0.026 3.974 25 C 0.000 4.000 26 C -0.155 4.155 27 H 0.069 0.931 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.209 0.791 34 H 0.201 0.799 35 H 0.300 0.700 36 H 0.208 0.792 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.049 0.951 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.096 -13.136 9.347 16.634 hybrid contribution 1.466 1.643 0.179 2.209 sum 5.561 -11.493 9.527 15.931 Atomic orbital electron populations 1.69952 1.06752 1.26889 1.51553 1.25588 0.95567 1.01723 0.95235 0.85827 0.78786 0.80569 0.78036 1.20369 1.21244 1.19892 1.21597 0.92894 0.92373 1.49909 0.93375 1.18595 0.93219 0.92038 0.93621 1.21886 0.98135 0.94460 1.01175 1.21663 0.91154 0.98614 0.88933 1.57570 1.46121 1.38916 1.39889 1.01454 0.73145 0.72731 0.72436 1.93558 1.79642 1.48936 1.73011 1.93562 1.36991 1.86427 1.78875 1.32533 1.13423 1.14153 1.19378 1.21816 0.89871 0.90105 0.98301 1.22469 1.03508 0.96274 0.91972 1.20658 0.90958 0.96725 0.93515 1.20310 0.84796 0.74212 0.81716 1.90917 1.17138 1.52631 1.79752 1.84652 1.47221 1.68062 1.30199 1.67788 1.03435 1.17849 1.28565 1.22914 1.00444 0.87937 0.86122 1.21685 0.90365 0.85285 1.02686 1.21873 0.99328 0.96020 0.98311 0.93129 0.97833 0.93045 0.91515 0.87459 0.90230 0.79100 0.79941 0.69988 0.79153 0.90945 0.88913 0.95066 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.68 11.30 21.45 0.24 -49.43 16 2 C 0.02 0.93 5.30 84.65 0.45 1.38 16 3 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.53 -27.19 8.56 25.60 0.22 -26.97 16 8 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 9 C 0.04 1.95 2.06 -11.51 -0.02 1.93 16 10 C -0.12 -4.03 5.30 30.67 0.16 -3.86 16 11 C 0.12 3.30 6.37 86.36 0.55 3.85 16 12 N -0.99 -27.94 3.28 -512.29 -1.68 -29.62 16 13 S 2.71 70.21 5.70 -56.49 -0.32 69.88 16 14 O -0.96 -26.15 16.07 -128.00 -2.06 -28.20 16 15 O -0.97 -28.81 16.01 -128.00 -2.05 -30.86 16 16 C -0.71 -16.87 6.00 22.44 0.13 -16.73 16 17 C 0.03 0.51 9.64 22.44 0.22 0.73 16 18 C -0.12 -2.46 9.63 22.62 0.22 -2.25 16 19 C 0.12 2.88 6.75 41.88 0.28 3.16 16 20 C 0.55 12.35 8.32 70.43 0.59 12.93 16 21 O -0.52 -12.80 17.11 20.07 0.34 -12.45 16 22 O -0.49 -8.80 13.24 -55.88 -0.74 -9.54 16 23 N -0.46 -12.57 10.12 -184.94 -1.87 -14.44 16 24 C 0.19 4.77 10.68 84.82 0.91 5.68 16 25 C 0.12 4.05 6.41 86.51 0.55 4.61 16 26 C -0.12 -4.81 5.17 30.82 0.16 -4.65 16 27 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.11 2.28 7.13 -2.38 -0.02 2.27 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.19 2.65 7.70 -2.91 -0.02 2.63 16 34 H 0.18 2.81 7.64 -2.91 -0.02 2.78 16 35 H 0.44 3.00 9.11 -74.06 -0.67 2.32 16 36 H 0.19 4.29 7.63 -2.91 -0.02 4.27 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.09 2.68 7.12 -2.39 -0.02 2.66 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 3.51 6.03 -2.39 -0.01 3.50 16 Total: -1.00 -68.91 351.15 -1.27 -70.19 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.42 Total: 10.50 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.41 Total: -20.21 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -3.31 Total: -93.50 kcal Atomic # 8 Polarization: -76.56 SS G_CDS: -4.50 Total: -81.06 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 70.21 SS G_CDS: -0.32 Total: 69.88 kcal Total: -68.91 -1.27 -70.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.016 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds