Wall clock time and date at job start Sat Apr 11 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31393 * 1 3 3 Si 1.86807 * 119.99807 * 2 1 4 4 H 1.48502 * 109.46806 * 269.99710 * 3 2 1 5 5 H 1.48497 * 109.46995 * 29.99713 * 3 2 1 6 6 H 1.48504 * 109.47181 * 149.99857 * 3 2 1 7 7 C 1.39014 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99937 * 186.91265 * 7 2 1 9 9 N 1.36886 * 119.99693 * 6.91508 * 7 2 1 10 10 C 1.46504 * 120.00068 * 223.71111 * 9 7 2 11 11 C 1.53006 * 109.46809 * 81.88678 * 10 9 7 12 12 C 1.50698 * 109.46865 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99995 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99820 * 180.02562 * 12 11 10 15 15 C 1.34780 * 120.00081 * 43.71584 * 9 7 2 16 16 O 1.21727 * 119.99824 * 4.17507 * 15 9 7 17 17 C 1.46563 * 119.99965 * 184.17699 * 15 9 7 18 18 C 1.36782 * 126.17747 * 27.19112 * 17 15 9 19 19 N 1.30947 * 113.91528 * 179.78746 * 18 17 15 20 20 C 1.29372 * 117.46749 * 0.52131 * 19 18 17 21 21 C 1.50698 * 124.70191 * 179.72472 * 20 19 18 22 22 H 1.08994 * 109.87522 * 164.27778 * 21 20 19 23 23 C 1.54099 * 109.88135 * 285.28874 * 21 20 19 24 24 C 1.54811 * 104.18771 * 121.45160 * 23 21 20 25 25 C 1.54992 * 102.09354 * 20.88163 * 24 23 21 26 26 O 1.43747 * 109.87701 * 43.27364 * 21 20 19 27 27 S 1.70918 * 110.59891 * 359.71149 * 20 19 18 28 28 H 0.96998 * 120.00285 * 4.97713 * 1 2 3 29 29 H 1.08996 * 109.46965 * 321.88989 * 10 9 7 30 30 H 1.08999 * 109.47246 * 201.88683 * 10 9 7 31 31 H 1.09005 * 109.46543 * 300.00144 * 11 10 9 32 32 H 1.08992 * 109.47146 * 59.99875 * 11 10 9 33 33 H 0.96699 * 116.99822 * 179.97438 * 14 12 11 34 34 H 1.07998 * 123.04195 * 359.96558 * 18 17 15 35 35 H 1.09001 * 110.48774 * 240.12842 * 23 21 20 36 36 H 1.09004 * 110.48833 * 2.77565 * 23 21 20 37 37 H 1.09005 * 110.90904 * 139.07872 * 24 23 21 38 38 H 1.08998 * 110.90693 * 262.64754 * 24 23 21 39 39 H 1.09001 * 110.61633 * 81.47912 * 25 24 23 40 40 H 1.09004 * 110.62029 * 204.47653 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0464 -1.4001 5 1 1.4453 2.6527 0.7000 6 1 3.5455 1.4403 0.7001 7 6 2.0091 -1.2039 0.0005 8 1 3.0832 -1.2071 0.1131 9 7 1.3321 -2.3851 -0.1417 10 6 1.6698 -3.5298 0.7080 11 6 0.9715 -3.3837 2.0616 12 6 1.3194 -4.5609 2.9358 13 8 2.0503 -5.4279 2.5189 14 8 0.8163 -4.6466 4.1774 15 6 0.3550 -2.4951 -1.0634 16 8 0.1256 -1.5700 -1.8206 17 6 -0.4313 -3.7286 -1.1541 18 6 -0.6790 -4.6051 -0.1337 19 7 -1.4160 -5.6301 -0.4814 20 6 -1.8023 -5.6964 -1.7143 21 6 -2.6471 -6.8034 -2.2903 22 1 -3.0601 -6.4933 -3.2501 23 6 -1.7934 -8.0732 -2.4730 24 6 -2.5172 -9.1431 -1.6197 25 6 -3.9442 -8.5506 -1.4982 26 8 -3.7127 -7.1283 -1.3819 27 16 -1.2221 -4.3542 -2.5993 28 1 -0.4850 0.8368 -0.0729 29 1 2.7489 -3.5652 0.8578 30 1 1.3394 -4.4500 0.2262 31 1 1.3020 -2.4634 2.5434 32 1 -0.1075 -3.3482 1.9118 33 1 1.0675 -5.4202 4.7003 34 1 -0.3033 -4.4630 0.8688 35 1 -1.7725 -8.3714 -3.5212 36 1 -0.7817 -7.9095 -2.1017 37 1 -2.5373 -10.1034 -2.1350 38 1 -2.0507 -9.2395 -0.6393 39 1 -4.5284 -8.7706 -2.3918 40 1 -4.4440 -8.9326 -0.6080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:26 Heat of formation + Delta-G solvation = -93.429885 kcal Electronic energy + Delta-G solvation = -27732.514469 eV Core-core repulsion = 23640.754374 eV Total energy + Delta-G solvation = -4091.760095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26818 -39.82977 -39.01060 -37.82057 -36.00022 -34.69298 -32.68053 -32.23707 -31.05189 -30.31967 -28.63765 -25.47080 -25.00505 -23.90788 -22.72737 -21.57667 -21.08815 -20.42324 -19.36214 -18.00276 -17.67592 -16.95172 -16.53642 -16.34391 -16.03136 -15.65924 -15.30385 -15.03843 -14.75682 -14.44311 -13.92543 -13.85802 -13.73036 -13.45617 -13.25177 -12.84050 -12.53454 -12.24195 -11.86981 -11.80659 -11.63387 -11.41003 -11.35745 -11.28006 -11.02683 -10.99635 -10.90273 -10.77724 -10.60056 -10.38264 -10.23765 -9.91768 -9.38633 -9.02501 -8.92086 -8.44894 -8.24311 -7.38852 -6.23949 -4.09350 0.81589 1.62775 2.15542 2.44085 3.03278 3.21994 3.24854 3.29988 3.31581 3.89736 4.14743 4.19154 4.45482 4.54349 4.70292 4.78199 4.85843 4.96195 5.09220 5.13244 5.32715 5.40418 5.41381 5.51412 5.55825 5.60992 5.68334 5.78855 5.84077 5.88918 5.96150 5.99219 6.26123 6.49028 6.52171 6.70062 6.73572 7.42906 8.02695 8.10206 8.12064 8.80071 8.92267 9.37131 10.04759 10.78295 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.004063 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.535928 B = 6889.413508 C = 8584.465337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.056 3.944 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.088 0.912 9 N -0.435 5.435 10 C 0.106 3.894 11 C -0.137 4.137 12 C 0.481 3.519 13 O -0.519 6.519 14 O -0.518 6.518 15 C 0.534 3.466 16 O -0.513 6.513 17 C -0.221 4.221 18 C 0.020 3.980 19 N -0.444 5.444 20 C -0.008 4.008 21 C 0.164 3.836 22 H 0.087 0.913 23 C -0.143 4.143 24 C -0.150 4.150 25 C 0.045 3.955 26 O -0.354 6.354 27 S 0.197 5.803 28 H 0.269 0.731 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.404 0.596 34 H 0.186 0.814 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 -15.040 -0.375 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.155 4.155 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.106 0.894 9 N -0.156 5.156 10 C -0.019 4.019 11 C -0.176 4.176 12 C 0.324 3.676 13 O -0.407 6.407 14 O -0.330 6.330 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.346 4.346 18 C -0.135 4.135 19 N -0.158 5.158 20 C -0.283 4.283 21 C 0.102 3.898 22 H 0.104 0.896 23 C -0.182 4.182 24 C -0.188 4.188 25 C -0.032 4.032 26 O -0.272 6.272 27 S 0.453 5.547 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.127 0.873 33 H 0.262 0.738 34 H 0.202 0.798 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.305 -14.261 -1.657 14.989 hybrid contribution 0.819 0.339 1.374 1.635 sum -3.486 -13.922 -0.283 14.354 Atomic orbital electron populations 1.69859 1.06353 1.28131 1.40621 1.25392 0.95136 0.99639 0.95374 0.86082 0.79219 0.81720 0.78491 1.20253 1.20984 1.19517 1.19216 0.91374 0.82206 1.53163 0.89411 1.43045 1.33412 1.10594 1.28549 1.21652 1.00152 0.91501 0.88565 1.22089 1.04206 0.95609 0.95663 1.23798 0.76316 0.87338 0.80140 1.90696 1.35272 1.41052 1.73704 1.84602 1.70292 1.50276 1.27796 1.16469 0.83802 0.84303 0.83415 1.90684 1.67630 1.38642 1.42063 1.26811 1.07562 1.03884 0.96356 1.23119 0.99094 0.90033 1.01302 1.65863 1.10916 1.23608 1.15413 1.26916 1.05925 1.01380 0.94123 1.21031 0.86036 0.91080 0.91610 0.89580 1.22981 1.00787 0.93439 1.01017 1.23099 0.95897 0.98460 1.01366 1.23609 0.96455 0.81230 1.01885 1.89063 1.52210 1.23272 1.62690 1.83665 1.44215 1.14423 1.12385 0.92048 0.90478 0.90321 0.85930 0.87339 0.73841 0.79778 0.89997 0.89783 0.90185 0.90088 0.92102 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.96 10.98 55.50 0.61 -22.36 16 2 C 0.06 1.49 4.74 -17.45 -0.08 1.40 16 3 Si 0.92 20.50 29.56 -169.99 -5.03 15.47 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.33 -8.52 9.20 -15.01 -0.14 -8.66 16 8 H 0.09 2.14 7.84 -52.49 -0.41 1.73 16 9 N -0.43 -10.46 2.55 -116.33 -0.30 -10.76 16 10 C 0.11 2.08 4.14 -4.04 -0.02 2.07 16 11 C -0.14 -2.39 5.09 -27.88 -0.14 -2.53 16 12 C 0.48 7.55 8.15 36.00 0.29 7.84 16 13 O -0.52 -9.18 16.74 -18.75 -0.31 -9.49 16 14 O -0.52 -6.59 13.42 -39.26 -0.53 -7.12 16 15 C 0.53 13.59 6.75 -12.90 -0.09 13.50 16 16 O -0.51 -14.99 14.57 5.16 0.08 -14.92 16 17 C -0.22 -4.77 5.95 -36.75 -0.22 -4.99 16 18 C 0.02 0.39 9.01 -18.46 -0.17 0.23 16 19 N -0.44 -8.43 10.47 -11.25 -0.12 -8.55 16 20 C -0.01 -0.14 6.07 -13.32 -0.08 -0.22 16 21 C 0.16 2.18 3.93 -27.31 -0.11 2.07 16 22 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 23 C -0.14 -1.50 6.63 -25.20 -0.17 -1.67 16 24 C -0.15 -1.37 7.16 -24.73 -0.18 -1.55 16 25 C 0.05 0.44 7.72 38.21 0.29 0.74 16 26 O -0.35 -5.12 11.17 -35.23 -0.39 -5.52 16 27 S 0.20 3.52 23.12 -107.50 -2.49 1.04 16 28 H 0.27 7.31 8.32 -40.82 -0.34 6.97 16 29 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 30 H 0.08 1.52 4.98 -51.93 -0.26 1.26 16 31 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 32 H 0.11 1.96 6.26 -51.93 -0.32 1.64 16 33 H 0.40 3.19 9.10 45.56 0.41 3.60 16 34 H 0.19 3.52 2.95 -52.49 -0.15 3.36 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -34.57 350.63 -7.63 -42.21 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.65 Total: 6.48 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.80 Total: 8.22 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.20 Total: -41.66 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.16 Total: -37.05 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.49 Total: 1.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.57 -7.63 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.224 kcal (2) G-P(sol) polarization free energy of solvation -34.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds