Wall clock time and date at job start Sat Apr 11 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99877 * 2 1 4 4 H 1.48504 * 109.47406 * 269.99960 * 3 2 1 5 5 H 1.48500 * 109.47527 * 30.00069 * 3 2 1 6 6 H 1.48505 * 109.46936 * 149.99966 * 3 2 1 7 7 C 1.37878 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99976 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.49755 * 60.06749 * 9 7 2 11 11 C 1.53035 * 109.50182 * 300.00365 * 9 7 2 12 12 C 1.53042 * 109.53818 * 178.68354 * 11 9 7 13 13 C 1.53188 * 109.31458 * 61.36361 * 12 11 9 14 14 N 1.46923 * 108.77493 * 305.36471 * 13 12 11 15 15 S 1.65596 * 120.63147 * 233.58230 * 14 13 12 16 16 O 1.42098 * 106.40513 * 329.93969 * 15 14 13 17 17 O 1.42102 * 106.40350 * 197.01614 * 15 14 13 18 18 C 1.76200 * 107.21686 * 83.47766 * 15 14 13 19 19 C 1.38633 * 120.47175 * 12.45517 * 18 15 14 20 20 C 1.38578 * 118.49342 * 180.02562 * 19 18 15 21 21 C 1.38630 * 119.35491 * 0.02562 * 20 19 18 22 22 N 1.31472 * 120.90367 * 0.26964 * 21 20 19 23 23 C 1.32778 * 121.64523 * 359.43988 * 22 21 20 24 24 C 1.48067 * 119.72954 * 180.28674 * 23 22 21 25 25 O 1.21431 * 120.00003 * 174.32995 * 24 23 22 26 26 O 1.34679 * 119.99952 * 354.33299 * 24 23 22 27 27 C 1.46935 * 118.73824 * 53.86159 * 14 13 12 28 28 H 0.97000 * 120.00089 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.45810 * 58.66151 * 11 9 7 30 30 H 1.08997 * 109.45032 * 298.69802 * 11 9 7 31 31 H 1.09000 * 109.49713 * 301.41014 * 12 11 9 32 32 H 1.09007 * 109.49451 * 181.31478 * 12 11 9 33 33 H 1.08990 * 109.58882 * 185.57605 * 13 12 11 34 34 H 1.09004 * 109.58572 * 65.15446 * 13 12 11 35 35 H 1.08001 * 120.75532 * 359.97438 * 19 18 15 36 36 H 1.07998 * 120.32294 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.54497 * 179.97438 * 21 20 19 38 38 H 0.96696 * 116.99798 * 179.97438 * 26 24 23 39 39 H 1.08996 * 109.58548 * 65.92471 * 27 14 13 40 40 H 1.09000 * 109.58342 * 186.35224 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5576 -0.8908 11 6 0.3713 -2.5812 1.2490 12 6 -0.4191 -3.8916 1.2334 13 6 0.5569 -5.0722 1.2509 14 7 1.4997 -4.9229 0.1340 15 16 1.7177 -6.1503 -0.9560 16 8 1.4828 -7.3607 -0.2496 17 8 2.9333 -5.8711 -1.6370 18 6 0.4337 -6.0170 -2.1552 19 6 -0.3534 -4.8775 -2.2189 20 6 -1.3520 -4.8165 -3.1777 21 6 -1.5342 -5.8879 -4.0384 22 7 -0.7771 -6.9593 -3.9525 23 6 0.1940 -7.0558 -3.0521 24 6 1.0254 -8.2798 -2.9970 25 8 1.9788 -8.3329 -2.2469 26 8 0.7241 -9.3342 -3.7789 27 6 2.2501 -3.6661 0.0061 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3212 -1.7395 1.2615 30 1 1.0003 -2.5470 2.1386 31 1 -1.0296 -3.9375 0.3316 32 1 -1.0628 -3.9386 2.1119 33 1 0.0041 -6.0049 1.1402 34 1 1.1048 -5.0795 2.1932 35 1 -0.1925 -4.0564 -1.5361 36 1 -1.9822 -3.9427 -3.2538 37 1 -2.3118 -5.8438 -4.7866 38 1 1.2960 -10.1107 -3.7083 39 1 2.9332 -3.5610 0.8489 40 1 2.8147 -3.6709 -0.9263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:02 Heat of formation + Delta-G solvation = -115.151282 kcal Electronic energy + Delta-G solvation = -28903.654472 eV Core-core repulsion = 24810.952467 eV Total energy + Delta-G solvation = -4092.702006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06745 -39.68064 -37.91621 -36.83780 -36.51971 -35.36531 -33.45061 -33.00175 -32.04887 -31.22441 -30.20729 -25.87994 -25.22640 -24.29969 -23.72054 -22.19672 -21.78659 -19.76298 -18.75038 -18.53912 -18.12128 -17.38489 -17.15871 -16.45214 -16.15911 -16.03903 -15.50356 -15.42200 -14.71898 -14.16744 -14.05440 -13.91478 -13.68813 -13.50377 -13.19858 -13.10050 -12.85005 -12.76071 -12.23627 -11.98356 -11.68331 -11.62225 -11.37137 -11.30818 -11.06670 -10.98112 -10.95081 -10.78473 -10.44727 -10.36886 -10.11192 -10.05427 -9.79280 -9.76917 -9.50163 -8.97744 -8.56987 -8.29192 -6.13834 -4.20557 -0.05583 0.62244 0.70120 2.09735 2.43591 3.18369 3.23441 3.30966 3.33959 3.35206 3.89593 3.94057 4.33167 4.47180 4.59200 4.76138 4.90524 4.93034 5.08558 5.14968 5.20462 5.51464 5.55825 5.68896 5.72033 5.88562 6.08825 6.11723 6.16259 6.23716 6.34755 6.49955 6.52660 6.73404 6.88729 7.05640 7.19200 7.27956 7.56512 7.57610 7.76165 7.95193 8.26387 8.82493 9.45369 10.91458 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.004136 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.289915 B = 6768.073301 C = 7298.277398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.038 3.962 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.138 4.138 13 C 0.122 3.878 14 N -0.997 5.997 15 S 2.704 3.296 16 O -0.943 6.943 17 O -0.943 6.943 18 C -0.667 4.667 19 C 0.005 3.995 20 C -0.149 4.149 21 C 0.133 3.867 22 N -0.445 5.445 23 C 0.178 3.822 24 C 0.530 3.470 25 O -0.481 6.481 26 O -0.483 6.483 27 C 0.116 3.884 28 H 0.261 0.739 29 H 0.097 0.903 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.174 0.826 36 H 0.158 0.842 37 H 0.175 0.825 38 H 0.419 0.581 39 H 0.069 0.931 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 -11.625 -4.514 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.019 3.981 10 H 0.046 0.954 11 C -0.150 4.150 12 C -0.177 4.177 13 C -0.003 4.003 14 N -0.838 5.838 15 S 2.787 3.213 16 O -0.933 6.933 17 O -0.933 6.933 18 C -0.751 4.751 19 C -0.021 4.021 20 C -0.170 4.170 21 C -0.025 4.025 22 N -0.157 5.157 23 C 0.039 3.961 24 C 0.371 3.629 25 O -0.367 6.367 26 O -0.293 6.293 27 C -0.007 4.007 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.191 0.809 36 H 0.175 0.825 37 H 0.192 0.808 38 H 0.278 0.722 39 H 0.087 0.913 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.907 -12.545 -4.948 14.350 hybrid contribution 0.125 1.518 0.152 1.531 sum -4.783 -11.027 -4.796 12.941 Atomic orbital electron populations 1.69845 1.05873 1.26624 1.50464 1.24914 0.94866 0.99094 0.94759 0.86583 0.79954 0.83243 0.78172 1.20681 1.21276 1.19799 1.21097 0.93223 0.90117 1.51055 0.92183 1.19128 0.92897 0.91426 0.94676 0.95428 1.21623 0.99456 0.95196 0.98755 1.22088 0.97658 0.97041 1.00927 1.21471 0.90812 0.98618 0.89425 1.57929 1.54329 1.32525 1.39061 1.02220 0.73502 0.72661 0.72908 1.93554 1.85550 1.42331 1.71893 1.93560 1.40178 1.84977 1.74612 1.32508 1.22307 1.01001 1.19240 1.21971 0.89791 0.94883 0.95419 1.22687 0.98461 1.00615 0.95208 1.23200 0.95511 0.87603 0.96194 1.67724 1.03351 1.25625 1.19005 1.19320 0.93731 0.90345 0.92726 1.20522 0.82115 0.83157 0.77092 1.90972 1.27701 1.81457 1.36583 1.84607 1.58342 1.25748 1.60591 1.22076 0.94804 0.81653 1.02171 0.92910 0.88521 0.94106 0.92770 0.92115 0.90810 0.90888 0.80862 0.82466 0.80807 0.72221 0.91273 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.79 11.31 55.43 0.63 -22.17 16 2 C 0.07 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.52 -12.78 8.56 -34.44 -0.29 -13.08 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.83 1.99 -91.43 -0.18 0.65 16 10 H 0.03 0.62 6.15 -51.92 -0.32 0.30 16 11 C -0.11 -2.26 4.96 -26.69 -0.13 -2.40 16 12 C -0.14 -2.21 5.95 -26.61 -0.16 -2.37 16 13 C 0.12 1.89 6.35 -3.71 -0.02 1.87 16 14 N -1.00 -17.50 2.34 -113.28 -0.26 -17.77 16 15 S 2.70 50.54 3.99 -107.50 -0.43 50.12 16 16 O -0.94 -18.80 14.54 -67.06 -0.97 -19.77 16 17 O -0.94 -20.12 16.00 -64.48 -1.03 -21.15 16 18 C -0.67 -11.07 5.88 -39.04 -0.23 -11.30 16 19 C 0.00 0.07 9.61 -39.31 -0.38 -0.31 16 20 C -0.15 -1.71 10.12 -39.31 -0.40 -2.11 16 21 C 0.13 1.46 11.18 -17.56 -0.20 1.26 16 22 N -0.45 -6.28 10.12 -9.81 -0.10 -6.38 16 23 C 0.18 2.87 6.75 -83.03 -0.56 2.31 16 24 C 0.53 8.36 8.18 34.76 0.28 8.64 16 25 O -0.48 -8.86 12.60 -29.55 -0.37 -9.23 16 26 O -0.48 -5.55 13.25 -40.44 -0.54 -6.08 16 27 C 0.12 2.27 5.66 -3.48 -0.02 2.25 16 28 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.10 2.22 6.04 -51.93 -0.31 1.90 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.83 6.83 -51.93 -0.35 0.48 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.03 7.32 -51.93 -0.38 0.65 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.17 2.66 3.67 -52.49 -0.19 2.46 16 36 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.42 2.47 9.11 45.56 0.42 2.88 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.62 6.95 -51.93 -0.36 1.26 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -32.93 336.28 -9.00 -41.93 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.58 Total: 3.60 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -2.38 Total: -13.03 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.26 Total: -46.31 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -2.91 Total: -56.24 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 50.54 SS G_CDS: -0.43 Total: 50.12 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.93 -9.00 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.225 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds