Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00256 * 2 1 4 4 H 1.48496 * 109.47324 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47131 * 300.00184 * 3 2 1 6 6 H 1.48494 * 109.46844 * 60.00122 * 3 2 1 7 7 C 1.37884 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99685 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00079 * 0.02562 * 7 2 1 10 10 H 1.09006 * 110.54378 * 57.38340 * 9 7 2 11 11 C 1.54894 * 110.48713 * 294.77721 * 9 7 2 12 12 C 1.54889 * 102.74896 * 203.38274 * 11 9 7 13 13 C 1.54261 * 104.19917 * 37.93944 * 12 11 9 14 14 H 1.09004 * 110.07351 * 217.08896 * 13 12 11 15 15 N 1.46499 * 110.03324 * 95.67557 * 13 12 11 16 16 S 1.65597 * 119.99926 * 98.11203 * 15 13 12 17 17 O 1.42096 * 106.40195 * 178.26439 * 16 15 13 18 18 O 1.42108 * 106.40105 * 311.18495 * 16 15 13 19 19 C 1.76199 * 107.22117 * 64.72196 * 16 15 13 20 20 C 1.38362 * 120.34571 * 269.72709 * 19 16 15 21 21 N 1.31934 * 121.09000 * 179.72790 * 20 19 16 22 22 C 1.31689 * 121.88330 * 0.57681 * 21 20 19 23 23 C 1.39572 * 120.55817 * 359.68897 * 22 21 20 24 24 C 1.47727 * 120.55980 * 180.02562 * 23 22 21 25 25 O 1.21473 * 119.99679 * 179.97438 * 24 23 22 26 26 O 1.34705 * 120.00352 * 359.97396 * 24 23 22 27 27 C 1.38346 * 120.34836 * 89.99918 * 19 16 15 28 28 C 1.53880 * 106.59713 * 336.39080 * 13 12 11 29 29 H 0.96998 * 119.99594 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.75337 * 321.69406 * 11 9 7 31 31 H 1.08992 * 110.76033 * 85.06100 * 11 9 7 32 32 H 1.09002 * 110.48227 * 279.26106 * 12 11 9 33 33 H 1.08997 * 110.48994 * 156.61915 * 12 11 9 34 34 H 0.97001 * 119.99790 * 277.82991 * 15 13 12 35 35 H 1.07997 * 119.45559 * 359.97438 * 20 19 16 36 36 H 1.08005 * 119.71758 * 179.70419 * 22 21 20 37 37 H 0.96704 * 117.00277 * 180.02562 * 26 24 23 38 38 H 1.08001 * 120.85094 * 359.95853 * 27 19 16 39 39 H 1.08996 * 110.02924 * 119.28820 * 28 13 12 40 40 H 1.09002 * 110.03438 * 240.71698 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5836 -2.5547 -0.8618 11 6 0.4528 -2.6654 1.3153 12 6 0.2748 -4.2008 1.4155 13 6 1.6118 -4.7713 0.8990 14 1 1.4335 -5.6795 0.3233 15 7 2.5034 -5.0584 2.0254 16 16 2.6203 -6.6008 2.6166 17 8 3.5814 -6.5580 3.6623 18 8 1.2888 -7.0610 2.8031 19 6 3.3168 -7.5970 1.3410 20 6 2.4976 -8.2370 0.4279 21 7 3.0036 -8.9821 -0.5362 22 6 4.3016 -9.1607 -0.6688 23 6 5.1953 -8.5538 0.2149 24 6 6.6514 -8.7536 0.0658 25 8 7.4201 -8.2201 0.8404 26 8 7.1267 -9.5275 -0.9291 27 6 4.6882 -7.7519 1.2453 28 6 2.2325 -3.6893 -0.0021 29 1 -0.4849 0.8401 0.0004 30 1 1.0234 -2.2866 2.1632 31 1 -0.5145 -2.1681 1.2462 32 1 -0.5502 -4.5311 0.7843 33 1 0.1074 -4.4987 2.4505 34 1 3.0284 -4.3458 2.4223 35 1 1.4265 -8.1216 0.5033 36 1 4.6776 -9.7819 -1.4683 37 1 8.0868 -9.6288 -0.9861 38 1 5.3507 -7.2668 1.9469 39 1 3.1971 -3.3780 0.3987 40 1 2.3546 -4.0722 -1.0153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -135.760635 kcal Electronic energy + Delta-G solvation = -27282.651591 eV Core-core repulsion = 23189.055897 eV Total energy + Delta-G solvation = -4093.595694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23390 -39.89896 -37.99824 -37.26059 -36.62365 -35.96056 -33.64555 -33.30611 -32.40289 -31.71574 -28.22203 -26.86244 -25.92357 -24.65380 -23.88721 -22.37800 -20.07689 -19.87132 -19.34820 -18.71569 -18.33462 -17.66467 -17.17951 -17.02405 -16.63556 -16.28854 -16.20043 -15.62202 -14.78437 -14.57294 -14.44828 -14.27726 -14.01470 -13.82821 -13.35443 -12.98912 -12.67734 -12.41203 -12.21573 -12.11131 -12.10807 -11.97879 -11.69825 -11.52122 -11.19561 -11.05465 -10.84391 -10.79845 -10.53789 -10.34813 -10.14962 -10.11620 -10.03609 -9.65952 -9.33796 -9.14040 -8.83885 -8.39811 -6.05018 -4.07922 -0.22557 0.17725 0.36511 1.93192 2.36104 2.84684 3.10490 3.26953 3.35824 3.38652 3.59892 3.74155 3.99253 4.15422 4.26115 4.32267 4.40701 4.74680 4.89978 5.02928 5.20673 5.25594 5.31207 5.47097 5.54674 5.76667 5.78526 5.92080 6.26656 6.37939 6.57862 6.60026 6.68338 6.89246 7.09457 7.09964 7.22742 7.29534 7.33721 7.67087 7.82079 7.97750 8.38845 8.94797 9.56580 11.04384 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013465 B = 0.003178 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.983847 B = 8809.680686 C = 9703.793068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.033 0.967 11 C -0.101 4.101 12 C -0.142 4.142 13 C 0.147 3.853 14 H 0.069 0.931 15 N -1.097 6.097 16 S 2.697 3.303 17 O -0.958 6.958 18 O -0.945 6.945 19 C -0.743 4.743 20 C 0.234 3.766 21 N -0.497 5.497 22 C 0.209 3.791 23 C -0.205 4.205 24 C 0.536 3.464 25 O -0.502 6.502 26 O -0.510 6.510 27 C 0.093 3.907 28 C -0.123 4.123 29 H 0.259 0.741 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.424 0.576 35 H 0.184 0.816 36 H 0.181 0.819 37 H 0.420 0.580 38 H 0.168 0.832 39 H 0.067 0.933 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -19.250 -0.759 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.139 4.139 12 C -0.181 4.181 13 C 0.041 3.959 14 H 0.087 0.913 15 N -0.860 5.860 16 S 2.781 3.219 17 O -0.947 6.947 18 O -0.935 6.935 19 C -0.828 4.828 20 C 0.076 3.924 21 N -0.206 5.206 22 C 0.052 3.948 23 C -0.209 4.209 24 C 0.379 3.621 25 O -0.391 6.391 26 O -0.323 6.323 27 C 0.066 3.934 28 C -0.162 4.162 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.260 0.740 35 H 0.201 0.799 36 H 0.198 0.802 37 H 0.280 0.720 38 H 0.185 0.815 39 H 0.085 0.915 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.311 -19.807 -0.408 21.117 hybrid contribution 2.249 1.432 -0.067 2.667 sum 9.560 -18.375 -0.475 20.719 Atomic orbital electron populations 1.69959 1.05855 1.26387 1.50379 1.24977 0.94831 0.99026 0.95072 0.86602 0.80138 0.84065 0.77557 1.19875 1.21121 1.21073 1.21197 0.92700 0.90477 1.50933 0.92665 1.19477 0.92411 0.91109 0.94128 0.94846 1.22470 1.01484 0.90346 0.99613 1.22940 0.95053 0.99736 1.00370 1.21638 0.90136 0.98656 0.85468 0.91326 1.55593 1.56792 1.25318 1.48287 1.02064 0.73985 0.72929 0.72881 1.93602 1.62840 1.86367 1.51939 1.93621 1.35136 1.80938 1.83817 1.32379 1.03969 1.22166 1.24326 1.23070 1.00983 0.83910 0.84411 1.68012 1.14060 1.17144 1.21359 1.23635 0.88062 0.89564 0.93582 1.20114 0.91451 1.07114 1.02204 1.20381 0.88624 0.75344 0.77788 1.90953 1.58754 1.46542 1.42822 1.84501 1.32207 1.64935 1.50610 1.21473 0.93411 0.86943 0.91540 1.22662 1.00796 0.95997 0.96763 0.93099 0.93217 0.91294 0.91533 0.92024 0.73979 0.79895 0.80225 0.71991 0.81502 0.91489 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 12.29 55.43 0.68 -23.88 16 2 C 0.06 1.67 5.35 -17.82 -0.10 1.58 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.28 8.46 -34.44 -0.29 -13.58 16 8 H 0.06 1.41 7.54 -52.49 -0.40 1.01 16 9 C 0.05 1.08 2.72 -90.12 -0.25 0.83 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.10 -2.16 5.75 -24.74 -0.14 -2.30 16 12 C -0.14 -2.42 6.54 -25.07 -0.16 -2.59 16 13 C 0.15 2.22 3.45 -66.81 -0.23 1.99 16 14 H 0.07 0.86 7.33 -51.93 -0.38 0.48 16 15 N -1.10 -14.58 5.40 -3.94 -0.02 -14.60 16 16 S 2.70 34.34 5.66 -107.50 -0.61 33.73 16 17 O -0.96 -14.19 17.35 -57.17 -0.99 -15.18 16 18 O -0.95 -13.84 17.06 -57.17 -0.98 -14.81 16 19 C -0.74 -8.28 5.85 -39.50 -0.23 -8.51 16 20 C 0.23 2.47 10.12 -17.46 -0.18 2.29 16 21 N -0.50 -5.19 10.35 -12.89 -0.13 -5.32 16 22 C 0.21 1.84 10.79 -17.12 -0.18 1.66 16 23 C -0.20 -2.00 5.89 -104.84 -0.62 -2.62 16 24 C 0.54 4.97 8.28 34.61 0.29 5.26 16 25 O -0.50 -6.20 17.21 -19.25 -0.33 -6.53 16 26 O -0.51 -2.86 12.71 -40.51 -0.51 -3.38 16 27 C 0.09 1.01 9.18 -38.86 -0.36 0.65 16 28 C -0.12 -2.20 6.13 -25.61 -0.16 -2.35 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.05 1.09 8.05 -51.93 -0.42 0.67 16 31 H 0.07 1.63 7.55 -51.93 -0.39 1.24 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 34 H 0.42 5.35 8.67 -34.47 -0.30 5.05 16 35 H 0.18 1.63 7.61 -52.49 -0.40 1.23 16 36 H 0.18 1.04 7.62 -52.48 -0.40 0.64 16 37 H 0.42 0.55 9.11 45.56 0.42 0.96 16 38 H 0.17 1.77 7.38 -52.49 -0.39 1.39 16 39 H 0.07 1.19 7.26 -51.93 -0.38 0.81 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -33.87 356.29 -9.01 -42.88 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.85 Total: 3.77 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.61 Total: -17.69 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.53 Total: -43.80 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -2.81 Total: -39.90 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 34.34 SS G_CDS: -0.61 Total: 33.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.87 -9.01 -42.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.882 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds