Wall clock time and date at job start Sat Apr 11 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86792 * 120.00168 * 2 1 4 4 H 1.48506 * 109.47366 * 275.50831 * 3 2 1 5 5 H 1.48506 * 109.47381 * 35.50591 * 3 2 1 6 6 H 1.48498 * 109.47313 * 155.50775 * 3 2 1 7 7 C 1.38949 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00119 * 339.78076 * 7 2 1 9 9 N 1.37098 * 120.00216 * 159.78558 * 7 2 1 10 10 C 1.46507 * 119.99778 * 323.63813 * 9 7 2 11 11 C 1.52994 * 109.47301 * 269.72709 * 10 9 7 12 12 C 1.50698 * 109.47148 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99981 * 0.02562 * 12 11 10 14 14 O 1.34236 * 119.99871 * 179.97438 * 12 11 10 15 15 C 1.34768 * 120.00507 * 143.36331 * 9 7 2 16 16 O 1.21290 * 120.00567 * 174.62443 * 15 9 7 17 17 C 1.50703 * 120.00042 * 354.62896 * 15 9 7 18 18 C 1.50699 * 109.47599 * 184.74274 * 17 15 9 19 19 C 1.38263 * 119.99015 * 266.16584 * 18 17 15 20 20 C 1.38220 * 120.05329 * 179.97438 * 19 18 17 21 21 C 1.38222 * 120.02428 * 0.02562 * 20 19 18 22 22 C 1.38434 * 119.97564 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.02729 * 180.02562 * 22 21 20 24 24 C 1.38175 * 119.98237 * 85.88458 * 18 17 15 25 25 N 1.48003 * 120.01689 * 0.02562 * 24 18 17 26 26 O 1.21806 * 119.99989 * 89.99706 * 25 24 18 27 27 O 1.21800 * 120.00242 * 270.00266 * 25 24 18 28 28 H 0.97006 * 120.00062 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46767 * 29.72428 * 10 9 7 30 30 H 1.09002 * 109.46984 * 149.72112 * 10 9 7 31 31 H 1.09002 * 109.47021 * 300.00140 * 11 10 9 32 32 H 1.09001 * 109.47105 * 59.99976 * 11 10 9 33 33 H 0.96701 * 116.99732 * 180.02562 * 14 12 11 34 34 H 1.08997 * 109.47173 * 304.74567 * 17 15 9 35 35 H 1.09008 * 109.47146 * 64.74013 * 17 15 9 36 36 H 1.07997 * 119.97473 * 359.97438 * 19 18 17 37 37 H 1.07995 * 119.98869 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.01286 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.3792 2.1136 -1.3936 5 1 1.5086 2.6163 0.8132 6 1 3.5989 1.4093 0.5804 7 6 2.0087 -1.2034 -0.0005 8 1 1.5186 -2.1100 0.3223 9 7 3.3164 -1.2399 -0.4108 10 6 3.7628 -0.3829 -1.5121 11 6 3.5997 -1.1293 -2.8376 12 6 4.0582 -0.2476 -3.9703 13 8 4.4734 0.8637 -3.7410 14 8 4.0064 -0.6972 -5.2341 15 6 4.1925 -2.0599 0.2025 16 8 5.3240 -2.1651 -0.2216 17 6 3.7664 -2.8464 1.4154 18 6 4.9526 -3.5885 1.9752 19 6 5.1937 -4.8951 1.5928 20 6 6.2816 -5.5767 2.1050 21 6 7.1294 -4.9528 3.0009 22 6 6.8890 -3.6446 3.3845 23 9 7.7173 -3.0337 4.2597 24 6 5.8020 -2.9608 2.8661 25 7 5.5468 -1.5603 3.2710 26 8 4.8499 -1.3243 4.2417 27 8 6.0336 -0.6437 2.6335 28 1 -0.4850 0.8401 0.0004 29 1 3.1623 0.5266 -1.5310 30 1 4.8115 -0.1229 -1.3680 31 1 4.2001 -2.0389 -2.8186 32 1 2.5509 -1.3892 -2.9815 33 1 4.3117 -0.0956 -5.9269 34 1 3.3743 -2.1654 2.1707 35 1 2.9922 -3.5597 1.1323 36 1 4.5316 -5.3835 0.8932 37 1 6.4692 -6.5971 1.8053 38 1 7.9791 -5.4857 3.4013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:12 Heat of formation + Delta-G solvation = -130.929560 kcal Electronic energy + Delta-G solvation = -30259.729268 eV Core-core repulsion = 25600.129889 eV Total energy + Delta-G solvation = -4659.599379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.46024 -41.94716 -40.10124 -39.70268 -38.65307 -36.19997 -36.02386 -35.31306 -33.22064 -32.36749 -31.66416 -30.97664 -28.17894 -26.24592 -25.19733 -24.52282 -22.73765 -22.23438 -20.87830 -19.44566 -19.07175 -18.51277 -18.00850 -17.90334 -17.48315 -16.94075 -16.50457 -16.38128 -16.08592 -16.06642 -15.62493 -15.48492 -15.09185 -14.60281 -14.17536 -13.84520 -13.48428 -13.30361 -12.97947 -12.81179 -12.66384 -12.54823 -12.29683 -11.92850 -11.80169 -11.57214 -11.36038 -11.33222 -11.15653 -10.91029 -10.83230 -10.79918 -10.34645 -10.29888 -9.90624 -9.68381 -9.40488 -9.18779 -8.80380 -8.09536 -6.65607 -4.30403 0.42526 0.67828 0.76353 1.49344 2.47127 2.97223 3.03985 3.16797 3.23530 3.33933 3.46953 3.51717 4.02543 4.10314 4.28699 4.41165 4.66919 4.75226 4.77145 4.99426 5.21794 5.28591 5.42553 5.46382 5.50613 5.65922 5.75206 5.80533 5.91979 5.99482 6.01963 6.16918 6.21237 6.44524 6.55880 6.69022 7.09184 7.80827 7.82367 7.99663 8.11292 8.70975 9.07415 9.39252 10.43229 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012104 B = 0.004337 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.781006 B = 6454.608063 C = 7388.207981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.075 3.925 3 Si 0.867 3.133 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.362 4.362 8 H 0.109 0.891 9 N -0.453 5.453 10 C 0.115 3.885 11 C -0.122 4.122 12 C 0.484 3.516 13 O -0.518 6.518 14 O -0.520 6.520 15 C 0.480 3.520 16 O -0.583 6.583 17 C -0.107 4.107 18 C 0.027 3.973 19 C -0.106 4.106 20 C -0.055 4.055 21 C -0.152 4.152 22 C 0.145 3.855 23 F -0.125 7.125 24 C -0.051 4.051 25 N 0.018 4.982 26 O -0.142 6.142 27 O -0.114 6.114 28 H 0.279 0.721 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.404 0.596 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.916 -11.257 0.131 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.135 4.135 3 Si 0.693 3.307 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.488 4.488 8 H 0.126 0.874 9 N -0.173 5.173 10 C -0.008 4.008 11 C -0.161 4.161 12 C 0.326 3.674 13 O -0.406 6.406 14 O -0.332 6.332 15 C 0.269 3.731 16 O -0.468 6.468 17 C -0.146 4.146 18 C 0.026 3.974 19 C -0.125 4.125 20 C -0.073 4.073 21 C -0.171 4.171 22 C 0.124 3.876 23 F -0.103 7.103 24 C -0.132 4.132 25 N 0.550 4.450 26 O -0.362 6.362 27 O -0.342 6.342 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.262 0.738 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.380 -11.874 0.156 14.534 hybrid contribution 0.392 1.878 -0.204 1.929 sum 8.772 -9.996 -0.048 13.299 Atomic orbital electron populations 1.69717 1.06283 1.28747 1.43469 1.25317 0.95143 0.98758 0.94263 0.87072 0.81723 0.83201 0.78672 1.19448 1.21016 1.17653 1.19093 0.84482 0.96754 1.48482 0.87378 1.43616 1.09389 1.37104 1.27145 1.21448 1.01493 0.93242 0.84604 1.21727 1.04934 0.99177 0.90223 1.23690 0.73959 0.86516 0.83235 1.90712 1.43404 1.21726 1.84765 1.84574 1.79819 1.50898 1.17870 1.19827 0.84633 0.83920 0.84692 1.90618 1.19829 1.68912 1.67426 1.20750 0.94710 1.00299 0.98855 1.19331 0.93906 0.94005 0.90193 1.21150 0.98716 0.92591 1.00025 1.21283 0.92329 1.00474 0.93240 1.21097 1.02757 0.92015 1.01230 1.17142 0.87677 0.91832 0.90945 1.91584 1.69840 1.82934 1.65984 1.20827 1.01423 0.83780 1.07191 1.43296 0.99227 1.02703 0.99802 1.94548 1.34362 1.90184 1.17091 1.94638 1.50228 1.37060 1.52246 0.91058 0.90591 0.89904 0.87420 0.86664 0.73819 0.87642 0.86469 0.83076 0.83236 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.30 13.96 55.50 0.77 -21.53 16 2 C 0.08 1.91 5.35 -17.47 -0.09 1.81 16 3 Si 0.87 20.81 24.83 -169.99 -4.22 16.59 16 4 H -0.27 -6.37 6.71 56.52 0.38 -6.00 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.25 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.36 -8.73 9.03 -14.93 -0.13 -8.86 16 8 H 0.11 2.63 7.35 -52.49 -0.39 2.24 16 9 N -0.45 -10.26 2.21 -114.81 -0.25 -10.51 16 10 C 0.12 2.53 3.44 -4.04 -0.01 2.52 16 11 C -0.12 -2.21 6.13 -27.89 -0.17 -2.38 16 12 C 0.48 8.32 8.33 36.00 0.30 8.62 16 13 O -0.52 -10.50 16.74 -18.75 -0.31 -10.81 16 14 O -0.52 -6.87 13.42 -39.27 -0.53 -7.40 16 15 C 0.48 10.34 7.61 -10.99 -0.08 10.26 16 16 O -0.58 -13.46 15.68 5.55 0.09 -13.37 16 17 C -0.11 -1.92 4.25 -29.03 -0.12 -2.04 16 18 C 0.03 0.43 4.38 -104.64 -0.46 -0.03 16 19 C -0.11 -1.22 9.68 -39.58 -0.38 -1.61 16 20 C -0.06 -0.49 10.04 -39.59 -0.40 -0.89 16 21 C -0.15 -1.54 10.03 -39.52 -0.40 -1.94 16 22 C 0.14 2.08 7.30 -39.42 -0.29 1.79 16 23 F -0.13 -1.89 17.10 2.25 0.04 -1.85 16 24 C -0.05 -0.87 6.13 -79.89 -0.49 -1.36 16 25 N 0.02 0.36 3.20 33.99 0.11 0.47 16 26 O -0.14 -2.84 19.16 -29.46 -0.56 -3.41 16 27 O -0.11 -2.54 19.25 -29.46 -0.57 -3.11 16 28 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.08 1.78 2.91 -51.93 -0.15 1.63 16 30 H 0.08 1.90 7.46 -51.93 -0.39 1.52 16 31 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 32 H 0.12 2.03 8.14 -51.93 -0.42 1.60 16 33 H 0.40 3.41 9.10 45.56 0.41 3.82 16 34 H 0.11 2.07 7.39 -51.93 -0.38 1.69 16 35 H 0.12 1.79 7.68 -51.92 -0.40 1.39 16 36 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 348.83 15.07 5.26 5.26 Total: -1.00 -32.81 348.83 -5.48 -38.29 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.56 Total: 5.48 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -2.73 Total: 5.90 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.63 Total: -31.57 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.89 Total: -38.10 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.22 Total: 16.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.81 -5.48 -38.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.643 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds