Wall clock time and date at job start Sat Apr 11 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48504 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47067 * 300.00371 * 3 2 1 6 6 H 1.48500 * 109.47338 * 60.00410 * 3 2 1 7 7 C 1.37878 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00332 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99449 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.49792 * 300.05980 * 9 7 2 11 11 C 1.53036 * 109.50077 * 60.16387 * 9 7 2 12 12 C 1.53039 * 109.53733 * 181.31653 * 11 9 7 13 13 C 1.53623 * 109.24063 * 298.50868 * 12 11 9 14 14 N 1.46927 * 108.54460 * 54.85867 * 13 12 11 15 15 S 1.65592 * 120.63206 * 126.37009 * 14 13 12 16 16 O 1.42093 * 106.40516 * 156.18016 * 15 14 13 17 17 O 1.42097 * 106.40426 * 23.25650 * 15 14 13 18 18 C 1.76205 * 107.21912 * 269.71996 * 15 14 13 19 19 C 1.38175 * 119.54878 * 270.28377 * 18 15 14 20 20 C 1.39841 * 118.99325 * 180.22832 * 19 18 15 21 21 C 1.48043 * 120.92807 * 179.77563 * 20 19 18 22 22 O 1.21433 * 120.00091 * 359.71408 * 21 20 19 23 23 O 1.34674 * 119.99873 * 179.43687 * 21 20 19 24 24 C 1.39884 * 118.14479 * 359.49175 * 20 19 18 25 25 C 1.38127 * 118.99578 * 0.25970 * 24 20 19 26 26 N 1.31793 * 119.55134 * 89.99536 * 18 15 14 27 27 C 1.46927 * 118.73713 * 306.09287 * 14 13 12 28 28 H 0.96998 * 120.00235 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.45677 * 301.33494 * 11 9 7 30 30 H 1.08998 * 109.46139 * 61.30828 * 11 9 7 31 31 H 1.09002 * 109.50050 * 58.58378 * 12 11 9 32 32 H 1.09003 * 109.49573 * 178.68580 * 12 11 9 33 33 H 1.09000 * 109.74150 * 295.11882 * 13 12 11 34 34 H 1.09000 * 109.66346 * 174.55246 * 13 12 11 35 35 H 1.08002 * 120.50508 * 359.97438 * 19 18 15 36 36 H 0.96699 * 116.99636 * 180.26824 * 23 21 20 37 37 H 1.07997 * 120.50187 * 180.22757 * 24 20 19 38 38 H 1.07996 * 119.55240 * 179.97438 * 25 24 20 39 39 H 1.08993 * 109.58827 * 173.64935 * 27 14 13 40 40 H 1.09002 * 109.58343 * 294.07276 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6238 -2.5570 0.8890 11 6 0.3736 -2.5824 -1.2516 12 6 -0.4168 -3.8928 -1.2360 13 6 0.5634 -5.0755 -1.2539 14 7 1.5002 -4.9230 -0.1323 15 16 1.7163 -6.1493 0.9592 16 8 3.0018 -5.9544 1.5325 17 8 1.3340 -7.3474 0.2977 18 6 0.5502 -5.9039 2.2572 19 6 0.8993 -5.1342 3.3503 20 6 -0.0334 -4.9510 4.3760 21 6 0.2970 -4.1388 5.5688 22 8 1.3926 -3.6248 5.6689 23 8 -0.6195 -3.9652 6.5402 24 6 -1.2895 -5.5516 4.2407 25 6 -1.5553 -6.3006 3.1109 26 7 -0.6450 -6.4523 2.1696 27 6 2.2461 -3.6639 -0.0011 28 1 -0.4850 0.8400 0.0004 29 1 -0.3189 -1.7408 -1.2660 30 1 1.0040 -2.5493 -2.1402 31 1 -1.0288 -3.9379 -0.3352 32 1 -1.0589 -3.9407 -2.1155 33 1 1.1161 -5.0815 -2.1933 34 1 0.0128 -6.0099 -1.1456 35 1 1.8791 -4.6842 3.4136 36 1 -0.3590 -3.4236 7.2978 37 1 -2.0399 -5.4320 5.0081 38 1 -2.5219 -6.7687 2.9974 39 1 2.8061 -3.6667 0.9340 40 1 2.9332 -3.5572 -0.8405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:47 Heat of formation + Delta-G solvation = -125.295042 kcal Electronic energy + Delta-G solvation = -28350.904874 eV Core-core repulsion = 24257.763002 eV Total energy + Delta-G solvation = -4093.141872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96985 -39.67288 -37.77585 -37.12300 -36.41612 -35.69347 -33.37141 -33.15662 -31.84312 -31.15758 -30.14679 -25.93550 -25.16237 -24.33679 -23.63268 -22.23392 -21.71561 -19.79942 -19.05538 -18.33430 -18.06626 -17.30830 -16.82171 -16.30179 -16.22057 -15.97004 -15.94760 -15.28913 -14.77526 -14.65150 -14.27084 -13.96794 -13.68095 -13.52267 -13.26306 -12.86351 -12.80035 -12.60004 -12.24109 -11.92620 -11.91047 -11.80078 -11.43035 -11.38907 -11.12797 -11.03323 -10.89541 -10.73173 -10.39937 -10.27806 -10.05351 -9.98414 -9.84995 -9.78346 -9.42232 -8.89369 -8.51429 -8.24222 -6.06816 -4.14066 0.07148 0.41748 0.58905 2.19691 2.51960 3.01015 3.25683 3.34127 3.35295 3.39189 3.84758 3.97703 4.33235 4.38222 4.46950 4.57773 4.81202 4.91884 5.17709 5.24603 5.27287 5.36069 5.55637 5.66979 5.78701 5.96954 6.05509 6.11749 6.21412 6.28635 6.40875 6.55228 6.60189 6.81225 6.94109 7.14888 7.31126 7.37835 7.52709 7.65546 7.85701 8.03533 8.33215 8.89762 9.51499 10.98479 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.005313 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.972841 B = 5268.818461 C = 6985.805917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.039 3.961 10 H 0.026 0.974 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.124 3.876 14 N -0.982 5.982 15 S 2.695 3.305 16 O -0.948 6.948 17 O -0.941 6.941 18 C -0.445 4.445 19 C -0.017 4.017 20 C -0.094 4.094 21 C 0.529 3.471 22 O -0.490 6.490 23 O -0.509 6.509 24 C -0.067 4.067 25 C 0.073 3.927 26 N -0.366 5.366 27 C 0.121 3.879 28 H 0.259 0.741 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.169 0.831 36 H 0.420 0.580 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.077 0.923 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 -10.929 7.655 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.019 3.981 10 H 0.045 0.955 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.001 4.001 14 N -0.823 5.823 15 S 2.779 3.221 16 O -0.937 6.937 17 O -0.931 6.931 18 C -0.661 4.661 19 C -0.038 4.038 20 C -0.104 4.104 21 C 0.371 3.629 22 O -0.377 6.377 23 O -0.322 6.322 24 C -0.087 4.087 25 C -0.088 4.088 26 N -0.076 5.076 27 C -0.003 4.003 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.186 0.814 36 H 0.279 0.721 37 H 0.176 0.824 38 H 0.194 0.806 39 H 0.095 0.905 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.741 -12.065 6.604 14.548 hybrid contribution -0.007 2.354 1.819 2.975 sum -4.748 -9.711 8.423 13.704 Atomic orbital electron populations 1.69883 1.05905 1.26368 1.50548 1.24934 0.94838 0.99103 0.94892 0.86546 0.80300 0.83705 0.77522 1.19618 1.21031 1.21127 1.21140 0.93146 0.90204 1.50896 0.92186 1.18993 0.92931 0.91204 0.94991 0.95546 1.21581 0.99384 0.95359 0.98495 1.22070 0.97585 0.96781 1.00812 1.21596 0.90837 0.99223 0.88458 1.57655 1.54682 1.31955 1.38029 1.02386 0.73301 0.73575 0.72884 1.93614 1.35123 1.86120 1.78868 1.93559 1.83664 1.43268 1.72593 1.34202 1.09568 1.05921 1.16418 1.22163 1.00507 0.90886 0.90246 1.19430 0.96192 1.00742 0.94072 1.20548 0.81912 0.78202 0.82230 1.90965 1.23233 1.45584 1.77891 1.84487 1.45948 1.69099 1.32667 1.22784 0.95530 0.91857 0.98517 1.23163 0.99303 0.96791 0.89535 1.67646 0.99154 1.13593 1.27244 1.21957 0.94716 0.81804 1.01793 0.93060 0.88789 0.94335 0.92721 0.92435 0.91028 0.89995 0.81372 0.72062 0.82386 0.80638 0.90481 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.36 8.56 -34.44 -0.29 -13.65 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.90 2.25 -91.65 -0.21 0.69 16 10 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.11 -2.39 4.96 -26.69 -0.13 -2.53 16 12 C -0.13 -2.37 6.10 -26.39 -0.16 -2.53 16 13 C 0.12 2.01 6.41 -3.49 -0.02 1.98 16 14 N -0.98 -17.32 3.28 -113.27 -0.37 -17.69 16 15 S 2.69 46.35 5.75 -107.50 -0.62 45.74 16 16 O -0.95 -17.68 15.98 -57.18 -0.91 -18.59 16 17 O -0.94 -17.24 16.56 -57.18 -0.95 -18.19 16 18 C -0.44 -7.14 6.86 -17.59 -0.12 -7.27 16 19 C -0.02 -0.27 9.13 -39.01 -0.36 -0.62 16 20 C -0.09 -1.27 5.91 -104.66 -0.62 -1.88 16 21 C 0.53 6.81 8.30 34.75 0.29 7.10 16 22 O -0.49 -7.93 17.23 -19.21 -0.33 -8.26 16 23 O -0.51 -4.41 12.79 -40.42 -0.52 -4.93 16 24 C -0.07 -0.70 9.71 -39.01 -0.38 -1.07 16 25 C 0.07 0.81 11.17 -17.59 -0.20 0.62 16 26 N -0.37 -5.43 10.08 -12.50 -0.13 -5.55 16 27 C 0.12 2.39 5.60 -3.71 -0.02 2.37 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.09 2.33 6.05 -51.93 -0.31 2.02 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.22 7.12 -51.93 -0.37 0.85 16 35 H 0.17 2.67 7.30 -52.49 -0.38 2.28 16 36 H 0.42 1.78 9.11 45.56 0.42 2.19 16 37 H 0.16 1.10 7.71 -52.49 -0.40 0.69 16 38 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.08 1.50 7.13 -51.93 -0.37 1.13 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -33.59 351.47 -9.16 -42.75 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.93 Total: 2.57 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.31 Total: -15.19 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.13 Total: -46.86 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -2.71 Total: -49.97 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 46.35 SS G_CDS: -0.62 Total: 45.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.59 -9.16 -42.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.540 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds