Wall clock time and date at job start Sat Apr 11 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99762 * 2 1 4 4 H 1.48505 * 109.46893 * 269.99423 * 3 2 1 5 5 H 1.48492 * 109.47466 * 29.99882 * 3 2 1 6 6 H 1.48499 * 109.46944 * 150.00090 * 3 2 1 7 7 C 1.38811 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00109 * 187.73388 * 7 2 1 9 9 N 1.36947 * 119.99776 * 7.72531 * 7 2 1 10 10 C 1.46500 * 119.99574 * 157.80926 * 9 7 2 11 11 C 1.52997 * 109.46668 * 274.33318 * 10 9 7 12 12 C 1.50705 * 109.46817 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00159 * 0.02562 * 12 11 10 14 14 O 1.34234 * 120.00152 * 180.02562 * 12 11 10 15 15 C 1.46494 * 119.99858 * 337.80884 * 9 7 2 16 16 C 1.50697 * 109.47062 * 90.00226 * 15 9 7 17 17 O 1.21273 * 120.00217 * 359.97438 * 16 15 9 18 18 N 1.34784 * 119.99865 * 179.97438 * 16 15 9 19 19 C 1.46504 * 119.99715 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46814 * 179.97438 * 19 18 16 21 21 O 1.21448 * 119.99655 * 0.02562 * 20 19 18 22 22 C 1.41225 * 119.99677 * 179.97438 * 20 19 18 23 23 C 1.37184 * 125.48039 * 179.97438 * 22 20 19 24 24 C 1.37204 * 113.24567 * 180.02562 * 23 22 20 25 25 C 1.34017 * 115.14450 * 0.02562 * 24 23 22 26 26 S 1.70609 * 111.00245 * 359.72340 * 25 24 23 27 27 H 0.96994 * 119.99816 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47176 * 34.33228 * 10 9 7 29 29 H 1.08999 * 109.47116 * 154.33625 * 10 9 7 30 30 H 1.08995 * 109.47361 * 299.99773 * 11 10 9 31 31 H 1.09002 * 109.47493 * 60.00941 * 11 10 9 32 32 H 0.96702 * 116.99614 * 180.02562 * 14 12 11 33 33 H 1.09001 * 109.47746 * 329.99502 * 15 9 7 34 34 H 1.09005 * 109.46860 * 209.99945 * 15 9 7 35 35 H 0.96991 * 119.99955 * 359.97438 * 18 16 15 36 36 H 1.08995 * 109.46900 * 299.99548 * 19 18 16 37 37 H 1.08995 * 109.46894 * 60.00043 * 19 18 16 38 38 H 1.08003 * 123.37787 * 359.97091 * 23 22 20 39 39 H 1.07998 * 122.42577 * 180.02562 * 24 23 22 40 40 H 1.08004 * 124.49694 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0830 -1.2063 0.1264 9 7 1.3349 -2.3828 -0.1584 10 6 2.0422 -3.5723 -0.6390 11 6 2.0676 -3.5671 -2.1687 12 6 2.7946 -4.7910 -2.6632 13 8 3.2458 -5.5861 -1.8732 14 8 2.9411 -4.9979 -3.9814 15 6 -0.0949 -2.4562 0.1523 16 6 -0.8946 -2.1241 -1.0810 17 8 -0.3262 -1.8523 -2.1173 18 7 -2.2415 -2.1291 -1.0324 19 6 -3.0189 -1.8057 -2.2313 20 6 -4.4898 -1.8826 -1.9121 21 8 -4.8532 -2.1784 -0.7916 22 6 -5.4453 -1.6096 -2.9155 23 6 -6.8066 -1.6467 -2.7500 24 6 -7.4997 -1.3384 -3.8932 25 6 -6.7404 -1.0582 -4.9614 26 16 -5.0815 -1.1620 -4.5766 27 1 -0.4849 0.8400 -0.0004 28 1 3.0637 -3.5660 -0.2586 29 1 1.5289 -4.4672 -0.2872 30 1 1.0461 -3.5733 -2.5491 31 1 2.5810 -2.6722 -2.5207 32 1 3.4144 -5.7971 -4.2504 33 1 -0.3322 -1.7436 0.9421 34 1 -0.3429 -3.4640 0.4857 35 1 -2.6961 -2.3469 -0.2037 36 1 -2.7712 -0.7977 -2.5639 37 1 -2.7813 -2.5178 -3.0215 38 1 -7.2848 -1.8946 -1.8139 39 1 -8.5790 -1.3226 -3.9296 40 1 -7.1273 -0.7963 -5.9352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:22 Heat of formation + Delta-G solvation = -95.155765 kcal Electronic energy + Delta-G solvation = -26984.905041 eV Core-core repulsion = 22893.070106 eV Total energy + Delta-G solvation = -4091.834935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -39.91572 -39.73847 -38.23839 -37.45237 -35.89535 -35.30141 -33.32532 -32.03432 -30.87765 -29.82496 -28.21347 -26.39017 -24.81579 -24.50407 -21.89453 -21.06867 -20.00148 -19.57132 -19.28477 -17.72078 -17.68746 -16.91466 -16.30911 -16.08556 -15.69945 -15.50566 -15.44623 -15.02758 -14.78308 -14.33815 -13.84835 -13.75870 -13.44403 -13.20324 -13.03290 -12.90626 -12.78278 -12.41169 -12.29160 -12.11238 -11.86824 -11.46674 -11.15674 -11.11386 -10.99598 -10.91655 -10.51680 -10.16968 -10.07725 -9.96967 -9.91885 -9.83213 -9.13570 -8.86688 -8.85303 -8.32941 -8.10866 -6.91939 -5.85551 -3.27248 0.08331 1.27682 1.67675 1.98472 2.70548 2.79347 3.37709 3.44804 3.45752 3.59099 3.83039 4.21338 4.37213 4.54681 4.67518 5.03804 5.14238 5.22463 5.37951 5.46697 5.63337 5.69524 5.76588 5.79314 5.94007 5.94882 6.04337 6.16213 6.37362 6.48243 6.70101 6.72084 6.84710 7.06475 7.31302 7.34415 7.48717 7.71876 8.26212 8.35889 8.64014 9.12960 9.65623 9.79245 10.19958 11.20716 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.003342 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.879717 B = 8375.136818 C = 9929.659489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.012 3.988 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.164 3.836 11 C -0.131 4.131 12 C 0.477 3.523 13 O -0.531 6.531 14 O -0.524 6.524 15 C 0.163 3.837 16 C 0.534 3.466 17 O -0.543 6.543 18 N -0.741 5.741 19 C 0.081 3.919 20 C 0.418 3.582 21 O -0.447 6.447 22 C -0.302 4.302 23 C -0.047 4.047 24 C -0.159 4.159 25 C -0.232 4.232 26 S 0.243 5.757 27 H 0.255 0.745 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.396 0.604 33 H 0.123 0.877 34 H 0.031 0.969 35 H 0.398 0.602 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 -4.448 -9.158 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.290 5.290 10 C 0.036 3.964 11 C -0.172 4.172 12 C 0.321 3.679 13 O -0.421 6.421 14 O -0.335 6.335 15 C 0.033 3.967 16 C 0.321 3.679 17 O -0.418 6.418 18 N -0.399 5.399 19 C -0.045 4.045 20 C 0.296 3.704 21 O -0.324 6.324 22 C -0.420 4.420 23 C -0.081 4.081 24 C -0.190 4.190 25 C -0.370 4.370 26 S 0.511 5.489 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.253 0.747 33 H 0.140 0.860 34 H 0.049 0.951 35 H 0.233 0.767 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.059 -3.862 -9.778 15.258 hybrid contribution -1.151 0.428 0.351 1.277 sum -12.209 -3.435 -9.427 15.803 Atomic orbital electron populations 1.69661 1.05238 1.25407 1.54975 1.24939 0.95582 0.98050 0.99951 0.86153 0.78871 0.83233 0.77619 1.21470 1.21859 1.20588 1.19280 0.92099 0.83246 1.43132 0.90541 1.43832 1.04318 1.07735 1.73113 1.20754 0.97360 0.89715 0.88541 1.22529 1.01493 0.91979 1.01185 1.24577 0.76316 0.87964 0.79059 1.90643 1.47706 1.47299 1.56427 1.84680 1.72693 1.48220 1.27893 1.20797 0.83040 0.98068 0.94807 1.22092 0.79891 0.74207 0.91663 1.90465 1.69869 1.48387 1.33122 1.46008 1.07125 1.74908 1.11813 1.21293 0.88198 1.03051 0.91928 1.20345 0.90669 0.72882 0.86504 1.90566 1.83184 1.36108 1.22564 1.24164 0.98772 1.18469 1.00643 1.21022 0.91615 0.95634 0.99821 1.20047 1.01768 1.05142 0.92044 1.25598 0.99578 1.07483 1.04340 1.83407 1.02952 1.60543 1.01952 0.93400 0.92693 0.93325 0.87400 0.87797 0.74687 0.85970 0.95090 0.76693 0.88934 0.89402 0.82939 0.83846 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.21 8.21 55.49 0.46 -23.75 16 2 C 0.01 0.31 5.41 -17.43 -0.09 0.22 16 3 Si 0.91 21.54 29.56 -169.99 -5.02 16.52 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.50 9.70 -15.06 -0.15 -6.65 16 8 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 9 N -0.57 -13.64 2.07 -174.61 -0.36 -14.01 16 10 C 0.16 3.44 5.01 -4.04 -0.02 3.42 16 11 C -0.13 -2.60 5.55 -27.88 -0.15 -2.75 16 12 C 0.48 8.44 8.33 36.01 0.30 8.74 16 13 O -0.53 -10.37 16.74 -18.75 -0.31 -10.68 16 14 O -0.52 -7.64 13.42 -39.27 -0.53 -8.17 16 15 C 0.16 3.66 5.47 -5.20 -0.03 3.63 16 16 C 0.53 11.94 5.79 -10.98 -0.06 11.88 16 17 O -0.54 -13.67 13.89 5.56 0.08 -13.60 16 18 N -0.74 -14.02 5.53 -61.47 -0.34 -14.36 16 19 C 0.08 1.33 5.45 -5.19 -0.03 1.30 16 20 C 0.42 6.13 7.00 -33.17 -0.23 5.90 16 21 O -0.45 -7.46 16.04 5.41 0.09 -7.37 16 22 C -0.30 -3.65 6.23 -38.83 -0.24 -3.89 16 23 C -0.05 -0.50 9.95 -40.34 -0.40 -0.90 16 24 C -0.16 -1.33 10.14 -41.44 -0.42 -1.75 16 25 C -0.23 -1.83 10.93 29.25 0.32 -1.51 16 26 S 0.24 2.35 22.42 -107.50 -2.41 -0.06 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.05 1.16 8.03 -51.93 -0.42 0.74 16 29 H 0.05 0.96 7.80 -51.93 -0.41 0.56 16 30 H 0.11 2.27 6.39 -51.93 -0.33 1.94 16 31 H 0.10 2.20 8.14 -51.93 -0.42 1.77 16 32 H 0.40 3.76 9.10 45.56 0.41 4.17 16 33 H 0.12 2.98 6.24 -51.93 -0.32 2.66 16 34 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 35 H 0.40 7.12 7.44 -40.82 -0.30 6.82 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.15 1.50 8.02 -52.48 -0.42 1.08 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.17 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -32.69 361.72 -7.97 -40.66 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -3.86 Total: 11.75 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: -1.21 Total: 17.63 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.25 Total: -52.11 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.68 Total: -39.83 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.41 Total: -0.06 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.69 -7.97 -40.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.495 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds