Wall clock time and date at job start Sat Apr 11 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31392 * 1 3 3 Si 1.86803 * 120.00256 * 2 1 4 4 H 1.48506 * 109.46870 * 270.00212 * 3 2 1 5 5 H 1.48498 * 109.46933 * 29.99808 * 3 2 1 6 6 H 1.48496 * 109.47361 * 150.00243 * 3 2 1 7 7 C 1.39009 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99941 * 186.83862 * 7 2 1 9 9 N 1.36892 * 120.00170 * 6.83533 * 7 2 1 10 10 C 1.46495 * 120.00455 * 223.50980 * 9 7 2 11 11 C 1.53009 * 109.47025 * 81.94237 * 10 9 7 12 12 C 1.50694 * 109.47158 * 180.02562 * 11 10 9 13 13 O 1.20828 * 120.00032 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00347 * 179.72588 * 12 11 10 15 15 C 1.34776 * 119.99782 * 43.51111 * 9 7 2 16 16 O 1.21735 * 120.00072 * 4.31837 * 15 9 7 17 17 C 1.46559 * 120.00050 * 184.32213 * 15 9 7 18 18 C 1.36774 * 126.17945 * 26.39049 * 17 15 9 19 19 N 1.30952 * 113.92069 * 179.97438 * 18 17 15 20 20 C 1.29372 * 117.46564 * 359.97438 * 19 18 17 21 21 C 1.50705 * 124.70186 * 180.02562 * 20 19 18 22 22 H 1.08997 * 110.33003 * 197.22583 * 21 20 19 23 23 C 1.54475 * 110.37283 * 74.97609 * 21 20 19 24 24 C 1.54504 * 104.06020 * 217.19571 * 23 21 20 25 25 C 1.54472 * 104.06834 * 359.97438 * 24 23 21 26 26 O 1.44428 * 104.80248 * 23.98482 * 25 24 23 27 27 S 1.70927 * 110.59729 * 359.75992 * 20 19 18 28 28 H 0.97002 * 119.99617 * 4.96810 * 1 2 3 29 29 H 1.09000 * 109.47359 * 321.94791 * 10 9 7 30 30 H 1.08993 * 109.47181 * 201.94273 * 10 9 7 31 31 H 1.09000 * 109.46600 * 60.00089 * 11 10 9 32 32 H 1.08993 * 109.47170 * 300.00043 * 11 10 9 33 33 H 0.96700 * 117.00136 * 180.27399 * 14 12 11 34 34 H 1.08000 * 123.03946 * 359.97438 * 18 17 15 35 35 H 1.09007 * 110.51018 * 335.83222 * 23 21 20 36 36 H 1.08990 * 110.51355 * 98.40744 * 23 21 20 37 37 H 1.09002 * 110.51841 * 118.64447 * 24 23 21 38 38 H 1.09005 * 110.51067 * 241.21393 * 24 23 21 39 39 H 1.08996 * 110.37695 * 142.81411 * 25 24 23 40 40 H 1.09000 * 110.37535 * 265.04648 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4002 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0090 -1.2039 -0.0005 8 1 3.0832 -1.2072 0.1108 9 7 1.3318 -2.3851 -0.1422 10 6 1.6734 -3.5313 0.7038 11 6 0.9797 -3.3889 2.0601 12 6 1.3315 -4.5676 2.9306 13 8 2.0626 -5.4326 2.5096 14 8 0.8377 -4.6536 4.1757 15 6 0.3508 -2.4936 -1.0600 16 8 0.1196 -1.5680 -1.8161 17 6 -0.4376 -3.7260 -1.1476 18 6 -0.6696 -4.6101 -0.1302 19 7 -1.4094 -5.6342 -0.4751 20 6 -1.8216 -5.6869 -1.7002 21 6 -2.6790 -6.7873 -2.2704 22 1 -2.6392 -6.7726 -3.3596 23 6 -4.1376 -6.6395 -1.7836 24 6 -4.6106 -8.0944 -1.5679 25 6 -3.3821 -8.9492 -1.9505 26 8 -2.2501 -8.0712 -1.7674 27 16 -1.2648 -4.3318 -2.5808 28 1 -0.4850 0.8369 -0.0728 29 1 2.7530 -3.5662 0.8499 30 1 1.3422 -4.4507 0.2211 31 1 -0.0999 -3.3540 1.9140 32 1 1.3109 -2.4695 2.5428 33 1 1.0948 -5.4260 4.6976 34 1 -0.2782 -4.4759 0.8673 35 1 -4.1730 -6.0836 -0.8466 36 1 -4.7454 -6.1465 -2.5422 37 1 -4.8799 -8.2579 -0.5244 38 1 -5.4544 -8.3223 -2.2192 39 1 -3.3017 -9.8142 -1.2922 40 1 -3.4516 -9.2696 -2.9901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:28 Heat of formation + Delta-G solvation = -92.639648 kcal Electronic energy + Delta-G solvation = -27657.899679 eV Core-core repulsion = 23566.173851 eV Total energy + Delta-G solvation = -4091.725828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26111 -39.81014 -39.03212 -37.84260 -35.98752 -34.69394 -32.68774 -32.22133 -31.07282 -30.32126 -28.61522 -25.51423 -25.02956 -23.93100 -22.78646 -21.44648 -21.08962 -20.42959 -19.37529 -17.99377 -17.68904 -16.95195 -16.52257 -16.25189 -16.03076 -15.67120 -15.40685 -15.09001 -14.68372 -14.40520 -14.02546 -13.86552 -13.79818 -13.51239 -13.12665 -12.88350 -12.48767 -12.17809 -11.91326 -11.76472 -11.69260 -11.46360 -11.35089 -11.28493 -11.02409 -10.99373 -10.83409 -10.77433 -10.60610 -10.37335 -10.23480 -9.95593 -9.42464 -9.03568 -8.92057 -8.44673 -8.25606 -7.39294 -6.24900 -4.09699 0.80553 1.59581 2.14551 2.45644 3.02464 3.21914 3.25028 3.29521 3.31554 3.89598 4.14199 4.20023 4.45752 4.56382 4.70636 4.78379 4.85508 4.94222 5.08591 5.11702 5.32806 5.36330 5.41177 5.50184 5.53955 5.63204 5.68083 5.77811 5.81914 5.89281 5.95768 5.99498 6.26644 6.49578 6.51397 6.67767 6.71371 7.42232 8.02059 8.10754 8.11893 8.79365 8.91614 9.36527 10.04300 10.77194 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.004002 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.220313 B = 6995.206514 C = 8709.298970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.056 3.944 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.330 4.330 8 H 0.089 0.911 9 N -0.434 5.434 10 C 0.105 3.895 11 C -0.137 4.137 12 C 0.481 3.519 13 O -0.517 6.517 14 O -0.519 6.519 15 C 0.533 3.467 16 O -0.514 6.514 17 C -0.220 4.220 18 C 0.019 3.981 19 N -0.443 5.443 20 C -0.006 4.006 21 C 0.162 3.838 22 H 0.087 0.913 23 C -0.143 4.143 24 C -0.152 4.152 25 C 0.042 3.958 26 O -0.350 6.350 27 S 0.200 5.800 28 H 0.269 0.731 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.404 0.596 34 H 0.187 0.813 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 -12.845 0.068 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.156 4.156 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.106 0.894 9 N -0.156 5.156 10 C -0.020 4.020 11 C -0.175 4.175 12 C 0.323 3.677 13 O -0.405 6.405 14 O -0.330 6.330 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.345 4.345 18 C -0.136 4.136 19 N -0.157 5.157 20 C -0.281 4.281 21 C 0.100 3.900 22 H 0.105 0.895 23 C -0.182 4.182 24 C -0.190 4.190 25 C -0.035 4.035 26 O -0.269 6.269 27 S 0.456 5.544 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.262 0.738 34 H 0.203 0.797 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.254 -12.274 -1.257 14.313 hybrid contribution 0.571 0.444 1.393 1.570 sum -6.683 -11.830 0.137 13.588 Atomic orbital electron populations 1.69864 1.06357 1.28093 1.40643 1.25385 0.95149 0.99635 0.95414 0.86075 0.79232 0.81676 0.78499 1.20250 1.20987 1.19505 1.19233 0.91403 0.82221 1.52937 0.89386 1.43041 1.33191 1.10521 1.28799 1.21673 1.00240 0.91498 0.88588 1.22077 1.04161 0.95565 0.95712 1.23788 0.76416 0.87329 0.80162 1.90707 1.35095 1.41105 1.73632 1.84594 1.70492 1.50405 1.27538 1.16466 0.83849 0.84312 0.83429 1.90685 1.67857 1.38578 1.41969 1.26829 1.06795 1.04170 0.96744 1.23143 0.99351 0.89782 1.01355 1.65871 1.10928 1.23293 1.15565 1.26656 1.06058 1.01409 0.93965 1.21238 0.90906 0.81417 0.96398 0.89535 1.22984 0.94340 0.97647 1.03269 1.22917 0.98549 0.94549 1.02937 1.23424 0.85224 0.94031 1.00806 1.89292 1.35101 1.18785 1.83679 1.83658 1.43080 1.14670 1.12987 0.92078 0.90429 0.90207 0.87378 0.85927 0.73820 0.79685 0.89794 0.89950 0.90437 0.90439 0.88916 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.76 10.96 55.50 0.61 -22.15 16 2 C 0.06 1.46 4.75 -17.45 -0.08 1.38 16 3 Si 0.92 20.43 29.56 -169.99 -5.03 15.40 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.33 -8.47 9.21 -15.01 -0.14 -8.61 16 8 H 0.09 2.15 7.84 -52.49 -0.41 1.74 16 9 N -0.43 -10.48 2.55 -116.33 -0.30 -10.78 16 10 C 0.10 2.08 4.14 -4.04 -0.02 2.06 16 11 C -0.14 -2.39 5.09 -27.88 -0.14 -2.53 16 12 C 0.48 7.62 8.13 36.00 0.29 7.91 16 13 O -0.52 -9.36 16.74 -18.75 -0.31 -9.67 16 14 O -0.52 -6.64 13.42 -39.26 -0.53 -7.16 16 15 C 0.53 13.54 6.75 -12.91 -0.09 13.45 16 16 O -0.51 -14.92 14.55 5.16 0.08 -14.85 16 17 C -0.22 -4.75 5.97 -36.76 -0.22 -4.97 16 18 C 0.02 0.38 8.99 -18.46 -0.17 0.21 16 19 N -0.44 -8.46 10.46 -11.25 -0.12 -8.58 16 20 C -0.01 -0.10 6.23 -13.31 -0.08 -0.18 16 21 C 0.16 2.16 3.80 -27.11 -0.10 2.05 16 22 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 23 C -0.14 -1.56 6.62 -25.17 -0.17 -1.73 16 24 C -0.15 -1.32 7.09 -25.17 -0.18 -1.50 16 25 C 0.04 0.41 7.63 37.93 0.29 0.70 16 26 O -0.35 -5.06 11.30 -35.23 -0.40 -5.46 16 27 S 0.20 3.56 23.11 -107.50 -2.48 1.08 16 28 H 0.27 7.23 8.32 -40.82 -0.34 6.89 16 29 H 0.08 1.49 8.06 -51.93 -0.42 1.07 16 30 H 0.08 1.58 4.96 -51.93 -0.26 1.32 16 31 H 0.11 1.94 6.28 -51.93 -0.33 1.61 16 32 H 0.12 2.16 8.14 -51.93 -0.42 1.74 16 33 H 0.40 3.25 9.10 45.56 0.41 3.66 16 34 H 0.19 3.54 2.90 -52.49 -0.15 3.39 16 35 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -34.45 350.68 -7.65 -42.10 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.65 Total: 6.53 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -0.80 Total: 8.26 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.19 Total: -41.51 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.16 Total: -37.15 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -2.48 Total: 1.08 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.45 -7.65 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.536 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds