Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99446 * 2 1 4 4 H 1.48508 * 109.47000 * 274.71822 * 3 2 1 5 5 H 1.48495 * 109.47434 * 34.71883 * 3 2 1 6 6 H 1.48497 * 109.47222 * 154.72279 * 3 2 1 7 7 C 1.38983 * 120.00447 * 179.72413 * 2 1 3 8 8 H 1.08001 * 119.99730 * 156.72741 * 7 2 1 9 9 N 1.36947 * 119.99793 * 336.72133 * 7 2 1 10 10 C 1.46499 * 119.99508 * 143.56979 * 9 7 2 11 11 C 1.53001 * 109.47426 * 92.32428 * 10 9 7 12 12 C 1.50694 * 109.47125 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00419 * 359.97438 * 12 11 10 14 14 O 1.34236 * 119.99703 * 180.02562 * 12 11 10 15 15 C 1.34770 * 120.00261 * 323.56950 * 9 7 2 16 16 O 1.21659 * 120.00083 * 5.27400 * 15 9 7 17 17 C 1.47177 * 120.00148 * 185.27318 * 15 9 7 18 18 C 1.35295 * 123.15556 * 186.60135 * 17 15 9 19 19 S 1.70942 * 108.82262 * 179.97438 * 18 17 15 20 20 C 1.70764 * 91.13754 * 359.97438 * 19 18 17 21 21 C 1.50700 * 124.71513 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.87336 * 166.80125 * 21 20 19 23 23 C 1.54097 * 109.88126 * 287.80917 * 21 20 19 24 24 C 1.54804 * 104.19045 * 121.45035 * 23 21 20 25 25 C 1.54988 * 102.09109 * 20.88272 * 24 23 21 26 26 O 1.43749 * 109.87706 * 45.79314 * 21 20 19 27 27 N 1.28657 * 110.57692 * 359.76797 * 20 19 18 28 28 H 0.96994 * 120.00478 * 5.30405 * 1 2 3 29 29 H 1.09003 * 109.46915 * 212.32012 * 10 9 7 30 30 H 1.08995 * 109.47362 * 332.31885 * 10 9 7 31 31 H 1.09003 * 109.46734 * 299.99695 * 11 10 9 32 32 H 1.08995 * 109.47294 * 59.99416 * 11 10 9 33 33 H 0.96702 * 116.99507 * 180.02562 * 14 12 11 34 34 H 1.08001 * 125.59198 * 359.97438 * 18 17 15 35 35 H 1.08998 * 110.48862 * 240.13212 * 23 21 20 36 36 H 1.09005 * 110.48488 * 2.77568 * 23 21 20 37 37 H 1.09001 * 110.90732 * 139.08459 * 24 23 21 38 38 H 1.09010 * 110.91076 * 262.65117 * 24 23 21 39 39 H 1.08996 * 110.62251 * 81.47789 * 25 24 23 40 40 H 1.09009 * 110.61844 * 204.47524 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3957 2.1041 -1.3954 5 1 1.4988 2.6219 0.7974 6 1 3.5919 1.4137 0.5978 7 6 2.0091 -1.2036 0.0058 8 1 3.0232 -1.2433 -0.3636 9 7 1.4080 -2.3390 0.4800 10 6 1.6768 -3.6306 -0.1570 11 6 2.8425 -4.3184 0.5565 12 6 3.1194 -5.6467 -0.0991 13 8 2.4525 -6.0067 -1.0402 14 8 4.1063 -6.4305 0.3630 15 6 0.5693 -2.2683 1.5325 16 8 0.2710 -1.1858 2.0009 17 6 0.0142 -3.5005 2.1153 18 6 -0.9299 -3.5006 3.0844 19 16 -1.3067 -5.1186 3.4871 20 6 -0.1843 -5.7014 2.3396 21 6 0.0901 -7.1586 2.0710 22 1 0.6620 -7.2641 1.1490 23 6 0.8756 -7.7696 3.2475 24 6 -0.0251 -8.9260 3.7454 25 6 -0.9200 -9.1958 2.5091 26 8 -1.1499 -7.8775 1.9620 27 7 0.3907 -4.7236 1.7325 28 1 -0.4850 0.8364 -0.0776 29 1 0.7890 -4.2596 -0.0917 30 1 1.9341 -3.4728 -1.2043 31 1 3.7304 -3.6894 0.4913 32 1 2.5853 -4.4763 1.6038 33 1 4.2463 -7.2732 -0.0902 34 1 -1.3729 -2.6224 3.5305 35 1 1.8365 -8.1543 2.9059 36 1 1.0180 -7.0304 4.0359 37 1 0.5710 -9.8042 3.9933 38 1 -0.6252 -8.6117 4.5995 39 1 -0.3978 -9.8232 1.7868 40 1 -1.8611 -9.6565 2.8096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -90.919588 kcal Electronic energy + Delta-G solvation = -28445.327781 eV Core-core repulsion = 24353.676541 eV Total energy + Delta-G solvation = -4091.651240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24860 -39.78067 -39.23658 -37.41365 -35.89867 -34.49966 -32.46524 -32.24156 -31.22722 -29.96910 -28.43074 -26.06829 -24.59538 -23.93369 -22.67767 -21.87137 -20.78269 -20.25190 -19.12906 -18.27496 -17.81221 -16.69793 -16.42744 -16.21026 -15.98596 -15.59437 -15.27352 -15.10119 -14.54848 -14.36207 -14.07531 -13.87923 -13.63699 -13.21305 -12.93909 -12.83399 -12.65494 -12.26879 -11.99563 -11.82185 -11.55121 -11.51057 -11.32063 -11.28019 -11.13836 -11.01883 -10.87408 -10.64994 -10.47326 -10.21728 -10.20647 -10.02225 -9.23895 -9.05920 -8.95493 -8.33584 -8.18397 -7.12340 -6.14192 -3.82632 0.98972 1.65903 2.11374 2.58088 2.70937 3.30191 3.35946 3.40325 3.43302 3.58962 4.17808 4.28773 4.32632 4.64058 4.71004 4.74908 5.00978 5.02268 5.20615 5.26418 5.39784 5.43245 5.52831 5.54401 5.56770 5.70813 5.73320 5.78241 5.81790 5.94106 6.07737 6.25073 6.47476 6.61290 6.63412 6.73569 7.01876 7.55143 7.91071 8.17637 8.21834 8.96295 9.12970 9.59205 10.26006 10.92048 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.004422 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.463406 B = 6330.075457 C = 7807.183027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.283 1.283 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.349 4.349 8 H 0.087 0.913 9 N -0.425 5.425 10 C 0.125 3.875 11 C -0.116 4.116 12 C 0.486 3.514 13 O -0.517 6.517 14 O -0.525 6.525 15 C 0.511 3.489 16 O -0.520 6.520 17 C 0.047 3.953 18 C -0.247 4.247 19 S 0.185 5.815 20 C 0.006 3.994 21 C 0.159 3.841 22 H 0.096 0.904 23 C -0.147 4.147 24 C -0.155 4.155 25 C 0.045 3.955 26 O -0.365 6.365 27 N -0.429 5.429 28 H 0.265 0.735 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.399 0.601 34 H 0.182 0.818 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.652 -18.634 7.354 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.476 4.476 8 H 0.105 0.895 9 N -0.144 5.144 10 C 0.000 4.000 11 C -0.155 4.155 12 C 0.329 3.671 13 O -0.405 6.405 14 O -0.336 6.336 15 C 0.297 3.703 16 O -0.397 6.397 17 C -0.087 4.087 18 C -0.388 4.388 19 S 0.441 5.559 20 C -0.273 4.273 21 C 0.098 3.902 22 H 0.114 0.886 23 C -0.186 4.186 24 C -0.193 4.193 25 C -0.032 4.032 26 O -0.283 6.283 27 N -0.147 5.147 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.257 0.743 34 H 0.199 0.801 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.588 -18.136 7.778 19.743 hybrid contribution 0.970 0.936 -0.751 1.543 sum 1.557 -17.200 7.027 18.645 Atomic orbital electron populations 1.69937 1.06845 1.27701 1.38899 1.25175 0.94702 0.99456 0.95350 0.86164 0.79890 0.82281 0.77596 1.20910 1.20863 1.19481 1.19171 0.97487 0.85318 1.45594 0.89486 1.43137 1.40904 1.05489 1.24855 1.21451 0.96815 0.86289 0.95488 1.21835 1.02098 0.89014 1.02522 1.23806 0.75688 0.86498 0.81134 1.90685 1.48003 1.73797 1.27972 1.84613 1.53357 1.34155 1.61510 1.16664 0.85605 0.85221 0.82827 1.90669 1.60498 1.27043 1.61532 1.21307 0.97550 0.92249 0.97609 1.26455 1.04539 1.02448 1.05404 1.82420 1.39310 0.96829 1.37387 1.26884 1.01198 0.99151 1.00042 1.20940 0.85801 0.84139 0.99338 0.88609 1.23043 0.99439 0.98299 0.97800 1.23161 0.98423 0.98699 0.98980 1.23642 1.00358 0.85382 0.93820 1.89015 1.31319 1.24974 1.82982 1.67379 1.25705 0.98224 1.23415 0.92435 0.89044 0.91312 0.88482 0.87566 0.74314 0.80058 0.89576 0.89812 0.89790 0.90145 0.91748 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -23.94 11.18 55.50 0.62 -23.32 16 2 C 0.07 1.86 4.25 -17.46 -0.07 1.78 16 3 Si 0.91 21.68 29.62 -169.99 -5.03 16.65 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.35 -9.56 9.33 -14.99 -0.14 -9.70 16 8 H 0.09 2.24 7.94 -52.49 -0.42 1.82 16 9 N -0.42 -10.98 2.55 -116.12 -0.30 -11.27 16 10 C 0.12 2.71 4.20 -4.04 -0.02 2.70 16 11 C -0.12 -2.07 5.53 -27.89 -0.15 -2.22 16 12 C 0.49 7.72 8.33 36.00 0.30 8.02 16 13 O -0.52 -9.49 16.74 -18.75 -0.31 -9.81 16 14 O -0.52 -6.35 13.42 -39.27 -0.53 -6.87 16 15 C 0.51 13.57 7.08 -12.63 -0.09 13.48 16 16 O -0.52 -15.57 13.61 5.23 0.07 -15.49 16 17 C 0.05 1.02 6.38 -84.53 -0.54 0.48 16 18 C -0.25 -4.68 10.62 29.68 0.32 -4.36 16 19 S 0.19 2.71 22.77 -107.50 -2.45 0.26 16 20 C 0.01 0.09 6.08 -13.61 -0.08 0.01 16 21 C 0.16 2.08 3.93 -27.31 -0.11 1.97 16 22 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 23 C -0.15 -1.40 6.63 -25.21 -0.17 -1.57 16 24 C -0.15 -1.13 7.16 -24.73 -0.18 -1.30 16 25 C 0.04 0.38 7.72 38.21 0.29 0.67 16 26 O -0.36 -4.72 11.05 -35.23 -0.39 -5.11 16 27 N -0.43 -8.19 5.01 -8.51 -0.04 -8.23 16 28 H 0.27 7.54 8.32 -40.82 -0.34 7.20 16 29 H 0.09 2.07 5.54 -51.93 -0.29 1.78 16 30 H 0.07 1.53 7.98 -51.93 -0.41 1.11 16 31 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.11 1.92 6.55 -51.93 -0.34 1.58 16 33 H 0.40 2.94 9.10 45.56 0.41 3.36 16 34 H 0.18 3.40 8.04 -52.49 -0.42 2.97 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -35.46 352.67 -7.64 -43.11 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.96 Total: 4.81 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -0.64 Total: 9.96 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.28 Total: -42.82 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.16 Total: -37.28 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.45 Total: 0.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.46 -7.64 -43.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.811 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds