Wall clock time and date at job start Sat Apr 11 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99864 * 2 1 4 4 H 1.48502 * 109.47367 * 269.99918 * 3 2 1 5 5 H 1.48503 * 109.47381 * 30.00403 * 3 2 1 6 6 H 1.48504 * 109.47113 * 150.00391 * 3 2 1 7 7 C 1.38810 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00639 * 169.59583 * 7 2 1 9 9 N 1.36934 * 119.99680 * 349.87500 * 7 2 1 10 10 C 1.46965 * 120.59635 * 147.76231 * 9 7 2 11 11 C 1.53815 * 108.40054 * 124.75535 * 10 9 7 12 12 N 1.46968 * 108.57665 * 49.64104 * 11 10 9 13 13 S 1.65597 * 120.59388 * 124.62604 * 12 11 10 14 14 O 1.42100 * 106.39998 * 29.86498 * 13 12 11 15 15 O 1.42103 * 106.40274 * 162.78285 * 13 12 11 16 16 C 1.76201 * 107.21788 * 276.32407 * 13 12 11 17 17 C 1.37958 * 120.07507 * 347.22233 * 16 13 12 18 18 C 1.38348 * 120.15081 * 179.72078 * 17 16 13 19 19 C 1.38389 * 120.29974 * 0.55826 * 18 17 16 20 20 C 1.37923 * 120.15038 * 359.72164 * 19 18 17 21 21 C 1.39611 * 120.07296 * 167.50009 * 16 13 12 22 22 C 1.47715 * 120.15196 * 0.02562 * 21 16 13 23 23 O 1.21477 * 120.00124 * 6.38692 * 22 21 16 24 24 O 1.34713 * 120.00066 * 186.39395 * 22 21 16 25 25 C 1.46965 * 118.80977 * 304.64591 * 12 11 10 26 26 C 1.46968 * 120.59460 * 328.03841 * 9 7 2 27 27 H 0.96998 * 120.00460 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.61407 * 244.53895 * 10 9 7 29 29 H 1.09005 * 109.60896 * 5.05039 * 10 9 7 30 30 H 1.08997 * 109.73929 * 289.85355 * 11 10 9 31 31 H 1.08998 * 109.67283 * 169.38774 * 11 10 9 32 32 H 1.08003 * 119.92958 * 359.97438 * 17 16 13 33 33 H 1.07994 * 119.85502 * 180.27786 * 18 17 16 34 34 H 1.08002 * 119.92647 * 179.74649 * 19 18 17 35 35 H 1.08006 * 120.07847 * 180.02562 * 20 19 18 36 36 H 0.96696 * 117.00152 * 179.97438 * 24 22 21 37 37 H 1.09004 * 109.61058 * 295.47978 * 25 12 11 38 38 H 1.09004 * 109.74740 * 175.05901 * 25 12 11 39 39 H 1.08995 * 109.60758 * 354.95190 * 26 9 7 40 40 H 1.09010 * 109.60702 * 115.29006 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0769 -1.2097 -0.1694 9 7 1.3416 -2.3788 0.2074 10 6 1.7930 -3.6198 -0.4376 11 6 2.0231 -4.6786 0.6542 12 7 0.8375 -4.7220 1.5215 13 16 0.0282 -6.1448 1.7722 14 8 0.9948 -7.1807 1.6634 15 8 -0.7764 -5.9508 2.9273 16 6 -1.0833 -6.3576 0.4216 17 6 -1.3384 -5.3074 -0.4359 18 6 -2.2064 -5.4744 -1.5002 19 6 -2.8332 -6.6909 -1.7057 20 6 -2.5916 -7.7475 -0.8528 21 6 -1.7122 -7.5877 0.2202 22 6 -1.4490 -8.7146 1.1382 23 8 -0.7769 -8.5417 2.1352 24 8 -1.9541 -9.9343 0.8696 25 6 0.3827 -3.4799 2.1621 26 6 0.1560 -2.4223 1.0749 27 1 -0.4851 0.8400 0.0004 28 1 1.0306 -3.9685 -1.1341 29 1 2.7245 -3.4359 -0.9730 30 1 2.8994 -4.4132 1.2455 31 1 2.1748 -5.6544 0.1929 32 1 -0.8563 -4.3538 -0.2784 33 1 -2.3992 -4.6504 -2.1710 34 1 -3.5128 -6.8134 -2.5361 35 1 -3.0811 -8.6966 -1.0145 36 1 -1.7546 -10.6405 1.4993 37 1 1.1423 -3.1293 2.8609 38 1 -0.5500 -3.6612 2.6964 39 1 0.0061 -1.4473 1.5385 40 1 -0.7210 -2.6846 0.4829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:32 Heat of formation + Delta-G solvation = -89.387309 kcal Electronic energy + Delta-G solvation = -28872.831695 eV Core-core repulsion = 24781.246899 eV Total energy + Delta-G solvation = -4091.584796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74918 -38.88809 -37.67749 -36.77809 -36.47921 -35.30309 -33.85987 -31.76976 -31.49422 -31.12534 -30.20975 -26.45323 -25.13645 -23.37278 -23.25407 -22.90120 -21.81547 -20.01605 -18.69739 -18.49590 -18.15053 -17.23211 -16.91867 -16.19037 -15.98656 -15.51253 -15.26388 -15.18250 -14.81936 -14.58334 -14.02556 -13.74553 -13.68904 -13.50596 -13.35554 -13.08027 -13.02687 -12.58877 -12.07970 -12.06128 -11.85415 -11.65437 -11.60466 -11.32701 -11.07014 -10.97069 -10.85505 -10.76299 -10.56744 -10.45853 -10.27235 -10.04880 -9.75230 -9.60617 -9.32547 -8.79114 -8.54657 -6.70363 -5.89112 -3.39179 0.18732 0.70431 0.86006 2.25619 2.61181 3.26497 3.31639 3.35633 3.39325 3.41078 4.03541 4.39651 4.43417 4.66883 4.68740 4.94820 5.02653 5.12691 5.22386 5.30050 5.31235 5.46107 5.59853 5.73806 5.74675 5.89587 5.92295 6.00302 6.08581 6.15616 6.26635 6.33086 6.41226 6.50942 6.60235 6.75292 6.89385 7.20382 7.51767 7.53117 7.69753 8.35394 9.09569 9.69964 10.27907 11.18100 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020550 B = 0.003898 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.211658 B = 7180.543174 C = 7898.099011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.128 3.872 11 C 0.102 3.898 12 N -0.993 5.993 13 S 2.701 3.299 14 O -0.946 6.946 15 O -0.951 6.951 16 C -0.616 4.616 17 C -0.039 4.039 18 C -0.095 4.095 19 C -0.090 4.090 20 C -0.080 4.080 21 C -0.044 4.044 22 C 0.514 3.486 23 O -0.488 6.488 24 O -0.503 6.503 25 C 0.087 3.913 26 C 0.154 3.846 27 H 0.256 0.744 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.420 0.580 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 -14.939 -2.980 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.192 4.192 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.000 4.000 11 C -0.025 4.025 12 N -0.834 5.834 13 S 2.787 3.213 14 O -0.936 6.936 15 O -0.941 6.941 16 C -0.699 4.699 17 C -0.058 4.058 18 C -0.113 4.113 19 C -0.108 4.108 20 C -0.098 4.098 21 C -0.046 4.046 22 C 0.357 3.643 23 O -0.377 6.377 24 O -0.315 6.315 25 C -0.039 4.039 26 C 0.027 3.973 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.178 0.822 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.279 0.721 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.123 0.877 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.874 -15.006 -2.314 16.280 hybrid contribution 0.073 0.583 -0.400 0.711 sum -5.801 -14.423 -2.714 15.781 Atomic orbital electron populations 1.69916 1.05291 1.25745 1.54006 1.25166 0.95426 0.98467 1.00150 0.86245 0.79129 0.83341 0.77700 1.21372 1.21552 1.20401 1.19185 0.90886 0.83639 1.44712 0.91611 1.43876 1.31975 1.03837 1.51391 1.21461 0.98628 0.87584 0.92327 1.22155 0.86989 1.00147 0.93208 1.57683 1.39553 1.24911 1.61238 1.02165 0.73519 0.72098 0.73551 1.93544 1.59674 1.54216 1.86194 1.93536 1.70279 1.85720 1.44612 1.31568 1.18033 0.98556 1.21703 1.21479 0.94490 0.98012 0.91787 1.21697 0.94707 0.97861 0.97061 1.21457 0.98126 0.92672 0.98534 1.21520 0.95786 0.99911 0.92632 1.18434 0.99922 0.89891 0.96365 1.20994 0.76129 0.82997 0.84195 1.90952 1.35515 1.83603 1.27607 1.84477 1.71699 1.19667 1.55680 1.22457 0.99686 0.84473 0.97262 1.21289 0.88397 0.97725 0.89882 0.93427 0.95944 0.91291 0.90834 0.90592 0.82171 0.83997 0.84305 0.83693 0.72081 0.91087 0.90011 0.87741 0.95928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.26 11.03 55.49 0.61 -23.65 16 2 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 3 Si 0.91 20.55 29.57 -169.99 -5.03 15.52 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.25 -6.45 9.57 -15.06 -0.14 -6.59 16 8 H 0.07 1.64 7.85 -52.49 -0.41 1.23 16 9 N -0.59 -13.38 2.95 -171.76 -0.51 -13.89 16 10 C 0.13 2.41 6.38 -3.36 -0.02 2.39 16 11 C 0.10 1.75 6.54 -3.36 -0.02 1.73 16 12 N -0.99 -17.98 2.26 -113.00 -0.26 -18.23 16 13 S 2.70 50.86 3.99 -107.50 -0.43 50.43 16 14 O -0.95 -19.37 14.52 -67.04 -0.97 -20.35 16 15 O -0.95 -20.08 15.98 -64.48 -1.03 -21.11 16 16 C -0.62 -10.04 5.86 -39.17 -0.23 -10.27 16 17 C -0.04 -0.59 9.43 -39.64 -0.37 -0.96 16 18 C -0.09 -1.12 10.04 -39.49 -0.40 -1.52 16 19 C -0.09 -0.89 10.03 -39.64 -0.40 -1.28 16 20 C -0.08 -0.87 9.62 -39.17 -0.38 -1.25 16 21 C -0.04 -0.64 5.87 -104.99 -0.62 -1.26 16 22 C 0.51 7.53 8.11 34.60 0.28 7.81 16 23 O -0.49 -8.96 12.64 -29.58 -0.37 -9.33 16 24 O -0.50 -4.87 12.70 -40.53 -0.51 -5.38 16 25 C 0.09 1.65 6.55 -3.60 -0.02 1.63 16 26 C 0.15 3.34 4.95 -3.60 -0.02 3.32 16 27 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.02 0.41 7.07 -51.93 -0.37 0.04 16 29 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.16 7.27 -51.93 -0.38 0.79 16 32 H 0.16 2.59 3.53 -52.48 -0.19 2.41 16 33 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.15 1.17 7.63 -52.48 -0.40 0.77 16 36 H 0.42 2.07 9.11 45.56 0.42 2.48 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.08 1.46 6.93 -51.93 -0.36 1.10 16 39 H 0.10 2.54 6.04 -51.93 -0.31 2.23 16 40 H 0.02 0.49 6.35 -51.92 -0.33 0.16 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -34.37 335.40 -9.44 -43.81 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.57 Total: 3.29 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.43 Total: -6.17 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.15 Total: -55.77 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -2.89 Total: -56.17 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 16 Polarization: 50.86 SS G_CDS: -0.43 Total: 50.43 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.37 -9.44 -43.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.576 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds