Wall clock time and date at job start Sat Apr 11 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48504 * 109.46835 * 272.49524 * 3 2 1 5 5 H 1.48494 * 109.47318 * 32.49799 * 3 2 1 6 6 H 1.48500 * 109.46745 * 152.49781 * 3 2 1 7 7 C 1.38951 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99587 * 342.47803 * 7 2 1 9 9 N 1.37095 * 120.00301 * 162.47015 * 7 2 1 10 10 C 1.46497 * 119.99973 * 320.47511 * 9 7 2 11 11 C 1.53000 * 109.47040 * 269.99670 * 10 9 7 12 12 C 1.50697 * 109.47201 * 180.02562 * 11 10 9 13 13 O 1.20830 * 120.00215 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00213 * 180.02562 * 12 11 10 15 15 C 1.34776 * 120.00002 * 140.46871 * 9 7 2 16 16 O 1.21288 * 120.00096 * 184.78043 * 15 9 7 17 17 C 1.50700 * 119.99942 * 4.78272 * 15 9 7 18 18 C 1.50700 * 109.47132 * 183.23183 * 17 15 9 19 19 C 1.38272 * 119.96899 * 99.13337 * 18 17 15 20 20 C 1.38175 * 120.02104 * 180.27523 * 19 18 17 21 21 C 1.38487 * 119.97146 * 359.42907 * 20 19 18 22 22 F 1.35109 * 120.02029 * 180.29322 * 21 20 19 23 23 C 1.38435 * 119.95186 * 0.58986 * 21 20 19 24 24 C 1.38216 * 119.97525 * 279.15466 * 18 17 15 25 25 N 1.48004 * 119.99065 * 359.97438 * 24 18 17 26 26 O 1.21794 * 120.00102 * 183.70038 * 25 24 18 27 27 O 1.21803 * 119.99852 * 3.70343 * 25 24 18 28 28 H 0.97001 * 119.99738 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47508 * 29.99479 * 10 9 7 30 30 H 1.08998 * 109.47379 * 149.99651 * 10 9 7 31 31 H 1.09003 * 109.47278 * 300.00338 * 11 10 9 32 32 H 1.09001 * 109.47063 * 60.00297 * 11 10 9 33 33 H 0.96700 * 117.00415 * 180.02562 * 14 12 11 34 34 H 1.09005 * 109.46917 * 63.23197 * 17 15 9 35 35 H 1.09005 * 109.47142 * 303.23737 * 17 15 9 36 36 H 1.08000 * 119.99063 * 359.97438 * 19 18 17 37 37 H 1.07994 * 120.01224 * 179.72079 * 20 19 18 38 38 H 1.08002 * 120.01402 * 179.72311 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4428 2.0769 -1.3988 5 1 1.4730 2.6369 0.7522 6 1 3.5711 1.4255 0.6465 7 6 2.0090 -1.2033 0.0005 8 1 1.5066 -2.1168 0.2826 9 7 3.3322 -1.2310 -0.3571 10 6 3.8089 -0.4006 -1.4658 11 6 3.7031 -1.1869 -2.7740 12 6 4.1941 -0.3330 -3.9145 13 8 4.5877 0.7896 -3.7028 14 8 4.1931 -0.8190 -5.1657 15 6 4.1945 -2.0222 0.3115 16 8 5.3789 -1.9826 0.0533 17 6 3.6871 -2.9560 1.3800 18 6 4.8517 -3.6639 2.0230 19 6 5.3518 -3.2142 3.2311 20 6 6.4233 -3.8589 3.8189 21 6 6.9887 -4.9631 3.2032 22 9 8.0326 -5.5979 3.7800 23 6 6.4875 -5.4121 1.9935 24 6 5.4195 -4.7618 1.4044 25 7 4.8830 -5.2420 0.1113 26 8 5.3386 -6.2488 -0.4008 27 8 3.9861 -4.6302 -0.4408 28 1 -0.4850 0.8401 0.0004 29 1 3.1992 0.5004 -1.5332 30 1 4.8485 -0.1236 -1.2914 31 1 4.3128 -2.0880 -2.7067 32 1 2.6634 -1.4639 -2.9484 33 1 4.5176 -0.2342 -5.8641 34 1 3.0175 -3.6906 0.9324 35 1 3.1470 -2.3848 2.1352 36 1 4.9078 -2.3557 3.7132 37 1 6.8166 -3.5048 4.7602 38 1 6.9305 -6.2704 1.5103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:10 Heat of formation + Delta-G solvation = -129.945636 kcal Electronic energy + Delta-G solvation = -30161.265703 eV Core-core repulsion = 25501.708990 eV Total energy + Delta-G solvation = -4659.556713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.27685 -42.07855 -40.03793 -39.62831 -38.60260 -36.41945 -35.95400 -35.21746 -32.78538 -32.26905 -32.10989 -30.87639 -27.98085 -26.23512 -25.12756 -24.33575 -22.96234 -22.16799 -20.80852 -19.48062 -19.08167 -18.51176 -17.92837 -17.46476 -17.07189 -16.82684 -16.61745 -16.38944 -16.29642 -15.94571 -15.75764 -15.52221 -14.82525 -14.55715 -14.16362 -13.95161 -13.69292 -13.28072 -12.96088 -12.80017 -12.55750 -12.35181 -12.21546 -11.90615 -11.83284 -11.76844 -11.29137 -11.21737 -11.15066 -10.90844 -10.87847 -10.36279 -10.31115 -10.22709 -9.92731 -9.79061 -9.40644 -9.12875 -8.72254 -7.98615 -6.58764 -4.25802 -0.13214 0.67072 1.38087 1.53511 2.52014 3.01584 3.03514 3.17576 3.23644 3.25083 3.60218 3.75620 4.03127 4.17889 4.25355 4.41130 4.52659 4.70972 4.83305 4.97753 5.34082 5.36726 5.43359 5.51616 5.58739 5.66004 5.76459 5.85903 6.07681 6.10583 6.12080 6.20145 6.28374 6.49264 6.65496 6.74410 7.19851 7.87235 7.92955 8.10360 8.16692 8.78155 9.15799 9.48527 10.50518 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.004169 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.767961 B = 6714.913845 C = 7784.894990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.072 3.928 3 Si 0.871 3.129 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.351 4.351 8 H 0.111 0.889 9 N -0.457 5.457 10 C 0.113 3.887 11 C -0.123 4.123 12 C 0.484 3.516 13 O -0.522 6.522 14 O -0.518 6.518 15 C 0.505 3.495 16 O -0.599 6.599 17 C -0.107 4.107 18 C 0.012 3.988 19 C -0.084 4.084 20 C -0.101 4.101 21 C 0.091 3.909 22 F -0.128 7.128 23 C -0.094 4.094 24 C -0.004 4.004 25 N 0.034 4.966 26 O -0.177 6.177 27 O -0.129 6.129 28 H 0.277 0.723 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.403 0.597 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.785 -6.434 4.437 11.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.137 4.137 3 Si 0.699 3.301 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.478 4.478 8 H 0.128 0.872 9 N -0.176 5.176 10 C -0.010 4.010 11 C -0.162 4.162 12 C 0.327 3.673 13 O -0.411 6.411 14 O -0.330 6.330 15 C 0.294 3.706 16 O -0.485 6.485 17 C -0.146 4.146 18 C 0.010 3.990 19 C -0.103 4.103 20 C -0.119 4.119 21 C 0.071 3.929 22 F -0.107 7.107 23 C -0.114 4.114 24 C -0.088 4.088 25 N 0.553 4.447 26 O -0.387 6.387 27 O -0.349 6.349 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.261 0.739 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.176 0.824 37 H 0.170 0.830 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.440 -6.085 5.322 11.687 hybrid contribution 0.500 1.088 -0.822 1.453 sum 8.940 -4.997 4.500 11.186 Atomic orbital electron populations 1.69715 1.06137 1.28395 1.44708 1.25338 0.95110 0.98476 0.94752 0.87045 0.80782 0.83475 0.78825 1.19411 1.21419 1.18532 1.19146 0.83304 0.96322 1.49019 0.87172 1.43534 1.08772 1.39242 1.26102 1.21431 1.01134 0.93566 0.84878 1.21753 1.04980 0.99371 0.90070 1.23745 0.73907 0.86301 0.83326 1.90695 1.44581 1.20962 1.84823 1.84590 1.79397 1.50543 1.18444 1.19752 0.85244 0.83009 0.82548 1.90579 1.16493 1.71707 1.69700 1.20952 0.94780 0.99650 0.99252 1.19746 0.95454 0.90533 0.93265 1.21049 0.95448 0.99904 0.93892 1.21532 0.95788 0.93636 1.00987 1.17168 0.88526 0.94426 0.92796 1.91553 1.54559 1.80975 1.83595 1.20763 0.94934 1.01155 0.94570 1.20518 1.00511 1.00298 0.87435 1.43368 0.99745 0.99772 1.01848 1.94498 1.62412 1.14990 1.66827 1.94580 1.21070 1.56484 1.62797 0.91255 0.90590 0.90191 0.87378 0.86405 0.73914 0.85527 0.86930 0.82425 0.82960 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.08 13.96 55.50 0.77 -21.30 16 2 C 0.07 1.77 5.37 -17.46 -0.09 1.67 16 3 Si 0.87 19.87 24.91 -169.99 -4.23 15.63 16 4 H -0.27 -6.19 6.62 56.52 0.37 -5.81 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.35 -8.27 9.00 -14.93 -0.13 -8.41 16 8 H 0.11 2.67 7.39 -52.49 -0.39 2.28 16 9 N -0.46 -10.16 2.16 -114.82 -0.25 -10.41 16 10 C 0.11 2.47 3.50 -4.04 -0.01 2.45 16 11 C -0.12 -2.31 6.13 -27.88 -0.17 -2.49 16 12 C 0.48 8.57 8.33 36.00 0.30 8.87 16 13 O -0.52 -10.65 16.74 -18.75 -0.31 -10.96 16 14 O -0.52 -7.21 13.42 -39.26 -0.53 -7.73 16 15 C 0.50 10.65 6.24 -10.99 -0.07 10.59 16 16 O -0.60 -13.84 15.49 5.55 0.09 -13.76 16 17 C -0.11 -1.84 3.77 -29.03 -0.11 -1.95 16 18 C 0.01 0.18 4.44 -104.62 -0.46 -0.28 16 19 C -0.08 -0.98 9.67 -39.59 -0.38 -1.36 16 20 C -0.10 -1.00 10.03 -39.51 -0.40 -1.40 16 21 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 22 F -0.13 -1.41 17.27 2.25 0.04 -1.37 16 23 C -0.09 -1.22 9.54 -39.51 -0.38 -1.59 16 24 C 0.00 -0.06 6.70 -79.97 -0.54 -0.60 16 25 N 0.03 0.59 4.45 33.95 0.15 0.75 16 26 O -0.18 -3.08 18.45 -29.46 -0.54 -3.62 16 27 O -0.13 -2.48 14.30 -29.46 -0.42 -2.90 16 28 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.08 1.75 3.04 -51.93 -0.16 1.59 16 30 H 0.08 1.80 7.32 -51.93 -0.38 1.42 16 31 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 32 H 0.12 2.17 8.14 -51.93 -0.42 1.74 16 33 H 0.40 3.62 9.10 45.56 0.41 4.03 16 34 H 0.13 2.21 5.74 -51.93 -0.30 1.91 16 35 H 0.11 1.75 7.81 -51.93 -0.41 1.35 16 36 H 0.16 1.47 8.04 -52.49 -0.42 1.04 16 37 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.16 1.84 7.61 -52.49 -0.40 1.44 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -31.13 340.70 -5.31 -36.44 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -2.47 Total: 7.87 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -2.73 Total: 6.24 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.68 Total: -30.96 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.72 Total: -38.98 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.23 Total: 15.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.13 -5.31 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.508 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds