Wall clock time and date at job start Sat Apr 11 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99446 * 2 1 4 4 H 1.48508 * 109.47000 * 274.71822 * 3 2 1 5 5 H 1.48495 * 109.47434 * 34.71883 * 3 2 1 6 6 H 1.48497 * 109.47222 * 154.72279 * 3 2 1 7 7 C 1.38983 * 120.00447 * 179.72413 * 2 1 3 8 8 H 1.08001 * 119.99730 * 156.72741 * 7 2 1 9 9 N 1.36947 * 119.99793 * 336.72133 * 7 2 1 10 10 C 1.46499 * 119.99508 * 143.56979 * 9 7 2 11 11 C 1.53001 * 109.47426 * 92.32428 * 10 9 7 12 12 C 1.50694 * 109.47125 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00419 * 359.97438 * 12 11 10 14 14 O 1.34236 * 119.99703 * 180.02562 * 12 11 10 15 15 C 1.34770 * 120.00261 * 323.56950 * 9 7 2 16 16 O 1.21659 * 120.00083 * 5.27400 * 15 9 7 17 17 C 1.47177 * 120.00148 * 185.27318 * 15 9 7 18 18 C 1.35295 * 123.15556 * 186.60135 * 17 15 9 19 19 S 1.70942 * 108.82262 * 179.97438 * 18 17 15 20 20 C 1.70764 * 91.13754 * 359.97438 * 19 18 17 21 21 C 1.50700 * 124.71513 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.87336 * 166.80125 * 21 20 19 23 23 C 1.54097 * 109.88126 * 287.80917 * 21 20 19 24 24 C 1.54804 * 104.19045 * 121.45035 * 23 21 20 25 25 C 1.54988 * 102.09109 * 20.88272 * 24 23 21 26 26 O 1.43749 * 109.87706 * 45.79314 * 21 20 19 27 27 N 1.28657 * 110.57692 * 359.76797 * 20 19 18 28 28 H 0.96994 * 120.00478 * 5.30405 * 1 2 3 29 29 H 1.09003 * 109.46915 * 212.32012 * 10 9 7 30 30 H 1.08995 * 109.47362 * 332.31885 * 10 9 7 31 31 H 1.09003 * 109.46734 * 299.99695 * 11 10 9 32 32 H 1.08995 * 109.47294 * 59.99416 * 11 10 9 33 33 H 0.96702 * 116.99507 * 180.02562 * 14 12 11 34 34 H 1.08001 * 125.59198 * 359.97438 * 18 17 15 35 35 H 1.08998 * 110.48862 * 240.13212 * 23 21 20 36 36 H 1.09005 * 110.48488 * 2.77568 * 23 21 20 37 37 H 1.09001 * 110.90732 * 139.08459 * 24 23 21 38 38 H 1.09010 * 110.91076 * 262.65117 * 24 23 21 39 39 H 1.08996 * 110.62251 * 81.47789 * 25 24 23 40 40 H 1.09009 * 110.61844 * 204.47524 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3957 2.1041 -1.3954 5 1 1.4988 2.6219 0.7974 6 1 3.5919 1.4137 0.5978 7 6 2.0091 -1.2036 0.0058 8 1 3.0232 -1.2433 -0.3636 9 7 1.4080 -2.3390 0.4800 10 6 1.6768 -3.6306 -0.1570 11 6 2.8425 -4.3184 0.5565 12 6 3.1194 -5.6467 -0.0991 13 8 2.4525 -6.0067 -1.0402 14 8 4.1063 -6.4305 0.3630 15 6 0.5693 -2.2683 1.5325 16 8 0.2710 -1.1858 2.0009 17 6 0.0142 -3.5005 2.1153 18 6 -0.9299 -3.5006 3.0844 19 16 -1.3067 -5.1186 3.4871 20 6 -0.1843 -5.7014 2.3396 21 6 0.0901 -7.1586 2.0710 22 1 0.6620 -7.2641 1.1490 23 6 0.8756 -7.7696 3.2475 24 6 -0.0251 -8.9260 3.7454 25 6 -0.9200 -9.1958 2.5091 26 8 -1.1499 -7.8775 1.9620 27 7 0.3907 -4.7236 1.7325 28 1 -0.4850 0.8364 -0.0776 29 1 0.7890 -4.2596 -0.0917 30 1 1.9341 -3.4728 -1.2043 31 1 3.7304 -3.6894 0.4913 32 1 2.5853 -4.4763 1.6038 33 1 4.2463 -7.2732 -0.0902 34 1 -1.3729 -2.6224 3.5305 35 1 1.8365 -8.1543 2.9059 36 1 1.0180 -7.0304 4.0359 37 1 0.5710 -9.8042 3.9933 38 1 -0.6252 -8.6117 4.5995 39 1 -0.3978 -9.8232 1.7868 40 1 -1.8611 -9.6565 2.8096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:19 Heat of formation + Delta-G solvation = -116.524596 kcal Electronic energy + Delta-G solvation = -28446.438098 eV Core-core repulsion = 24353.676541 eV Total energy + Delta-G solvation = -4092.761557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67831 -40.99951 -40.36614 -39.14700 -37.12857 -36.38524 -34.26279 -33.25061 -32.38320 -31.68197 -29.59766 -27.88012 -26.17075 -25.36826 -23.91502 -22.77602 -22.05057 -21.58599 -20.82038 -19.82460 -19.09287 -18.09161 -17.68214 -17.58234 -17.18509 -16.81889 -16.77479 -16.40093 -16.18633 -15.94050 -15.71586 -15.05592 -14.82395 -14.56556 -14.44746 -14.23604 -13.96703 -13.93381 -13.36187 -13.16546 -12.77421 -12.75505 -12.72609 -12.64929 -12.57737 -12.45947 -12.16317 -12.14395 -12.01758 -11.68535 -11.55660 -11.00515 -10.94319 -10.57294 -10.46708 -10.23275 -9.73210 -9.18675 -8.23463 -5.96785 -0.41545 0.33656 0.70383 1.16213 1.30896 1.40142 1.47822 1.55832 2.12129 2.35709 2.55604 2.82517 3.15139 3.24000 3.34951 3.55973 3.88749 3.90334 4.07212 4.11537 4.16366 4.25018 4.34213 4.39980 4.51972 4.61151 4.73721 4.78547 4.84412 4.88728 4.96235 4.99120 5.07184 5.19694 5.28615 5.45053 5.67305 5.80822 6.10552 6.49909 6.91915 7.09470 7.14247 7.57144 8.25812 8.84346 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.004422 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.463406 B = 6330.075457 C = 7807.183027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.016 3.984 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.259 1.259 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.439 5.439 10 C 0.131 3.869 11 C -0.106 4.106 12 C 0.503 3.497 13 O -0.544 6.544 14 O -0.508 6.508 15 C 0.503 3.497 16 O -0.568 6.568 17 C 0.016 3.984 18 C -0.262 4.262 19 S 0.294 5.706 20 C -0.003 4.003 21 C 0.158 3.842 22 H 0.083 0.917 23 C -0.144 4.144 24 C -0.145 4.145 25 C 0.036 3.964 26 O -0.390 6.390 27 N -0.446 5.446 28 H 0.261 0.739 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.426 0.574 34 H 0.177 0.823 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -21.804 8.805 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.498 4.498 8 H 0.115 0.885 9 N -0.158 5.158 10 C 0.007 3.993 11 C -0.145 4.145 12 C 0.346 3.654 13 O -0.434 6.434 14 O -0.322 6.322 15 C 0.290 3.710 16 O -0.449 6.449 17 C -0.119 4.119 18 C -0.405 4.405 19 S 0.550 5.450 20 C -0.281 4.281 21 C 0.097 3.903 22 H 0.101 0.899 23 C -0.183 4.183 24 C -0.183 4.183 25 C -0.040 4.040 26 O -0.309 6.309 27 N -0.164 5.164 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.287 0.713 34 H 0.194 0.806 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.556 -21.391 9.219 23.345 hybrid contribution 0.606 1.645 -1.110 2.075 sum 2.162 -19.746 8.109 21.456 Atomic orbital electron populations 1.70067 1.08634 1.28025 1.41551 1.26118 0.95369 1.02987 0.94766 0.85152 0.78635 0.77638 0.78182 1.19100 1.21977 1.18309 1.19572 0.98113 0.86337 1.45822 0.88517 1.43343 1.40892 1.06466 1.25064 1.21379 0.98131 0.84895 0.94914 1.21508 1.00518 0.90392 1.02086 1.23120 0.75948 0.86037 0.80276 1.90690 1.49275 1.74339 1.29140 1.84518 1.51297 1.35244 1.61116 1.17294 0.84872 0.86339 0.82477 1.90608 1.61913 1.29336 1.63045 1.20739 0.99753 0.91990 0.99397 1.26692 1.03675 1.05622 1.04472 1.81981 1.36491 0.91909 1.34577 1.27573 1.00658 1.00224 0.99630 1.21026 0.86401 0.82441 1.00425 0.89920 1.23079 1.00168 0.98875 0.96182 1.23177 0.97997 0.98736 0.98357 1.23958 1.01894 0.83570 0.94543 1.88983 1.31275 1.27024 1.83665 1.67289 1.27045 0.97618 1.24489 0.92955 0.89910 0.92678 0.87977 0.87537 0.71280 0.80604 0.87935 0.90165 0.87040 0.89613 0.90642 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -53.36 11.18 21.67 0.24 -53.11 16 2 C 0.02 0.92 4.25 84.93 0.36 1.28 16 3 Si 0.98 45.95 29.62 68.60 2.03 47.98 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.37 -21.12 9.33 84.07 0.78 -20.33 16 8 H 0.10 5.10 7.94 -2.91 -0.02 5.08 16 9 N -0.44 -23.71 2.55 -639.52 -1.63 -25.34 16 10 C 0.13 5.92 4.20 86.38 0.36 6.28 16 11 C -0.11 -3.80 5.53 29.85 0.16 -3.63 16 12 C 0.50 15.34 8.33 71.23 0.59 15.93 16 13 O -0.54 -19.62 16.74 21.98 0.37 -19.25 16 14 O -0.51 -10.79 13.42 -51.48 -0.69 -11.48 16 15 C 0.50 28.03 7.08 86.59 0.61 28.64 16 16 O -0.57 -35.92 13.61 -4.22 -0.06 -35.98 16 17 C 0.02 0.71 6.38 40.55 0.26 0.97 16 18 C -0.26 -10.03 10.62 67.14 0.71 -9.32 16 19 S 0.29 7.98 22.77 -56.49 -1.29 6.70 16 20 C 0.00 -0.08 6.08 88.57 0.54 0.45 16 21 C 0.16 3.80 3.93 30.22 0.12 3.92 16 22 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 23 C -0.14 -2.25 6.63 31.58 0.21 -2.04 16 24 C -0.15 -1.48 7.16 31.89 0.23 -1.25 16 25 C 0.04 0.47 7.72 72.66 0.56 1.04 16 26 O -0.39 -9.12 11.05 -148.98 -1.65 -10.76 16 27 N -0.45 -17.11 5.01 -180.84 -0.91 -18.02 16 28 H 0.26 15.68 8.32 -92.71 -0.77 14.91 16 29 H 0.08 3.89 5.54 -2.39 -0.01 3.88 16 30 H 0.05 2.56 7.98 -2.39 -0.02 2.54 16 31 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.11 3.84 6.55 -2.39 -0.02 3.82 16 33 H 0.43 4.71 9.10 -74.06 -0.67 4.03 16 34 H 0.18 6.81 8.04 -2.91 -0.02 6.78 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.33 7.69 -2.38 -0.02 1.31 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -82.22 352.67 2.36 -79.87 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.43 Total: 17.46 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 5.51 Total: 21.94 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -2.30 Total: -96.47 kcal Atomic # 8 Polarization: -75.44 SS G_CDS: -2.03 Total: -77.47 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -1.29 Total: 6.70 kcal Total: -82.22 2.36 -79.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.657 kcal (2) G-P(sol) polarization free energy of solvation -82.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds