Wall clock time and date at job start Sat Apr 11 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00578 * 2 1 4 4 H 1.48505 * 109.47420 * 240.00485 * 3 2 1 5 5 H 1.48502 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47329 * 120.00094 * 3 2 1 7 7 C 1.37879 * 119.99241 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99420 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00610 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47361 * 179.97438 * 9 7 2 11 11 C 1.46495 * 120.00229 * 276.05039 * 10 9 7 12 12 C 1.52993 * 109.47724 * 275.00151 * 11 10 9 13 13 C 1.52998 * 117.50337 * 243.75098 * 12 11 10 14 14 C 1.53003 * 117.50464 * 175.08452 * 12 11 10 15 15 S 1.65607 * 119.99941 * 96.05286 * 10 9 7 16 16 O 1.42097 * 106.39771 * 331.61619 * 15 10 9 17 17 O 1.42097 * 106.40142 * 198.69515 * 15 10 9 18 18 C 1.76195 * 107.21501 * 85.15591 * 15 10 9 19 19 C 1.38624 * 120.47566 * 349.24633 * 18 15 10 20 20 C 1.38587 * 118.49509 * 179.97438 * 19 18 15 21 21 C 1.38627 * 119.35495 * 359.97438 * 20 19 18 22 22 N 1.31477 * 120.90356 * 0.02562 * 21 20 19 23 23 C 1.32780 * 121.64460 * 359.97438 * 22 21 20 24 24 C 1.48066 * 119.72621 * 179.97438 * 23 22 21 25 25 O 1.21438 * 119.99658 * 185.36826 * 24 23 22 26 26 O 1.34672 * 120.00438 * 5.36228 * 24 23 22 27 27 H 0.97006 * 119.99263 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46649 * 59.99705 * 9 7 2 29 29 H 1.08998 * 109.47192 * 300.00189 * 9 7 2 30 30 H 1.09002 * 109.47323 * 35.00198 * 11 10 9 31 31 H 1.09006 * 109.47561 * 155.00022 * 11 10 9 32 32 H 1.09011 * 115.54792 * 29.41442 * 12 11 10 33 33 H 1.09006 * 117.49703 * 359.97438 * 13 12 11 34 34 H 1.08994 * 117.50597 * 145.01452 * 13 12 11 35 35 H 1.08997 * 117.49571 * 214.97887 * 14 12 11 36 36 H 1.08995 * 117.49384 * 0.02562 * 14 12 11 37 37 H 1.08003 * 120.75432 * 0.25759 * 19 18 15 38 38 H 1.07997 * 120.32617 * 179.97438 * 20 19 18 39 39 H 1.07993 * 119.54904 * 179.97438 * 21 20 19 40 40 H 0.96697 * 117.00295 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2027 -3.6128 -0.0018 11 6 2.7794 -4.0821 -1.2640 12 6 1.8282 -5.0868 -1.9170 13 6 2.3254 -6.5239 -2.0856 14 6 2.1978 -5.6095 -3.3067 15 16 2.6269 -4.3411 1.4238 16 8 2.4971 -3.3507 2.4344 17 8 3.8379 -5.0407 1.1722 18 6 1.4071 -5.5653 1.7671 19 6 0.2343 -5.6153 1.0298 20 6 -0.6969 -6.5955 1.3344 21 6 -0.4307 -7.4908 2.3587 22 7 0.6901 -7.4209 3.0425 23 6 1.6081 -6.4974 2.7828 24 6 2.8552 -6.4572 3.5800 25 8 3.6535 -5.5575 3.4134 26 8 3.1040 -7.4184 4.4899 27 1 -0.4849 0.8402 0.0004 28 1 0.6238 -2.5566 -0.8903 29 1 0.6245 -2.5571 0.8896 30 1 2.9278 -3.2345 -1.9331 31 1 3.7379 -4.5632 -1.0690 32 1 0.7699 -4.9428 -1.6985 33 1 3.3305 -6.7535 -1.7317 34 1 1.5945 -7.3253 -1.9785 35 1 1.3828 -5.8097 -4.0022 36 1 3.1189 -5.2379 -3.7555 37 1 0.0523 -4.9093 0.2330 38 1 -1.6208 -6.6613 0.7791 39 1 -1.1543 -8.2557 2.5990 40 1 3.9310 -7.3495 4.9863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:07 Heat of formation + Delta-G solvation = -82.104524 kcal Electronic energy + Delta-G solvation = -28812.519872 eV Core-core repulsion = 24721.250881 eV Total energy + Delta-G solvation = -4091.268991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98362 -39.59726 -37.75749 -36.53957 -36.31935 -35.05910 -34.89177 -32.99677 -32.38019 -31.97850 -27.88473 -25.91179 -25.38202 -24.24150 -22.61833 -22.20811 -22.12917 -20.37419 -18.76431 -18.57353 -17.89418 -17.21421 -17.10552 -16.37980 -16.09661 -16.03669 -15.59456 -15.35989 -14.86759 -14.45874 -14.30130 -14.02799 -13.89058 -13.49351 -13.41508 -13.01327 -12.55953 -12.39350 -11.91666 -11.71269 -11.56947 -11.41201 -11.35909 -11.25035 -11.20194 -11.01358 -10.82285 -10.77607 -10.58470 -10.38495 -10.26038 -10.07354 -9.87350 -9.78045 -9.72207 -9.65246 -8.46864 -8.20585 -6.09647 -4.12870 0.02272 0.73714 0.93754 2.18042 2.53299 3.34029 3.37514 3.38030 3.42772 3.52038 3.92028 3.98624 4.20362 4.42996 4.50443 4.66593 4.79148 4.88614 4.94819 5.05920 5.08786 5.13149 5.25964 5.34652 5.49811 5.56805 5.67769 5.72691 5.75704 5.98125 6.05413 6.13089 6.20823 6.21978 6.47154 6.52955 7.07605 7.24810 7.28881 7.49873 7.66343 7.88440 8.15252 8.89140 9.52560 10.99274 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.005012 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.897233 B = 5584.991347 C = 6394.134025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.984 5.984 11 C 0.149 3.851 12 C -0.175 4.175 13 C -0.190 4.190 14 C -0.170 4.170 15 S 2.699 3.301 16 O -0.925 6.925 17 O -0.953 6.953 18 C -0.659 4.659 19 C 0.008 3.992 20 C -0.155 4.155 21 C 0.130 3.870 22 N -0.445 5.445 23 C 0.180 3.820 24 C 0.528 3.472 25 O -0.476 6.476 26 O -0.484 6.484 27 H 0.264 0.736 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.173 0.827 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 -16.817 -0.693 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.824 5.824 11 C 0.022 3.978 12 C -0.195 4.195 13 C -0.227 4.227 14 C -0.208 4.208 15 S 2.780 3.220 16 O -0.915 6.915 17 O -0.943 6.943 18 C -0.741 4.741 19 C -0.017 4.017 20 C -0.175 4.175 21 C -0.028 4.028 22 N -0.157 5.157 23 C 0.041 3.959 24 C 0.368 3.632 25 O -0.362 6.362 26 O -0.295 6.295 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.180 0.820 38 H 0.171 0.829 39 H 0.190 0.810 40 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -0.937 -16.923 0.287 16.951 hybrid contribution -0.145 1.080 -0.454 1.180 sum -1.082 -15.843 -0.167 15.881 Atomic orbital electron populations 1.69896 1.05992 1.27289 1.50439 1.24909 0.94908 0.99284 0.94792 0.86567 0.79617 0.82478 0.78907 1.20099 1.21197 1.19900 1.21402 0.93746 0.90352 1.51134 0.91914 1.19189 0.87143 0.82454 0.98340 1.57693 1.59802 1.44554 1.20389 1.20871 0.94312 0.96910 0.85696 1.23048 1.01170 0.95350 0.99960 1.23127 1.02850 0.93471 1.03220 1.22877 1.03278 1.03873 0.90787 1.02481 0.73251 0.73005 0.73257 1.93611 1.85479 1.56003 1.56369 1.93499 1.40363 1.74995 1.85420 1.32770 1.18186 1.18592 1.04525 1.21570 0.89581 0.95407 0.95168 1.22590 1.00774 0.95558 0.98618 1.23131 0.92949 0.96608 0.90151 1.67715 1.01787 1.19927 1.26241 1.19322 0.92276 0.92034 0.92292 1.20521 0.84787 0.79644 0.78205 1.91000 1.46199 1.34670 1.64298 1.84593 1.46400 1.49053 1.49432 0.92605 0.94166 0.94504 0.88549 0.89761 0.87434 0.88423 0.89359 0.88964 0.88566 0.82025 0.82887 0.81006 0.72253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 13.29 55.43 0.74 -24.63 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.53 -14.38 9.38 -34.44 -0.32 -14.70 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.25 5.92 4.40 -5.20 -0.02 5.90 16 10 N -0.98 -19.91 1.93 -115.67 -0.22 -20.14 16 11 C 0.15 2.51 5.94 -4.05 -0.02 2.48 16 12 C -0.18 -2.39 5.85 -90.62 -0.53 -2.92 16 13 C -0.19 -2.27 10.18 -26.69 -0.27 -2.54 16 14 C -0.17 -1.93 10.26 -26.69 -0.27 -2.20 16 15 S 2.70 57.86 3.93 -107.50 -0.42 57.44 16 16 O -0.92 -23.77 16.49 -64.86 -1.07 -24.84 16 17 O -0.95 -21.02 14.23 -66.97 -0.95 -21.97 16 18 C -0.66 -11.60 5.87 -39.04 -0.23 -11.83 16 19 C 0.01 0.12 9.64 -39.31 -0.38 -0.26 16 20 C -0.16 -1.63 10.12 -39.31 -0.40 -2.02 16 21 C 0.13 1.39 11.18 -17.56 -0.20 1.20 16 22 N -0.44 -6.43 10.12 -9.81 -0.10 -6.53 16 23 C 0.18 3.06 6.75 -83.03 -0.56 2.50 16 24 C 0.53 9.02 8.20 34.76 0.29 9.30 16 25 O -0.48 -9.66 12.59 -29.65 -0.37 -10.03 16 26 O -0.48 -6.05 13.25 -40.42 -0.54 -6.59 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 28 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.04 0.93 7.71 -51.93 -0.40 0.53 16 30 H 0.10 1.64 8.11 -51.93 -0.42 1.22 16 31 H 0.08 1.39 6.61 -51.93 -0.34 1.05 16 32 H 0.11 1.41 6.91 -51.92 -0.36 1.05 16 33 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.16 2.16 5.39 -52.48 -0.28 1.88 16 38 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.42 2.91 9.11 45.56 0.42 3.33 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -36.65 356.55 -9.50 -46.15 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.89 Total: 2.67 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.02 Total: -13.44 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.41 Total: -51.29 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: -2.93 Total: -63.43 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 57.86 SS G_CDS: -0.42 Total: 57.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.65 -9.50 -46.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.956 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds