Wall clock time and date at job start Sat Apr 11 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48504 * 109.46835 * 272.49524 * 3 2 1 5 5 H 1.48494 * 109.47318 * 32.49799 * 3 2 1 6 6 H 1.48500 * 109.46745 * 152.49781 * 3 2 1 7 7 C 1.38951 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99587 * 342.47803 * 7 2 1 9 9 N 1.37095 * 120.00301 * 162.47015 * 7 2 1 10 10 C 1.46497 * 119.99973 * 320.47511 * 9 7 2 11 11 C 1.53000 * 109.47040 * 269.99670 * 10 9 7 12 12 C 1.50697 * 109.47201 * 180.02562 * 11 10 9 13 13 O 1.20830 * 120.00215 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00213 * 180.02562 * 12 11 10 15 15 C 1.34776 * 120.00002 * 140.46871 * 9 7 2 16 16 O 1.21288 * 120.00096 * 184.78043 * 15 9 7 17 17 C 1.50700 * 119.99942 * 4.78272 * 15 9 7 18 18 C 1.50700 * 109.47132 * 183.23183 * 17 15 9 19 19 C 1.38272 * 119.96899 * 99.13337 * 18 17 15 20 20 C 1.38175 * 120.02104 * 180.27523 * 19 18 17 21 21 C 1.38487 * 119.97146 * 359.42907 * 20 19 18 22 22 F 1.35109 * 120.02029 * 180.29322 * 21 20 19 23 23 C 1.38435 * 119.95186 * 0.58986 * 21 20 19 24 24 C 1.38216 * 119.97525 * 279.15466 * 18 17 15 25 25 N 1.48004 * 119.99065 * 359.97438 * 24 18 17 26 26 O 1.21794 * 120.00102 * 183.70038 * 25 24 18 27 27 O 1.21803 * 119.99852 * 3.70343 * 25 24 18 28 28 H 0.97001 * 119.99738 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47508 * 29.99479 * 10 9 7 30 30 H 1.08998 * 109.47379 * 149.99651 * 10 9 7 31 31 H 1.09003 * 109.47278 * 300.00338 * 11 10 9 32 32 H 1.09001 * 109.47063 * 60.00297 * 11 10 9 33 33 H 0.96700 * 117.00415 * 180.02562 * 14 12 11 34 34 H 1.09005 * 109.46917 * 63.23197 * 17 15 9 35 35 H 1.09005 * 109.47142 * 303.23737 * 17 15 9 36 36 H 1.08000 * 119.99063 * 359.97438 * 19 18 17 37 37 H 1.07994 * 120.01224 * 179.72079 * 20 19 18 38 38 H 1.08002 * 120.01402 * 179.72311 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4428 2.0769 -1.3988 5 1 1.4730 2.6369 0.7522 6 1 3.5711 1.4255 0.6465 7 6 2.0090 -1.2033 0.0005 8 1 1.5066 -2.1168 0.2826 9 7 3.3322 -1.2310 -0.3571 10 6 3.8089 -0.4006 -1.4658 11 6 3.7031 -1.1869 -2.7740 12 6 4.1941 -0.3330 -3.9145 13 8 4.5877 0.7896 -3.7028 14 8 4.1931 -0.8190 -5.1657 15 6 4.1945 -2.0222 0.3115 16 8 5.3789 -1.9826 0.0533 17 6 3.6871 -2.9560 1.3800 18 6 4.8517 -3.6639 2.0230 19 6 5.3518 -3.2142 3.2311 20 6 6.4233 -3.8589 3.8189 21 6 6.9887 -4.9631 3.2032 22 9 8.0326 -5.5979 3.7800 23 6 6.4875 -5.4121 1.9935 24 6 5.4195 -4.7618 1.4044 25 7 4.8830 -5.2420 0.1113 26 8 5.3386 -6.2488 -0.4008 27 8 3.9861 -4.6302 -0.4408 28 1 -0.4850 0.8401 0.0004 29 1 3.1992 0.5004 -1.5332 30 1 4.8485 -0.1236 -1.2914 31 1 4.3128 -2.0880 -2.7067 32 1 2.6634 -1.4639 -2.9484 33 1 4.5176 -0.2342 -5.8641 34 1 3.0175 -3.6906 0.9324 35 1 3.1470 -2.3848 2.1352 36 1 4.9078 -2.3557 3.7132 37 1 6.8166 -3.5048 4.7602 38 1 6.9305 -6.2704 1.5103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:09 Heat of formation + Delta-G solvation = -149.229929 kcal Electronic energy + Delta-G solvation = -30162.101932 eV Core-core repulsion = 25501.708990 eV Total energy + Delta-G solvation = -4660.392943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.16481 -43.36274 -41.49864 -40.94059 -39.97622 -37.77182 -37.33483 -36.90296 -34.28092 -33.85554 -33.13646 -32.44163 -29.24404 -27.47093 -26.95007 -25.82790 -24.05407 -23.30224 -22.23680 -21.06467 -20.39296 -19.79745 -19.36835 -18.85530 -18.53381 -18.10819 -17.97871 -17.77483 -17.50894 -17.09598 -16.95732 -16.83542 -16.28930 -16.03284 -15.69082 -15.04892 -14.91782 -14.81627 -14.50852 -14.31243 -13.99547 -13.67198 -13.45175 -13.38502 -13.26456 -12.92383 -12.88091 -12.71246 -12.62418 -12.54832 -12.26139 -12.07648 -11.81332 -11.69952 -11.68356 -11.18080 -10.74744 -10.64157 -10.02780 -9.79472 -8.49997 -6.16393 -1.30307 -0.30669 0.20124 0.35466 1.09351 1.20645 1.33175 1.40322 1.75255 1.95691 2.08905 2.17091 2.70474 2.81555 2.97807 3.25079 3.32448 3.63122 3.68906 3.79886 3.83652 3.96596 4.19824 4.29566 4.32851 4.53049 4.54077 4.59501 4.65116 4.75264 4.75817 4.85817 4.97842 5.18813 5.39167 5.45318 5.50625 6.10280 6.23027 6.49790 6.92362 6.93702 7.35834 7.71939 8.62793 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.004169 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.767961 B = 6714.913845 C = 7784.894990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.044 3.956 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.336 4.336 8 H 0.100 0.900 9 N -0.469 5.469 10 C 0.111 3.889 11 C -0.118 4.118 12 C 0.496 3.504 13 O -0.552 6.552 14 O -0.504 6.504 15 C 0.506 3.494 16 O -0.618 6.618 17 C -0.101 4.101 18 C -0.009 4.009 19 C -0.081 4.081 20 C -0.075 4.075 21 C 0.099 3.901 22 F -0.122 7.122 23 C -0.098 4.098 24 C -0.025 4.025 25 N 0.035 4.965 26 O -0.170 6.170 27 O -0.180 6.180 28 H 0.280 0.720 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.428 0.572 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.185 0.815 37 H 0.196 0.804 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 -6.666 5.978 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.161 4.161 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.463 4.463 8 H 0.117 0.883 9 N -0.189 5.189 10 C -0.012 4.012 11 C -0.157 4.157 12 C 0.339 3.661 13 O -0.443 6.443 14 O -0.318 6.318 15 C 0.297 3.703 16 O -0.505 6.505 17 C -0.140 4.140 18 C -0.011 4.011 19 C -0.099 4.099 20 C -0.093 4.093 21 C 0.079 3.921 22 F -0.101 7.101 23 C -0.117 4.117 24 C -0.109 4.109 25 N 0.549 4.451 26 O -0.386 6.386 27 O -0.390 6.390 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.290 0.710 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.202 0.798 37 H 0.214 0.786 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.000 -6.275 6.815 13.632 hybrid contribution 0.196 1.010 -1.266 1.631 sum 10.195 -5.266 5.549 12.746 Atomic orbital electron populations 1.69757 1.06956 1.28993 1.46755 1.25662 0.95347 1.00059 0.95052 0.86414 0.79694 0.81775 0.78202 1.20255 1.20821 1.19144 1.19033 0.83700 0.95731 1.47834 0.88257 1.43635 1.08508 1.39896 1.26868 1.21357 0.99952 0.93634 0.86271 1.21579 1.05301 0.99137 0.89694 1.23324 0.73191 0.85380 0.84158 1.90690 1.46043 1.22059 1.85499 1.84514 1.78827 1.50766 1.17662 1.20362 0.84809 0.82468 0.82671 1.90550 1.17432 1.72118 1.70380 1.20836 0.95897 0.98894 0.98365 1.19772 0.95548 0.90942 0.94844 1.21397 0.95555 1.00439 0.92518 1.21972 0.93911 0.91794 1.01672 1.17238 0.88290 0.94525 0.92097 1.91581 1.54239 1.80939 1.83302 1.20926 0.94195 1.01345 0.95283 1.20672 1.02028 1.01580 0.86586 1.43733 0.99358 0.99441 1.02586 1.94450 1.61809 1.14990 1.67315 1.94579 1.22791 1.57313 1.64276 0.90988 0.91823 0.91378 0.87282 0.86144 0.70966 0.86305 0.85490 0.79805 0.78639 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.26 13.96 21.66 0.30 -45.96 16 2 C 0.04 2.19 5.37 84.93 0.46 2.65 16 3 Si 0.91 41.16 24.91 68.60 1.71 42.87 16 4 H -0.28 -12.71 6.62 99.48 0.66 -12.05 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.34 -16.02 9.00 84.04 0.76 -15.27 16 8 H 0.10 4.92 7.39 -2.91 -0.02 4.90 16 9 N -0.47 -21.09 2.16 -635.56 -1.37 -22.47 16 10 C 0.11 4.91 3.50 86.38 0.30 5.21 16 11 C -0.12 -4.49 6.13 29.85 0.18 -4.31 16 12 C 0.50 17.24 8.33 71.24 0.59 17.83 16 13 O -0.55 -22.33 16.74 21.95 0.37 -21.96 16 14 O -0.50 -13.12 13.42 -51.41 -0.69 -13.81 16 15 C 0.51 21.47 6.24 87.66 0.55 22.01 16 16 O -0.62 -28.65 15.49 -3.06 -0.05 -28.69 16 17 C -0.10 -3.45 3.77 29.10 0.11 -3.34 16 18 C -0.01 -0.26 4.44 -19.86 -0.09 -0.35 16 19 C -0.08 -1.61 9.67 22.26 0.22 -1.39 16 20 C -0.08 -1.15 10.03 22.31 0.22 -0.93 16 21 C 0.10 1.88 7.30 22.38 0.16 2.05 16 22 F -0.12 -2.23 17.27 44.97 0.78 -1.45 16 23 C -0.10 -2.33 9.54 22.31 0.21 -2.11 16 24 C -0.02 -0.75 6.70 36.37 0.24 -0.51 16 25 N 0.03 1.25 4.45 -46.49 -0.21 1.04 16 26 O -0.17 -5.94 18.45 18.89 0.35 -5.60 16 27 O -0.18 -7.20 14.30 18.88 0.27 -6.93 16 28 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 29 H 0.06 2.96 3.04 -2.39 -0.01 2.95 16 30 H 0.07 3.13 7.32 -2.39 -0.02 3.11 16 31 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 32 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 33 H 0.43 6.65 9.10 -74.06 -0.67 5.98 16 34 H 0.12 4.28 5.74 -2.38 -0.01 4.27 16 35 H 0.13 3.86 7.81 -2.38 -0.02 3.84 16 36 H 0.18 2.66 8.04 -2.91 -0.02 2.63 16 37 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 38 H 0.17 3.61 7.61 -2.91 -0.02 3.59 16 Total: -1.00 -68.20 340.70 5.81 -62.39 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.44 Total: 19.01 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 3.92 Total: 21.55 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -1.28 Total: -67.38 kcal Atomic # 8 Polarization: -77.24 SS G_CDS: 0.25 Total: -76.99 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.78 Total: -1.45 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.71 Total: 42.87 kcal Total: -68.20 5.81 -62.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.844 kcal (2) G-P(sol) polarization free energy of solvation -68.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds